Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth

Selective autophagy can be mediated via receptor molecules that link specific cargoes to the autophagosomal membranes decorated by ubiquitin-like microtubule-associated protein light chain 3 (LC3) modifiers. Although several autophagy receptors have been identified, little is known about mechanisms controlling their functions in vivo. In this work, we found that phosphorylation of an autophagy receptor, optineurin, promoted selective autophagy of ubiquitin-coated cytosolic Salmonella enterica. The protein kinase TANK binding kinase 1 (TBK1) phosphorylated optineurin on serine-177, enhancing LC3 binding affinity and autophagic clearance of cytosolic Salmonella. Conversely, ubiquitin- or LC3-binding optineurin mutants and silencing of optineurin or TBK1 impaired Salmonella autophagy, resulting in increased intracellular bacterial proliferation. We propose that phosphorylation of autophagy receptors might be a general mechanism for regulation of cargo-selective autophagy.     

Structural basis for tail-anchored membrane protein biogenesis by the Get3-receptor complex

Tail-anchored (TA) proteins are involved in cellular processes including trafficking, degradation, and apoptosis. They contain a C-terminal membrane anchor and are posttranslationally delivered to the endoplasmic reticulum (ER) membrane by the Get3 adenosine triphosphatase interacting with the hetero-oligomeric Get1/2 receptor. We have determined crystal structures of Get3 in complex with the cytosolic domains of Get1 and Get2 in different functional states at 3.0, 3.2, and 4.6 angstrom resolution. The structural data, together with biochemical experiments, show that Get1 and Get2 use adjacent, partially overlapping binding sites and that both can bind simultaneously to Get3. Docking to the Get1/2 complex allows for conformational changes in Get3 that are required for TA protein insertion. These data suggest a molecular mechanism for nucleotide-regulated delivery of TA proteins.     

Remobilization of iron from primary leaves of bean plants grown at various iron levels

In order to study the effect of different growth rates of the shoot apex, i.e. shoot demand, on the remobilization of iron (Fe) from mature (primary) leaves, bean (Phaseolus vulgaris L.) plants were precultured with 8x10^‐5 M FeEDTA for four days. Thereafter, plants were grown for another six days at various levels of Fe (0.0, 1.0, and 10.0μM FeEDTA), and simultaneously treated with or without shading of one primary leaf. Dry weight increment of the shoot apex decreased with decreased Fe in the nutrient solution. Shading of one primary leaf decreased total dry weight of plants irrespective of Fe supply, but increased the dry weight of the shoot apex of plants supplied without Fe or with only 1.0μM Fe. In these plants, the concentration of chlorophyll and Fe in the shoot apex corresponded with the treatment effects on dry weight of the shoot apex. Shading induced senescence of the shaded leaf, decreased the content of “active Fe”; (extractable in dilute acid), and also enhanced the remobilization of Fe and copper (Cu) from the shaded leaf. The remobilization of Fe from primary leaves was not related to the severity of chlorosis in the shoot apex (the Fe demand of sink tissue), indicating that only a certain fraction of the total Fe in mature leaves can be remobilized.     

Lion's paw scallop (Nodipecten subnodosus, Sowerby 1835) aquaculture in Bahía Magdalena, Mexico: effects of population density and season on juvenile growth and mortality

This study examined the effects of density and growing season on growth and survival of juvenile lion's paw scallops (Nodipecten subnodosus) in Estero San Buto, a mangrove channel in Bahía Magdalena, Mexico. Scallops were kept in plastic mesh bags in oyster trays at three population densities (500, 1000 and 2000 organisms per tray, or low medium and high density respectively) over a period of 2 months from October to December 2001 and from February to April 2002. Growth (shell height increment) was measured every 7–12 days and mortality was evaluated at the end of the experiment (dead shell count). Overall growth was fast (0.24–0.38 mm day^?1) in comparison with other pectinids. Significant differences were found for both, density and season, with faster growth occurring at lower densities and during the fall season when the water temperature was higher. Mortality was low (0.5–3.0% 60 day^?1) except for the high‐density treatment in the fall (44% 60 day^?1). Crowding together with high water temperatures and increased metabolic oxygen demand of the scallops and possibly competition for food were the probable reasons for this high mortality. Overall, mortality was lower in the spring, when temperatures were lower, O₂ values were higher and food was more abundant.     

Comparative growth and mortality of cultured Lion's Paw scallops (Nodipecten subnodosus) from Gulf of California and Pacific populations and their reciprocal transplants

This study focused on the comparison of growth and mortality of Lion's Paw scallops Nodipecten subnodosus from Gulf of California and Pacific populations and their reciprocal transplants, cultured in suspended module and bottom culture in Baja California Sur, Mexico. Environmental parameters were monitored to determine site‐specific differences and were correlated with scallops' population‐specific responses. Significant differences in growth were found between sites, populations and grow‐out methods. Growth performance of scallops originating from the Pacific population was lower and uniform between Pacific and Gulf culture sites, whereas Gulf scallops cultured at the Pacific site grew better. Growth and survival was higher in suspended than bottom culture, mainly due to depth‐associated differences in food and oxygen supply. Increasing temperatures and decreasing food and oxygen during summer months resulted in depressed growth and elevated mortality. At the Pacific site, this was partially compensated by considerably higher food availability. Gulf scallops resisted high diurnal temperature changes at San Buto significantly better than Pacific scallops. They also survived generally better than the Pacific population, independent of site and grow‐out method, indicating physiological adaptations to high temperatures and low food availability in their habitat. Consequently, the Gulf population appears to be more feasible for aquaculture operations in coastal lagoons with stressful conditions.     

Dogs on the catwalk: Modelling re-introduction and translocation of endangered wild dogs in South Africa

In South Africa, a plan was launched to manage separate sub-populations of endangered African wild dogs (Lycaon pictus) in several small, geographically isolated conservation areas as a single meta-population. This intensive management approach involves the re-introduction of wild dogs into suitable conservation areas and periodic translocations among them. Despite the initial failures and high costs associated with wild dog re-introductions and translocations, there is no predictive framework available to quantify which management protocol is the most efficient. We therefore developed an individual-based model of wild dog population and pack dynamics, which accounts for the wild dogs’ social complexity. The model appeared to capture the essential characteristics of a real wild dog population from Hluhluwe-iMfolozi Park, South Africa and to be relatively robust to parameter uncertainty, suggesting that the model is valid enough for addressing management problems. The model enabled us to quantify a critical initial number of packs (two) and individuals per pack (six) necessary for a re-introduced wild dog population to establish itself in the release area. We also found a practically feasible intervention regime at which a re-introduced wild dog population had the best chance of persistence: intermittently adding packs (at least every 6 years) and harvesting disperser groups (as often as every 4 years) for translocation to other release sites, without threatening the small source population. This study demonstrates that individual-based models can be a powerful decision-support tool in re-introduction planning and provides insight into how populations made up of social groups have dynamics, and ultimately persistence, determined by individual behaviour.     

Reconstructing 290 years of a data‐poor fishery through ethnographic and archival research: The East Pacific green turtle (Chelonia mydas) in Baja California,Mexico

Evaluating historical changes in the exploitation of marine organisms is a key challenge in fisheries ecology and marine conservation. In the Eastern Pacific, marine turtles were exploited for millennia before systematic monitoring began <50 years ago. Using ethnographic and historical data, we generated a detailed reconstruction of the East Pacific green sea turtle (Chelonia mydas) fishery in Mexico's Baja California peninsula from 1700 to 1990. Sea turtles from the region's important feeding areas were a staple food source from the earliest phases of human occupation, dating back at least 12,000 years. In contrast with regions such as the Caribbean, small human populations and limited market access resulted in apparently sustainable turtle harvests until the second half of the 20th century. We found that the estimated annual catches between 1960 and 1980 exceeded the estimated annual catches of the previous 250 years by an order of magnitude, leading to the collapse of the fishery and the depletion of the green turtle population. A total ban on sea turtle captures in 1990, comprehensive nesting beach protection, and significant conservation efforts resulted in increases in breeding females on nesting beaches and catch rates in scientific monitoring on main feeding grounds since the early 2000s. This provides a positive outlook for this once‐depleted population segment. Although further research is needed to evaluate current conservation status, we have identified a date, between 1950 and 1960, which can serve as a reliable temporal reference for future evaluations of historical baseline abundance in this region.