A Simple and Reliable Assay for Detecting Specific Nucleotide Sequences in Plants Using Optical Thin-film Biosensor Chips

Here we report the adaptation and optimization of an efficient, accurate and inexpensive assay that employs custom-designed silicon-based optical thin-film biosensor chips to detect unique transgenes in genetically modified （GM） crops and SN-P markers in model plant genomes. Briefly, aldehyde-attached sequence-specific singlestranded oligonucleotide probes are arrayed and covalently attached to a hydrazine-derivatized biosensor chip surface. Unique DNA sequences （or genes） are detected by hybridizing biotinylated PCR amplicons of the DNA sequences to probes on the chip surface. In the SN-P assay, target sequences （PCR amplicons） are hybridized in the presence of a mixture of biotinylated detector probes and a thermostable DNA ligase. Only perfect matches between the probe and target sequences, but not those with even a single nucleotide mismatch, can be covalently fixed on the chip surface. In both cases, the presence of specific target sequences is siL, nified by a color change on the chip surface （gold to blue/purple） after brief incubation with an anti-biotin IgG horseradish peroxidase （HRP） to generate a precipitable product from an HRP substrate.     

Remediation of amide pesticide-polluted soils by combined solarization and ozonation treatment

Agriculture has a close relationship with nature, but it can also be the source of negative and permanent environmental effects. The use of pesticides in modern agriculture is a common practice, but their side effects on the environment cannot be disregarded. In this study, we evaluated a combination of solarization and ozonation techniques for the elimination of six amide pesticides (boscalid, chlorantraniliprole, cyflufenamid, fluopyram, napropamide, and propyzamide) in soil. Initial experiments were performed with four different soils to assess the efficiency of this methodology at different soil temperatures and ozone dosages under laboratory conditions, and then a greenhouse pot experiment was conducted under controlled conditions during summer. Fifty days after the onset of the experiments, higher degradation percentages of amide pesticides were observed in ozonized soils than in other treated soils, particularly when ozone was applied at 10 cm soil depth. The results show that the utilization of ozonation, along with solarization, represents a valid method for degrading residues of the studied pesticides and suggest that this combined technology may be a promising tool for remediating pesticide-polluted soils.     

Recruitment of sympatric vendace (Coregonus albula) and whitefish (C. lavaretus) is affected by different environmental factors

Vendace and whitefish in Lake Osensjøen (boreal south‐east Norway) were studied by means of gillnet test fishing (1976–2013) and hydro acoustic acquisition (1986–2011). Vendace increased in number between 1998 and 2009 while growth and size at maturity decreased. The relative density of whitefish decreased in the pelagic habitat, whereas growth and size remained the same. Both species exhibited varying year‐class strength. Whereas strong year‐classes of both species became less frequent after 1980 than before this, this seemed to change after 2000, especially for vendace. Generalised additive models suggested a strong positive relationship between July/August mean air temperature and year‐class strength of both vendace and whitefish. Whitefish recruitment was also negatively affected by the new regulation regime implemented since 1981, and positively correlated with water level after hatching and by late ice off. The reason for the diverging impacts of environmental factors on the two species may be that vendace spawn in deeper waters that whitefish do. The results indicate that increasing summer temperatures benefit recruitment of both species, whereas low water level and early ice off will harm whitefish recruitment. Both trends are caused by climate warming. It may be speculated that increased density of the specialised plankton feeding vendace may affect the algal community through increased predation on herbivorous zooplankton and potentially affect the trophic state of the lake.     

Regression analysis of plasticity and phenotypic stability of hybrid spring soft wheat populations with respect to gluten quality

The plasticity and stability of hybrids selected from three heavy-eared populations according to the gluten deformation index GDI-1 are shown. The possibility of testing closely related genotypes by criteria based on ecological regression is examined. Hybrid forms valuable in adaptability that can be used in breeding are found.     

Mathematical modeling of the process of convective drying of skim milk using an electric field

The results of mathematical modeling convective drying of milk using weak electric pulse effect and a comprehensive evaluation of the influence of an electric field on the rate of the drying process are given.     

Comparative Performance of Rice with System of Rice Intensification (SRI) and Conventional Management using Different Plant Spacings

The System of Rice Intensification (SRI) reportedly enhances the yields of rice (Oryza sativa L.) through synergy among several agronomic management practices. This study was conducted to investigate the effects on rice plant characteristics and yield by comparing the plants grown with different methods of cultivation – SRI vs. recommended management practices (RMP) focusing on the impact of different plant spacings. Performance of individual hills was significantly improved with wider spacing compared with closer‐spaced hills in terms of root growth and xylem exudation rates, leaf number and leaf sizes, canopy angle, tiller and panicle number, panicle length and grain number per panicle, grain filling and 1000‐grain weight and straw weight, irrespective of whether SRI or RMP was employed. Both sets of practices gave their highest grain yield with the spacing of 20 × 20 cm; however, SRI yielded 40 % more than the recommended practice. At this spacing, canopies also had the highest leaf area index (LAI) and light interception during flowering stage. The lowest yield was recorded at 30 × 30 cm spacing under both the practices, as a result of less plant population (11 m^?2), despite improved hill performance. During the ripening stage, hills with wider spacing had larger root dry weight, produced greater xylem exudates, and transported these towards shoot at faster rates. These features contributed to the maintenance of higher chlorophyll levels, enhanced fluorescence and photosynthesis rates of leaves and supported more favourable yield attributes and grain yield in individual hills than in closely‐spaced plants. Moreover, these parameters further improved in SRI, apart from the enhanced percentage of effective tillers and showed substantial and positive impacts on grain yield (17 %) compared with recommended practice. In conclusion, wide spacing beyond optimum plant density, however, does not give higher grain yield on an area basis and for achieving this, a combination of improved hills with optimum plant population must be worked out for SRI.     

DROUGHT STRESS: Soil Water Availability Alters the Inter‐ and Intra‐Cultivar Competition of Three Spring Wheat Cultivars Bred in Different Eras

Competition for water generates a classic aspect of the tragedy of the commons, the ‘race for fish’, where crops must allocate more resource to acquisition of the limiting resource than is optimal for crop yield allocation. A pot experiment using a simple additive (target–neighbour) design was conducted to examine the above‐ground and below‐ground growth of three spring wheat (Triticum aestivum L.) cultivars when grown alone and in mixtures at three levels of water availability. The effects of competition and water availability were compared by observing patterns of growth, biomass allocation and below‐ground outcomes. Competitive interactions were investigated among cultivars ‘HST’, ‘GY602’ and ‘LC8275’, target plant of each cultivar grown without neighbouring plants are referred to herein as control plant and one target plant of each cultivar sown surrounded either by same or another cultivar as intra‐ or inter‐cultivar competition. Competitive ability was assessed as the response ratio (lnRR) between the target plant surrounded by six other plants and the target plant in isolation. Our results showed that the cultivar ‘HST’, released over a century ago, produced a higher biomass and grain yield than the more recently released cultivars ‘LC8275’ and ‘GY602’ when grown as isolated plants with sufficient water supply. However, competition for resources from neighbours led to target plant biomass and grain yield being significantly reduced relative to controls in all three cultivars, particularly in ‘HST’. When subjected to intra‐cultivar competition, the two recently released cultivars ‘LC8275’ and ‘GY602’ had higher grain yields and water use efficiency for grain than ‘HST’ in all three water regimes. The landrace ‘HST’ had better and significantly linear relationships between biomass and biomass allocation, root length and specific root length, whereas the recent and modern cultivars had much more water‐related species‐specific changes in root morphology and allocation patterns. These results suggest that crop traits that influence competitive ability, such as biomass allocation to roots and root plasticity in response to drought have changed in modern wheat cultivars because of breeding and selection.     

Clinical efficacy of diclofenac sodium and flunixin meglumine as adjuncts to antibacterial treatment of respiratory disease of calves

Objective To compare the efficacy of the non-steroidal antiinflammatory drugs, diclofenac sodium and flunixin meglumine as adjuncts to the antibiotic treatment of bovine respiratory disease (BRD). Procedure We randomly allocated 80 Holstein calves with BRD to three groups. All the calves received a dose of 2.5 mg/kg tulathromycin by single subcutaneous injection and two of the groups received, in addition, either 2.5 mg/kg diclofenac sodium as a single intramuscular injection (diclofenac group, n = 30) or 2.2 mg/kg flunixin meglumine as an intravenous injection on the first three consecutive days after tulathromycin administration (flunixin group, n = 30). All calves were given a clinical score prior to initial treatment (day 0) and after treatment (days 1, 2, 3, 7 and 14) by observing appetite, demeanour, rectal temperature, the rate and type of respiration, presence or absence of coughing, and nasal discharge. Results During the first 48 h, improvement of adverse signs of respiratory disease, such as pyrexia and elevated respiratory rate, and of a high clinical index score was significant in the two adjunct groups compared with the calves receiving antibiotic alone. The reduction in pyrexia was greatest in the diclofenac group. There were no statically significant differences between treatment groups with regard to eventual perceived recovery from respiratory disease in 14 days. Conclusion In this trial, a single intramuscular dose of diclofenac sodium was equally effective as three intravenous injections of flunixin meglumine given on consecutive days as adjunctive therapy for BRD.