Character analysis and numerical classification in a wheat collection from Sicily

Summary A study was undertaken using 48 characters observed in plants, spikes and seeds in order to determine the amount of information of different characters and their taxonomic importance in tetraploid wheat samples from Sicily. A classification of the material was also attempted using similarity indices.The most important characters appear: leaf pubescence, glume colour and length, and seed colour. Using all characters, similarity indices among samples were computed and a classification was worked out. This classification, which is very similar to those proposed by various scientists, produces hierarchical groups, showing different levels of merging, and offers very interesting hypotheses on the evolution of the Siciliandurum wheats.

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Merkmalsanalyse und numerische Klassifikation an einer Weizen-Kollektion aus Sizilien

Zusammenfassung Untersucht wurden 48 Pflanzen-, Ähren- und Kornmerkmale an Proben tetraploider Weizen aus Sizilien, um den Informationsgehalt unterschiedlicher Merkmale und ihren taxonomischen Wert zu erfassen. Anhand von Ähnlichkeitsindices wurde auch eine Klassifikation des Materials vorgenommen.Als bedeutsamste Merkmale erscheinen: Blattpubeszenz, Spelzenfarbe und-länge und Kornfarbe. Auf der Grundlage aller Merkmale wurden Ähnlichkeitsindices zwischen den Proben errechnet und eine Klassifikation ausgearbeitet. Diese ist den Klassifikationen anderer Wissenschaftler sehr ähnlich, ergibt hierarchische Gruppen mit unterschiedlichem Ähnlichkeitsniveau und ermöglicht die Aufstellung einer interessanten Hypothese zur Evolution der sizilianischendurum- Weizen.

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Genetic diversity of Syrian pistachio (<Emphasis Type="Italic">Pistacia vera</Emphasis> L.) varieties evaluated by AFLP markers

Pistachio (Pistacia vera L.) is a strategic nut tree species in the Middle East which holds comparative advantage over other fruit trees in view of its hardiness, income generation opportunities and benefits for the ecosystem. Yet pistachio cultivation depends on a very narrow genetic base, in spite of the existence of many varieties still marginally exploited. Syria is an important center of diversity for pistachio. A country wide ecogeographic survey in this country was carried out to determine the extent of pistachio genetic diversity and its use. As a whole, 114 accessions were collected from 37 farms to assess diversity at morphological and molecular level. Molecular evaluation was carried out using Amplified Fragment Length Polymorphism (AFLP) technique and performed using seven primer pair combinations. Results from the studies allowed the identification of 25 pistachio female varieties in Syria, some of which unique and described for the first time. Three groups of pistachio diversity were identified by cluster analysis which provides useful information about the distribution of genetic diversity in Syria for enhanced use and sustainable conservation.     

Correction of ADA-SCID by stem cell gene therapy combined with nonmyeloablative conditioning

Hematopoietic stem cell (HSC) gene therapy for adenosine deaminase (ADA)-deficient severe combined immunodeficiency (SCID) has shown limited clinical efficacy because of the small proportion of engrafted genetically corrected HSCs. We describe an improved protocol for gene transfer into HSCs associated with nonmyeloablative conditioning. This protocol was used in two patients for whom enzyme replacement therapy was not available, which allowed the effect of gene therapy alone to be evaluated. Sustained engraftment of engineered HSCs with differentiation into multiple lineages resulted in increased lymphocyte counts, improved immune functions (including antigen-specific responses), and lower toxic metabolites. Both patients are currently at home and clinically well, with normal growth and development. These results indicate the safety and efficacy of HSC gene therapy combined with nonmyeloablative conditioning for the treatment of SCID.     

Radar soundings of the subsurface of Mars

The martian subsurface has been probed to kilometer depths by the Mars Advanced Radar for Subsurface and Ionospheric Sounding instrument aboard the Mars Express orbiter. Signals penetrate the polar layered deposits, probably imaging the base of the deposits. Data from the northern lowlands of Chryse Planitia have revealed a shallowly buried quasi-circular structure about 250 kilometers in diameter that is interpreted to be an impact basin. In addition, a planar reflector associated with the basin structure may indicate the presence of a low-loss deposit that is more than 1 kilometer thick.     

Synthesis and structure determination of the hierarchical meso-microporous zeolite ITQ-43

The formation of mesopores in microporous zeolites is generally performed by postsynthesis acid, basic, and steam treatments. The hierarchical pore systems thus formed allow better adsorption, diffusion, and reactivity of these materials. By combining organic and inorganic structure-directing agents and high-throughput methodologies, we were able to synthesize a zeolite with a hierarchical system of micropores and mesopores, with channel openings delimited by 28 tetrahedral atoms. Its complex crystalline structure was solved with the use of automated diffraction tomography.     

Sampling variation in genetic resources of seed crops: a review

Summary The first explorations for the collection of genetic resources of crop plants took place in areas designated as centers of origin. Later, important characters were found to be present in areas other than those indicated by Vavilov. Hence collection missions were extended to cover other areas in addition to the centers of diversity with different ecogeography and agromorphological features. Collecting activities were aimed not only at providing germplasm for immediate use in breeding but also at conserving genetic variation for future contingencies. The analysis of the collected material has revealed the complex nature, amount and distribution of genetic variation present in natural populations as well as in landraces, old varieties and primitive forms. The study of variation for characters from different regions indicated that it is possible to select certain characters for detecting variability in the populations and establishing the minimum number of genotypes to be sampled. A minimum number of 20–130 plants per sample, depending on the crop, is recommended in order to capture 95% of the total variation in the field. However, it has been emphasized that the number of different populations sampled rather than the sample size per population determines the overall efficiency of a collection. The findings reported allow better utilization of the collected material and formulation of optimal and cost-effective sampling strategies for the future.     

RFLP analysis of Aegilops species belonging to the Sitopsis section

The phylogenetic relationships among theAegilops species belonging to the Sitopsis section were investigated using RFLP (restriction-fragment-length polymorphism) analysis. Twenty-five probes, each of which hybridised to oneor more restriction fragments located in the B-genomechromosomes of cultivated wheats, were used. At least one and in most cases two fragments were located in every B genome chromosome arm. Adendrogram derived from a cluster analysis of the complete RFLP dataset showed a subdivision of the species belonging to the Sitopsis section into one group comprising the species of the Truncata subsection and another group comprised of the species of theEmarginata subsection. Dendrograms also were produced using RFLP data from loci located in different combinations of only three chromosomes, and some of these showed different subdivisions of the species. This demonstrates the importance in obtaining reliable classification data of using probes that detect loci evenly distributed in the genome and located in each chromosomearm.     

Genetic variation of the durum wheat landrace Haurani from different agro-ecological regions

The durum wheat landrace Haurani (Triticum durum Desf.) is grown under contrasting climatic regions of Syria from Deir Ezzor, in the North-East (230 m altitude, 150 mm mean annual rainfall), to Qunaytra, in the South-West (1060 m altitude, 825 mm mean annual rainfall). In order to assess the genetic variation between and within Haurani populations, samples from eight provinces of Syria (Daraa, Damascus, Qunaytra, Deir Ezzor, Hassakeh, Aleppo, Homs and Hama) were analysed by RFLPs and seed storage proteins of glutenin subunits as markers. The analyses showed the presence of genetic polymorphisms in all populations with the highest values in those from Homs and Hassakeh. Moreover, the results point out differences in genetic distances between populations; some populations were further apart, such as Damascus and Aleppo, whereas others were closer to each other, for instance Homs and Hama. Cluster analysis identified two distinct groups of populations, characterized by geographical proximity, with similar rainfall and altitude. It is suggested that the similarity of landraces at locations close to each other might be the result of more frequent seed exchanges between farmers or of gene flow due to 5% estimated outcross rate of Haurani.     

Generation of leaf shape through early patterns of growth and tissue polarity

A major challenge in biology is to understand how buds comprising a few cells can give rise to complex plant and animal appendages like leaves or limbs. We address this problem through a combination of time-lapse imaging, clonal analysis, and computational modeling. We arrive at a model that shows how leaf shape can arise through feedback between early patterns of oriented growth and tissue deformation. Experimental tests through partial leaf ablation support this model and allow reevaluation of previous experimental studies. Our model allows a range of observed leaf shapes to be generated and predicts observed clone patterns in different species. Thus, our experimentally validated model may underlie the development and evolution of diverse organ shapes.     

Gap disturbances and regeneration patterns in a Bosnian old-growth forest: a multispectral remote sensing and ground-based approach

Objectives

We examined canopy gap structure and regeneration patterns at the landscape scale using a combination of remote sensing and field-based surveys.

Methods

The study was carried out in the forest reserve of Lom, an old-growth Fagus-Abies-Picea forest located within the Dinaric Alps in the north-western part of Bosnia and Herzegovina. A high-resolution (1-m panchromatic and 4-m multispectral) Kompsat-2 satellite image was orthorectified and classified through an unsupervised pixel-based classification using an artificial neural network method.

Results

This approach allowed the identification of 650 canopy gaps, ranging in size from 32 to 1,776?m². Only 20 intermediate to large gaps (>250?m²) were identified, and they were mainly present near the perimeter of the reserve. The origin of these large openings was associated with past human-caused disturbances or topographic conditions. The species composition of regeneration within large, human-caused gaps differed markedly from small gaps and non-gap sites in the core area of the reserve. Shade-intolerant species dominated the seedling and sapling layers in large openings. The landscape approach employed in this study confirmed the hypothesis that small gaps predominate at Lom, especially within the core area of the reserve.