PCR-ELISA for the semiquantitative detection of Nile perch (Lates niloticus) in sterilized fish muscle mixtures

A PCR-ELISA technique was developed for the semiquantitative detection of Nile perch (Lates niloticus) in experimentally sterilized fish muscle mixtures. Specific oligonucleotides derived from the 5S rDNA gene of Nile perch were selected. A forward primer, together with a reverse digoxigenin-labeled primer, permitted the amplification of specific 185 bp DNA fragments showing DNA intensities proportional to the contents of Nile perch muscle tissue in the fish mixtures. A biotinylated probe immobilized onto streptavidin-coated microplates was used to capture the digoxigenin-labeled fragments that were detected with peroxidase antidigoxigenin conjugate. Subsequent enzymatic conversion of substrate gave distinct absorbance differences when assaying fish binary mixtures containing different percentages of Nile perch muscle.     

Genetic structure of Xiphinema pachtaicum and X. index populations based on mitochondrial DNA variation

The dagger nematodes Xiphinema pachtaicum and X. index are two of the most widespread and frequently occurring Xiphinema spp. co-infesting vineyards and other crops and natural habitats worldwide. Sexual reproduction is rare in these species. The primary objective of this study was to determine the genetic structure of X. pachtaicum and X. index populations using eight and seven populations, respectively, from different "wine of denomination of origin (D.O.) zones" in Spain and Sardinia (Italy), by studying mitochondrial (cytochrome oxidase c subunit 1 or COI) and nuclear (D2-D3 expansion segments of 28S rDNA) markers. Both Xiphinema spp. showed low intraspecific divergence among COI sequences, ranging from 0.2% (1 base substitution) to 2.3% (10 substitutions) in X. pachtaicum and from 0.2% (1 base substitution) to 0.4% (2 substitutions) in X. index. Population genetic structure was strong for both species. Nevertheless, molecular differences among grapevine-growing areas were not significant, and intrapopulation diversity was very low. It is hypothesized that this genetic homogeneity in the nematode populations reflects their predominant parthenogenetic reproduction mode and low dispersal abilities. Our results also show that X. pachtaicum populations in Spain have possibly been established from two different populations of origin. Results also demonstrated that the two DNA regions studied are suitable diagnostic markers for X. index and X. pachtaicum.     

Age-specific expression of resistance to a neonicotinoid insecticide in the whitefly Bemisia tabaci

Neonicotinoid insecticides retain a crucial role within many chemical and integrated control strategies for the tobacco whitefly, Bemisia tabaci Gennadius, in spite of the establishment of potent and widespread resistance in many areas. Metabolic resistance mechanisms mediated by overexpression of P450-dependent monooxygenases have been implicated in neonicotinoid resistance in the two most prevalent B. tabaci biotypes. Further characterisation of resistance to the neonicotinoid imidacloprid in populations of both these B- and Q-types is reported.Expression of resistance to imidacloprid was age specific in B- and Q-type strains of B. tabaci. The highest observed resistance ratio at LC(50) expressed in prepupal nymphs was 13, compared with at least 580 in their adult counterparts. For all strains, resistance expressed in immatures was not sufficiently potent to compromise recommended imidacloprid application rates.Targeting neonicotinoids towards immature life stages of B. tabaci may circumvent the protection conferred by current mechanisms of resistance, simultaneously reducing the selection pressures imposed. However, such tactics may enhance the expression of existing resistance mechanisms in immatures, or promote the establishment of novel ones expressed in all life stages.     

The use of echocardiography as a health assessment tool in green sea turtles (Chelonia mydas)

There are limited techniques available to assess the health of sea turtles as physical examination has little correlation to clinical findings, and blood reference intervals are broad and provide limited prognostic significance. Advances in the portability of ultrasound machines allow echocardiography to be increasingly used in the health assessments of wild animals. This study performed blood analysis and echocardiograms on 11 green sea turtles upon admission to a rehabilitation clinic and six animals before release. Significant differences were seen between groups, with admission animals having significantly smaller diameters of the cavum arteriosum at systole and diastole, smaller E‐waves and an increased fractional shortening. Pre‐release animals displayed significant increases in the maximum blood velocities of both the pulmonary artery and the left aorta. Significant negative correlations were seen between fractional shortening and uric acid and between the velocity time integral of the pulmonary artery and urea. The pulmonary artery velocity time integral was also significantly correlated to the E wave. Furthermore, there was asynchrony between the cavum arteriosum and the cavum pulmonale and the detection of a parasitic granuloma in the ventricular outflow tract of one animal. Overall, the results suggest that cardiac function in stranded green sea turtles is significantly impaired and that echocardiography has applications in the health assessments of green sea turtles.     

The relative importance of soil properties and regional climate as drivers of productivity in southern Patagonia’s <Emphasis Type="Italic">Nothofagus antarctica</Emphasis> forests

Key message

Soil texture and temperature-related variables were the variables that most contributed to Nothofagus antarctica forest height in southern Patagonia. This information may be useful for improving forest management, for instance related to the establishment of silvopastoral systems or selection of suitable sites for forest reforestation in southern Patagonia.

Context

Changes in forest productivity result from a combination of climate, topography, and soil properties.

Aims

The relative importance of edaphic and climatic variables as drivers of productivity in Nothofagus antarctica forests of southern Patagonia, Argentina, was evaluated.

Methods

A total of 48 mature stands of N. antarctica were selected. For each study site, we measured the height of three mature dominant trees, as an indicator of productivity. Seven soil, five spatial, and 19 climatic features were determined and related to forest productivity. Through partial least squares regression analyses, we obtained a model that was an effective predictor of height of mature dominant trees in the regional data set presented here.

Results

The four variables that most contributed to the predictive power of the model were altitude, temperature annual range, soil texture, and temperature seasonality.

Conclusion

The information gathered in this study suggested that the incidence of the soil and temperature-related variables on the height of dominant trees, at the regionally evaluated scale, was higher than the effect of water-related variables.

     

Mutations in the DJ-1 gene associated with autosomal recessive early-onset parkinsonism

The DJ-1 gene encodes a ubiquitous, highly conserved protein. Here, we show that DJ-1 mutations are associated with PARK7, a monogenic form of human parkinsonism. The function of the DJ-1 protein remains unknown, but evidence suggests its involvement in the oxidative stress response. Our findings indicate that loss of DJ-1 function leads to neurodegeneration. Elucidating the physiological role of DJ-1 protein may promote understanding of the mechanisms of brain neuronal maintenance and pathogenesis of Parkinson's disease.     

Tree Quality in Agroforestry Systems Managed by Small-Scale Mayan Farmers in Chiapas,Mexico

Increasingly, plantations for food, fiber and wood, are necessary to provide a growing world population. Agroforestry systems become more and more important, however these systems usually develop in marginal conditions, limited land, restricted funding, occasional technical support and above this, there is limited documentation and evaluation of innovated traditional systems in indigenous and small-scale contexts, which challenge forest scientists. The aim of this research was to assess the quality of trees in plots managed by Mayan indigenous farmers who planted agroforestry systems with fine wood species to increase the value of land and labor in localities with highly-marginal social conditions in Northern Chiapas, México. Twenty oldest plots were selected within a group of previously established plots (eight with improved fallow, six with shaded coffee and six with maize crop associated to trees) where forest inventories were carried out in nested 100 and 1000 m²-circular plots. In all plots tree diameter, height, quality indicators and the incidence of the pest Hypsipyla grandella were measured. Trees in the maize-associated-to-trees system are favored by the practices applied to annual crop during the first 3rd–5th years, a period in which they are free from the interference of other trees and benefit from favorable light conditions, weeding and a higher intensive care from the farmer while shaded coffee and improved fallow have higher tree densities and a more closed canopy condition than maize associated to trees. In consequence, maize associated to trees shows 68.1 % stems with good form; shaded coffee and improved fallow averaged 40.5 and 39.7 % of good quality stems, respectively; improved fallow exhibited a greater number of suppressed trees than shaded coffee and maize associated to trees (p < 0.0001). In addition, maize associated to trees showed the highest proportion of trees with commercial value with 56.9 %, followed by improved fallow with 28.2 %, and shaded coffee with 11.8 % (p < 0.0001); the rest were trees with domestic uses. However, maize associated to trees significantly result with high incidence of H. grandella probably due to the crown exposure. Timber volume averaged 92.9 ± 68.9 m³ for improved fallow, 77.3 ± 24.8 m³ for shaded coffee, and 52.5 ± 39.7 m³ for maize associated to trees. The value of the fine wood represents increment in income, variety of products and self-employment for households. Nonetheless, improved fallow and coffee plantations might benefit from the elimination of competitors from larger trees to favor promising immature ones and pruning, while maize crop associated to trees might benefit from opportune pruning for controlling the stem borer as well as tree replacement to achieve long term replacement and harvesting.     

Effects of nitrogen source and defoliation on growth and biological dinitrogen fixation of Gliricidia sepium seedlings

Effects of four N sources and two defoliation treatments on growth and nitrogenase activity of Gliricidia sepium (Jacq.) Walp seedlings were studied in a greenhouse. All nutrients were supplied in irrigation water to the sterile growing medium. The N sources were: (1) 100 mg l(-1) of N supplied as NO(3) (-) (high-NO(3) (-)), (2) 50 mg l(-1) of N supplied as NO(3) (-) and inoculation with Rhizobium spp. medium-NO(3) (-)), (3)100 mg l(-1) of N supplied as NH(4)NO(3), and (4) inoculation with Rhizobium spp without mineral N (N(2)). At 35 weeks after sowing, mean total biomass was 130.5, 50.5, 22.9 and 17.4 g seedling(-1) in the NH(4)NO(3), N(2), medium-NO(3) (-) and high-NO(3) (-) treatments, respectively. The root/shoot ratio was high in all of the N treatments (1.73-2.77) because the seedlings had big taproots. The medium-NO(3) (-) treatment completely inhibited nodulation, whereas seedlings in the N(2) treatment were profusely nodulated. At 32 weeks after sowing, groups of seedlings in the N(2) and high-NO(3) (-) treatments were subjected to 50 or 100% defoliation. Closed-chamber acetylene reduction assays of intact root systems were conducted to compare nitrogenase activity at 7, 14 and 28 days after defoliation (DAD). At 7 and 14 DAD, nitrogenase activity of completely and partially defoliated seedlings was about 10 and 60%, respectively, of that of undefoliated controls. At 28 DAD, nitrogenase activity of completely defoliated seedlings was twice the predefoliation value, whereas nitrogenase activity of partially defoliated seedlings was only 87% of the predefoliation value. Recovery of nitrogenase activity was strongly correlated with foliage regrowth in the completely defoliated seedlings, but not in the partially defoliated seedlings. Abundant belowground C and N reserves in the large taproot probably contributed to the rapid recovery from defoliation. Accumulation of belowground biomass may also improve defoliation tolerance of mature trees.     

Utility of landscape mosaics and boundaries in forest conservation decision making in the Atlantic Forest of Brazil

We evaluated changes in the Atlantic Forest landscape over the last 40 years based on changes in boundaries and mosaics, including the hypothetical landscape resulting from the application of Brazilian laws for forest protection. Mosaics were identified as sets of land-use patches with a similar pattern of boundaries. Landscapes of different years, therefore, can be distinguished by differences in mosaics. We developed a technique to identify boundaries between patches from land-use maps using ArcGis^® and to build the patch x boundary matrix required for mosaic identification by means of a factorial and cluster analysis. The mosaics were characterized by some key uses as well as by their boundaries with other land uses. The mosaics were scored for forest conservation according to five issues: landscape permeability, cover, availability, quality, and fragmentation of forest. The values were based on land use and boundary patterns. Although Brazilian laws regarding forest protection have promoted conservation and the hypothetical legal landscape has presented the highest forest habitat availability, this expansion perpetuates a boundary pattern that complicates conservation and management, thus increasing the pressure on forest patches and favoring the further fragmentation of protected forest patches. These conclusions cannot be reached by simply recording changes in land uses.     

Environmental variability controls recruitment but with different drivers among spawning components in Gulf of St. Lawrence herring stocks

The factors affecting herring recruitment are still poorly understood, complicating the prediction of stock dynamics and the choice of operational management strategies. We investigated effects of intrinsic (SSB) and extrinsic factors (physical and biological environments, including competition and predation) on recruitment of the spring and fall spawning components of each of the two herring stocks occurring in the Gulf of the St. Lawrence between 1971 and 2014. Effects of potential explanatory factors on recruit (age 2) abundance were tested using Generalized Additive Models. Model fit was significantly improved by incorporating both physical and biological environmental variability, but effects of herring SSB and predation were not significant. Indices of zooplankton abundance and phenology explained more variance in recruitment than physical indices. Our results emphasize the dominance of bottom‐up processes over SSB in the regulation of herring recruitment. Environmental variability did not seem to act uniformly on the recruitment of either stock or their respective spawning components. A long‐term trend of decreasing recruitment in spring spawners was associated with a long‐term decline in abundance of cold water copepods. In fall spawners, optimal recruitment was dependent on warmer environmental conditions combined with an adequate supply (species composition and phenology) of zooplankton. These results provide the first empirical evidence that spring and fall spawning herring are adapted to contrasting environmental conditions and shed light on the potential mechanisms linking herring recruitment to key zooplankton community characteristics and phenology. Management strategies can be improved by incorporating this new knowledge on environmental drivers of herring recruitment.