Identification of factors associated with white mould in snap bean using tree-based methods

Most processing snap bean fields are treated with fungicides at flowering to suppress white mould, one of the more significant diseases of this crop. Farmers would like to know when their fields are at sufficient risk of white mould, to plan fungicide applications or avoid spraying if the risk is below a tolerable threshold. In 2006, 2007 and 2008, observational data were collected from processing snap bean fields across western and central New York State, USA. White mould was found in 20% of fields. Boosted regression trees were used to model white mould presence or absence in a field (a binary response variable) as a function of agronomic and edaphic variables, and macroscale drought indices. The five most important predictors were canopy openness during pod development, the number of days after planting, hydrologic soil group, canopy openness during bloom and elevation. The risk of white mould increased by about 20% when canopy openness was less than 20 cm at the bloom stage and c. 30% when canopy openness was less than 30 cm at the pod stage. The most relevant interaction was between canopy openness at the pod stage and hydrologic soil group. A random forest model for predicting the presence of white mould by bloom had an estimated classification accuracy of 73%. The extension of these results to remote forecasting of white mould in processing snap bean production is discussed.     

Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal)

Worldwide Puccinia striiformis f. sp. tritici (Pst) epidemics have been reported to be driven by few genetic lineages, while a high diversity is evident at the Pst Himalayan centre of diversity. This study investigated the relationship between pathotype diversity and genetic structure in Nepal, the eastern Himalayan region, which has been largely unexplored. Despite the high genetic diversity and recombinant structure detected through microsatellite genotyping, characterization of virulence phenotypes for 62 isolates identified only eight pathotypes, with two pathotypes predominant over all the populations. This is in contrast to the Pakistani and Chinese recombinant populations, where high pathotype diversity is associated with genetic diversity. The most prevalent Nepali pathotype was not a unique clonal lineage, but was represented by seven multilocus genotypes from four distinct genetic subgroups, suggesting strong directional selection on virulence genes, resulting in convergent pathotypes in distinct genetic groups. This convergent selection is discussed in comparison with clonal French and recombinant Pakistani populations. Additionally, the Nepali Pst population carried virulence to 17 out of 24 tested yellow rust resistance genes (Yr), with the absence of virulence to Victo and Early Premium and resistance genes Yr5, Yr10, Yr15, Yr24 and Yr26. Virulence to Yr2, Yr7, Yr27 and YrSu were fixed in all isolates, in line with the deployment of these resistance genes in Nepal. The results reflect the influence of resistance gene deployment on selection of virulence and pathotypes in a recombinant pathogen population, which must be considered in the context of durable resistance gene deployment.     

Ultrastructure of ray parenchyma cells in the wood of Melia azedarach L. (Meliaceae)

Summary The fine structure of ray parenchyma cells in the sapwood during its transformation to heartwood in Melia azedarach L. (Meliaceae) is described. They have thick walls with electron dense and opaque lamellations. Many branched and unbranched plasmodesmatal connections are present on their lateral and end walls. The cells in the outer sapwood show abundant starch which disappears completely in the inner sapwood ant at the sapwood-heartwood boundary. The morphological features of the starch grain during its depletion are described and their association with lipid formation is indicated. It is suggested that the phenolic materials in the heartwood cells are formed at the sapwood-heartwood boundary.Abbreviations Cy Cytoplasm - ER Endoplasmic reticulum - L Lipid droplet - M Mitochondrion - ML Middle lamella - MVB Multivesicular body - N Nucleus - P Pit-field - PC Pit cavity - PD Plasmodesmata - PL Plasmalemma - St Starch - V Vacuole - VS Vesicle - W Wall The authors thank the Council of Scientific and Industrial Research and University Grants Commission, New Delhi, India for the financial assistance     

Insecticide detoxification indicator strains as tools for enhancing chemical discovery screens

BACKGROUND: Insecticide discovery screens carried out on whole organisms screen for potency resulting from chemical activity at the target site. However, many potentially insecticidal compounds are naturally detoxified in vivo and do not make it to the target site. It is hypothesised that insect strains with their xenobiotic detoxification machinery compromised could be used to identify such compounds that normally fail to show up in screens; these compounds could then be more rationally designed to increase their bioavailability. This strategy was tested with transgenic Drosophila lines with altered expression of Cyp6g1 and Dhr96. RESULTS: It was observed that Cyp6g1 knockdown transgenic lines have increased susceptibility to the test compound imidacloprid, while Dhr96 knockdown transgenic lines are resistant. Evidence was found for a systemic response to xenobiotic exposure, uncovered by piperonyl butoxide treatment and by gene expression profiling. Sex-specific gene expression regulated by DHR96 was also observed. CONCLUSION: The results confirm that this approach to chemical discovery could identify compounds that escape traditional screens. The complexity of the system means that a panel of single and multiple gene knockdown transgenic lines may be required. Copyright © 2011 Society of Chemical Industry     

Study of Cotton Fibre Traits Inheritance under Different Temperature Regimes

Genetic behaviour of fibre quality parameters under heat‐stressed conditions clearly reflected the significant effect of heat stress on the phenotypic expression of fibre quality parameters. Results from the field experiments demonstrated that fibre quality was better among the upland cotton cultivars under non‐stressed (June) regime. Fibre length, strength, uniformity and fineness were substantially high under June regime when compared with that under April (heat stressed) regime. The prevalence of significant genotype × temperature regime interaction for fibre length, fineness and strength provided another evidence for the influence of temperature regimes on the expression of fibre traits. A significant effect of heat stress on the phenotypic expression of fibre quality parameters was observed.     

Studies on Persian clover (Trifolium resupinatum)

Yields of green fodder, dry matter and nitrogen were adversely affected by an increase in the harvesting interval of Persian clover from 40 to 100 days. The optimum harvesting interval which gave maximum yield of green fodder (86.6 ton/ha) and dry matter (11.2 ton/ha) was 30 days. The maximum yield of total nitrogen (423 kg/ha) was obtained when the harvesting interval was 20 days.