Comparative analysis of genetic diversity in Citrus germplasm collection using AFLP,SSAP, SAMPL and SSR markers

In this study we evaluate the informativeness and efficiency of Amplified Fragment Length Polymorphism (AFLP), Sequence-Specific Amplified Polymorphism (S-SAP), Selectively Amplified Microsatellite Polymorphic Loci (SAMPL) and Simple Sequence Repeat (SSR) markers for genetic diversity, phylogenetic relationship among the Citrus species and mapping ability of the marker system. The SSR exhibited relatively higher level of polymorphism information content in terms of the expected heterozygosity, than that of the AFLPs, SSAPs and SAMPLs. For each marker system, average level of the discriminating potential was very close to the actual discriminating potential. Similarity matrices showed weak, yet significant correlations when Mantel's test was applied. The highest positive (0.72) correlation was found between the AFLP and SSAP markers. The SSR and SAMPL markers were poorly correlated. The dendrogram topology among the four marker systems had high similarity. Taken together, the SSAP and SAMPL were highly efficient in detecting genetic similarity in Citrus, while the SSR may be more useful for segregation studies and genome mapping in Citrus. The SSAP and SAMPL markers could be useful for Citrus genome mapping in combination with AFLP and SSR markers. To our knowledge, this was the first detail report of a comparison of performances among AFLP, SSR and retrotrasposon based molecular marker technique on a set of samples of Citrus. Our result provides guidance for future efficient use of these molecular methods in genetic analysis of Citrus sp. and its relatives.     

Electrophoretic patterns of acid soluble proteins and active isoforms of peroxidase and polyphenoloxidase typifying calli and somatic embryos of two reputed date palm cultivars in Morocco

Summary When subjected to micropropagation by tissue culture, the two reputed cultivars of date palm (Phoenix dactylifera L.); Bou-Sthammi noire, resistant to Bayoud disease and Bou-Feggous, of high fruit quality, give rise to three types of calli, called white and root-forming callus, hyperhydric and degenerating callus and friable and embryogenic callus. All explant sources, calli and germinated embryos were analysed by denaturing polyacrylamide gel electrophoresis (SDS-PAGE) for acid soluble protein composition. Phenol-oxidizing enzymes; peroxidase and polyphenoloxidase, were also, evaluated and the isoforms separated by polyacrylamide gel electrophoresis. When compared with the explant and germinated embryos, embryogenic calli of the two date palm cultivars could be identified by a concentrated polypeptide of molecular weight 27 500 and polypeptides of molecular weights 70 000 and 11 500. Hyperhydric and degenerating callus contained the polypeptide exhibiting the molecular weight 32 000. Embryogenic calli showed high levels of soluble, ionically and covalently bound peroxidases. The soluble acidic isoperoxidase of R _f 0.60, revealed in these calli and germinated embryos could be a marker of the two tissues. White and root-forming calli of Bou-Feggous cultivar were typified by soluble acidic isoperoxidases with high mobility (R _f 0.75) and anodic ionically wall-bound polyphenoloxidases similar to those of the explant sources. Polyphemoloxidase activities detected in calli and embryos were very low when compared with those of explants. Used as an early test to screen embryogenic calli of date palm, acid soluble proteins, peroxidase and polyphenoloxidase data could lead to introduce lightening and economy in the tissue culture technique.     

The occurrence of 2n-pollen and the origin of sexual polyploids in dihaploid roses (Rosa hybrida L.)

Haploidisation by in situ parthenogenesis of 4x R. hybrida resulted in the production of some dihaploid roses (2n=2x=14) able to produce viable pollen. A cytological study of microsporogenesis revealed that, although the first meiotic reductional division occurred normally, the second (equational) division was characterised by frequent abnormalities which concerned spindle formation and led to unreduced gametes of First Division Restitution (FDR) type. Analysis of the hybrid progeny of a parthenogenetically derived male fertile dihaploid plant revealed a selective advantage of the 2n-pollen, especially in the case of an hybridization with a tetraploid female parent. Moreover, crosses carried out among dihaploid partners always resulted in hybrids with ploidy levels≥ 3x. This revised version was published online in July 2006 with corrections to the Cover Date.     

Screening techniques and sources of resistance against parasitic weeds in grain legumes

Summary A number of parasitic plants have become weeds, posing severe constraints to major crops including grain legumes. Breeding for resistance is acknowledged as the major component of an integrated control strategy. However, resistance against most parasitic weeds is difficult to access, scarce, of complex nature and of low heritability, making breeding for resistance a difficult task. As an exception, resistance against Striga gesnerioides based on a single gene has been identified in cowpea and widely exploited in breeding. In other crops, only moderate to low levels of incomplete resistance of complex inheritance against Orobanche species has been identified. This has made selection more difficult and has slowed down the breeding process, but the quantitative resistance resulting from tedious selection procedures has resulted in the release of cultivars with useful levels of incomplete resistance. Resistance is a multicomponent event, being the result of a battery of escape factors or resistance mechanisms acting at different levels of the infection process. Understanding these will help to detect existing genetic diversity for mechanisms that hamper infection. The combination of different resistance mechanisms into a single cultivar will provide durable resistance in the field. This can be facilitated by the use of in vitro screening methods that allow highly heritable resistance components to be identified, together with adoption of marker-assisted selection techniques.     

Genetic control of some polymeric glutenin fractions in hexaploid wheat (Triticum aestivum)

Reciprocal crosses were made between seven different hexaploid wheat genotypes. Hybrid kernels and their parents were used to determine the amount of polymeric glutenin fractions by size-exclusion high-performance liquid chromotography (SE-HPLC) analysis. Quantitative aspects of the genetic control for various glutenin fractions were investigated through diallel cross analysis. The association between the potential effect on hexaploid wheat quality of various allelic types and the quantitative expression of the polymeric glutenin fractions was confirmed. Significant average heterosis effects were demonstrated for insoluble glutenin (pFi), total soluble and insoluble glutenin (pF1 + pF2 + pFi) and the ratio of soluble to insoluble glutenin, (pF1 + pF2)/pFi. Some genotypes showed significant positive or negative combining abilities and general reciprocal effects for the glutenin fractions studied. For gluten quality, ‘Qualital’ was the best combiner for determining an optimal glutenin composition (high values for pFi and pF1 + pF2 + pFi and low values for pF1/pF2 and (pF1 + pF2)/pFi, respectively). These results should be of great interest in breeding programmes aimed at improving hexaploid wheat quality.     

Genetic nature of bacterial wilt resistance in tomato (lycopersicon esculentum Mill.) accession La 1421

The genetic nature of bacterial wilt resistance in tomato was studied in two crosses based on the number of days of survival (quantitative) in the field before the appearance of wilt symptoms. Significant differences were observed between generation means in both crosses (LA 1421 × Cascade and LA 1421 × Caraibo). This study indicates that resistance identified in Lycopersicon esculentum var. cerasiforme LA 1421 may be different from that derived from L. pimpinellifolium. However, the genetic mechanism seems to be complex with a duplicate form of epistasis. Results suggest that selection for resistance from crosses between LA 1421 and Cascade should preferably be delayed until a high level of fixation of genes is attained. The variation observed in the F₂ and BC₂ progeny of the Caraibo cross, suggested that genetic combination between the two resistance sources can lead to higher levels of resistance. This revised version was published online in July 2006 with corrections to the Cover Date.     

Identification and antioxidant potential of flavonoids and low molecular weight phenols in olive cultivar chemlali growing in Tunisia

Increasing interest in phenolic compounds in olives is due to their antioxidant and health-enhancing properties. In this study the phenolics in fruits of the Tunisian olive cultivar Chemlali were extracted by methanol-water and fractionated using Sephadex LH-20 column chromatography. The identification of phenolic monomers and flavonoids was based on separation by high-performance liquid chromatography equipped with a diode array detector followed by liquid chromatography-mass spectrometry and gas chromatography-mass spectrometry analysis. Oleuropein, a secoiridoid glycoside esterified with a phenolic acid, was the major compound. Eight phenolic monomers and 12 flavonoids were also identified in Chemlali olives. Five flavonoids were isolated and purified using Sephadex LH-20 column chromatography and preparative paper chromatography. The antioxidant activity of the extract and the purified compounds was evaluated by measuring the radical scavenging effect on 1,1-diphenyl-2-picrylhydrazyl and by using the beta-carotene-linoleate model assay. Acid hydrolysis of the extract enhanced its antioxidant activity. Hydroxytyrosol and quercetin showed antioxidant activities similar to that of 2,6-di-tert-butyl-4-methylphenol. A hydroxyl group at the ortho position at 3' on the B ring of the flavonoid nucleus could contribute to the antioxidant activity of the flavonoids.     

Effect of Crop Rotations and Continuous Fertilization on the Status of Silicon (Si) Available in Soil in a 97-Year Permanent Experiment

ABSTRACT

This work aims to study the status of silicon (Si) as a plant nutrient in the soil of Bahtim long-term field experiment in Egypt under the effect of crop rotations system and continuous fertilization. The experiment has been set up since 1912 based on two main factors: (1) crop rotations: mono-cropping (MC), two-year rotation (2Y-R), and three-year rotation (3Y-R), and (2) Fertilization: mineral nitrogen N, phosphorus P, potassium K, and organic farmyard manure FYM. Available N, P, K, and Si in soil were estimated. Productivity of soil was evaluated using Berseem (Trifolium alexndrinum L.) cultivated and harvested in 2019. The plant-available Si (PAS) in soil decreased significantly compared to the control C in case of MC by 70.26%, 2Y-R by 85.09%, and 3Y-R by 92.65% in the direction of N > NP > NPK. Mineral fertilization decreased the PAS significantly by 12.84% N, 29.52% NP, 78.45% NPK compared to the control C in the order of MC > 2Y-R > 3Y-R. Berseem yield (t ha^?1) increased significantly compared with the control C following the order C < N < NP < NPK. The most significant increase in the yield was recorded for the NPK treatments by 224.04%, and 200% in case of MC, 2Y-R, 3Y-R, respectively.