Harbour seal (Phoca vitulina) abundance within the Firth of Tay and Eden Estuary,Scotland: recent trends and extrapolation to extinction

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Age and growth of the largemouth perch Percichthys colhuapiensis in the Negro river, Argentine Patagonia

Largemouth perch (Percichthys colhuapiensis) represents one of the most economically important fish species in the Argentine Patagonia. However, little research has been done on the age and growth and population dynamics of this fish, though both studies are essential to properly deal with fisheries forecasts and management. As a contribution to elaborating management programmes for P. colhuapiensis, we evaluated the age and growth of this species in the Negro river via scale and whole otolith reading methods. The sample consisted of 579 specimens ranging in total length (TL) from 90 to 475 mm, captured seasonally from December 1994 to December 1995. The formation of scale annuli (end of winter) and the hyaline zone on otoliths (winter) of adult fish coincided with the beginning of the spawning season (end of winter-beginning of spring). The maximum estimated age was 11 years, which indicates that this is a relatively long-lived species. Otoliths were useful for ageing specimens 1–5 years-old, but above this age whole otoliths yielded lower age estimates than scales. Isometric growth of weight with length was found for total population, juveniles, and separate sexes (p > 0.25 in all cases). No significant differences between the length–weight relationships of sexes were observed (p > 0.10). Length at first maturity was significantly higher for males (TL₅₀ = 271 mm TL; r = 0.88) than for females (TL₅₀ = 243 mm TL; r = 0.96) (p < 0.01). Largemouth perch exhibited a consistent pattern of increase in length with age, with a period of fast growth during the first 5 years, and a slow-growing phase during the rest of his life. The growth parameters based on scale data were L∞: 462.1 mm, k = 0.23 and t₀ = −0.94 for total population, L∞: 402.3 mm, k = 0.33 and t₀ = −0.67 for males, and L∞: 548.4 mm, k = 0.15 and t₀ = −1.59 for females, whereas those based on otolith reading were L∞: 537.4 mm, k = 0.17 and t₀ = −1.0 for total population, L∞: 497.6 mm, k = 0.21 and t₀ = −0.79 for males, and L∞: 582.0 mm, k = 0.14 and t₀ = −1.53 for females. Scales are concluded to be the best structure to age P. colhuapiensis because they rendered L∞ values closer to the maximum TL observed, high precision, easiness of collection, low processing time, and the possibility of performing non-destructive monitoring studies.     

Impact of Pea necrotic yellow dwarf virus (PNYDV) on nodulation,N2 fixation and yield in faba bean (Vicia faba,L.)

Journal of Plant Diseases and Protection - Pea necrotic yellow dwarf virus (PNYDV) is a novel nanovirus in Europe, affecting various grain legumes. The impact of PNYDV on nodulation, symbiotic N2...     

Participatory mapping of landscape values in a Pan-European perspective

Context

Human–nature interactions are reflected in the values people assign to landscapes. These values shape our understanding and actions as landscape co-creators, and need to be taken into account to achieve an integrated management of the landscape that involves civil society.

Objectives

The aim of this research was to increase the current knowledge on the most and least common landscape values perceived by local stakeholders, the patterns in the spatial distribution of values, and their connection to different socio-economic backgrounds and landscape characteristics across Europe.

Methods

The research consisted of a cross-site comparison study on how landscape values are perceived in six areas of Europe using Public Participation GIS surveys. Answers were analysed combining contingency tables, spatial autocorrelation and bivariate correlation methods, kernel densities, land cover ratios, and viewshed analyses. Results were discussed in the light of findings derived from other European participatory mapping studies.

Results

We identified shared patterns in the perception of landscape values across Europe. Recreation, aesthetics, and social fulfilment were the most common values. Landscape values showed common spatial patterns mainly related to accessibility and the presence of water, settlements, and cultural heritage. However, respondents in each study site had their own preferences connected to the intrinsic characteristics of the local landscape and culture.

Conclusions

The results encourage land planners and researchers to approach landscape values in relation to socio-cultural and bio-physical land characteristics comprehensibly, acknowledging the complexity in the relationship between people’s perception and the landscape, to foster more effective and inclusive landscape management strategies.

     

Surface physicochemical properties of globulin-P amaranth protein

Globulin-P, the polymerized 11S amaranth globulin, is composed of 280 kDa unitary molecules (UM, 23%) and aggregates larger than 500 kDa (A, 70%). Antibodies against these proteins were prepared to study their surface characteristics and to assess their homology with other storage proteins. Results showed that globulin-P unitary molecules and aggregates had similar reactive surfaces. A polypeptide of 56 kDa was found to be the most reactive to the antibodies assayed, followed by the acidic polypeptides. Such results support previous information, according to which these polypeptides appeared to be the most exposed on the molecule surface. Globulin-P fraction presented cross-reactivity with the remaining amaranth protein fractions: 11S-globulin, glutelins, and albumins. Globulin-P and 11S-globulin showed similar reactive surfaces whereas glutelin and albumins presented a lower cross-reactivity. The reactivity of the glutelin fraction depended on its sequence. Globulin-P fraction presented cross-reactivity with quinoa globulins, and to a lesser extent with globulins of sunflower and rice. Moreover, the anti-Gp serum was unable to detect either conformational or sequence epitopes in globulins of soybean, wheat, buckwheat, rice, and rye.     

Ordinary Least Squares Regression of Ordered Categorical Data: Inferential Implications for Practice

Ordered categorical variables are frequently encountered as response variables in many disciplines. Agricultural examples include quality assessments of soil or food products, and evaluation of lesion severity, such as teat ends status in dairy cattle. Ordered categorical responses (OCR) are characterized by multiple levels recorded on a ranked scale, whereby levels appraise order but may not be informative of relative magnitude or proportionality between levels. A number of statistically sound methods are available in the standard toolbox to deal with OCR, such as constrained cumulative logit and probit models; however, these are commonly underutilized in practice. Instead, ordinary least squares linear regression (OLSLR) is often employed to infer upon OCR, despite violation of basic model assumptions. In this study, we investigate the inferential implications of OLSLR-based inference on OCR using simulated data to explore realized Type I error rate and realized statistical power under a variety of scenarios. The design of the simulation study was motivated by a data application, thus considering increasing number of levels and various frequency distributions of the OCR. We then illustrate inferential performance of OLSLR relative to a probit regression model fitted to an OCR using a survey dataset of veterinarian antimicrobial use in cattle feedlots. This article has supplementary material online.     

Amaranth (Amaranthus hypochondriacus) vicilin subunit structure

The 7S-globulin fraction is a minor component of the amaranth storage proteins. The present work provides new information about this protein. The amaranth 7S-globulin or vicilin presented a sedimentation coefficient of 8.6 ± 0.6 S and was composed of main subunits of 66, 52, 38, and 16 kDa. On the basis of mass spectrometry (MS) analysis of tryptic fragments, the 52, 38, and 16 kDa subunits presented sequence homology with sesame vicilin, whereas the 66 kDa subunit showed sequence similarity with a putative vicilin. Several characteristics of the 66 kDa subunit were similar to members of the convicilin family. Results support the hypothesis that the 7S-globulin molecules are composed of subunits coming from at least two gene families with primary products of 66 and 52 kDa, respectively. According to the present information, amaranth vicilin may be classified into the vicilin group that includes pea, broad bean, and sesame vicilins, among others.     

Polycyclic aromatic hydrocarbons and polychlorinated biphenyls in urban and semi-urban soils of Havana,Cuba

Purpose

Polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) in Havana were quantified and analyzed in relation to possible emission sources to assess metropolitan soil contaminations in a highly dynamic, urban environment. The results of this study will serve Cuban legislators as a basis to develop environmental quality standards for organic pollutants in soils.

Materials and methods

Possible emission sources as, e.g., the vicinity to roads or industrial plants and the influence of the land use were related to the organic contaminants concentrations. Therefore, 28 topsoils in the Havana urban and semi-urban area were sampled at agricultural (n?=?12), organoponic (urban gardens in the capital, n?=?8), public park (n?=?7), and remediation (on-site bioremediation of an oil refinery, n?=?1) sites. Their PAH and PCB concentrations were measured with gas chromatography mass spectroscopy and the total organic carbon (TOC) and black carbon (BC) concentrations with the chemo-thermal oxidation.

Results and discussion

The sum of the 16 PAH concentrations ranged from 0.04 mg/kg in agricultural and organoponic soils to up to 72 mg/kg in a public park at about 1.5 km distance from an oil refinery. The lowest sum of the seven PCB congener concentrations was also measured in organoponic soils (0.002 mg/kg) and the highest in an arable patch of land between the rail roads and a main road (0.1 mg/kg). Both, PAH as well as PCB soil concentrations in Havana were almost up to two orders of magnitudes higher compared to a soil monitoring in the neighboring province of Mayabeque, but overall in the typical range of urban soils reported by other studies. The pollutants showed no relationship between TOC and BC except for PAHs with BC. For PAHs, combustion was the main source.

Conclusions

A comparison of the pollutant concentrations with regulatory guidance values (RGV) of other countries revealed PCB concentrations in Havana soils far below these RGV. In contrast, some concentrations of benzo[a]pyrene, the most carcinogenic PAH, in agricultural and park soils in Havana exceeded some RGV. Thus, some public parks pose a risk according to the Canadian quality guidelines when people have direct contact with these soils but not if they were consuming products thereof.