Production of specific antibodies against SARS-coronavirus nucleocapsid protein without cross reactivity with human coronaviruses 229E and OC43

Severe acute respiratory syndrome (SARS) is a life-threatening disease for which accurate diagnosis is essential. Although many tools have been developed for the diagnosis of SARS, false-positive reactions in negative sera may occur because of cross-reactivity with other coronaviruses. We have raised polyclonal and monoclonal antibodies (Abs) using a recombinant form of the SARS virus nucleocapsid protein. Cross-reactivity of these anti-SARS Abs against human coronavirus (HCoV) 229E and HCoV OC43 were determined by Western blotting. The Abs produced reacted with recombinant SARS virus nucleocapsid protein, but not with HCoV 229E or HCoV OC43.     

Metabolic Fingerprinting in Toxicological Assessment Using FT-ICR MS

Detection of the toxicity of a candidate compound at an early stage of drug development is an emerging area of interest. It is difficult to determine all of the effects of metabolism of a compound using traditional approaches such as histopathology and serum biochemistry. The goal of a metabolomics approach is to determine all metabolites in a living system, with the potential to detect and identify biomarkers involved in toxicity onset. Here, we summarize the metabolic fingerprints for detection and identification of metabolic changes and biomarkers related to drug-induced toxicity using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS).     

Cholesterolaemia and triacylglycerolaemia in farmed rainbow trout,Oncorhynchus mykiss

Physiological (reference) value intervals determined by the lower 2.5% and upper 97.5% quantiles were calculated for blood plasma cholesterol (CHOL) and triacylglycerol (TGL) in farmed rainbow trout, Oncorhynchus mykiss, in raceway culture. The fish were given dry pelleted diets that contained 37–47% crude protein and 7–14% crude fat and were kept at a stocking density of 50 kg m^?3 in tanks provided with running freshwater at an ambient temperature of 3–16°C and dissolved oxygen, 8.4–11.5 mg L^?1. Blood was sampled between September and November at a photoperiod of 9:00–13:00 hours: 11:00–15:00 hours (light:dark). Cholesterol levels were significantly (P = 0.0001) greater in males (4.7–12.1 mmol L^?1, n = 34, mean weight 406 ± 138 g) than immature females (3.2–9.7 mmol L^?1, n = 386, mean weight 416 ± 147 g). Physiological range for TGL in immature females and males was 2.4–14.4 mmol L^?1 (n = 249, mean weight 418 ± 149 g). The distribution and density of the quantiles in the tested reference group were made possible by the use of histograms, which showed normal distributions for CHOL in males and in females, but not for TGL, in which a sinistral asymmetry was found. Correlation and regression analyses indicated significant (P = 0.0000) dependence between the CHOL and total protein (r² = 76.2%), CHOL and Fulton's condition factor (r² = 43.3%) and CHOL and absolute weight of liver (r² = 45.5%). Fluctuation in cholesterolaemia and triacylglycerolaemia, depending on nutrition and the aquaculture method is discussed below.     

Effects of panicle development stage and temperature on rice panicle blast infection by Magnaporthe oryzae and visualization of its infection process

Panicle blast, caused by the fungus Magnaporthe oryzae (syn. Pyricularia oryzae), directly contributes to yield loss in the field. The effects of panicle development stage and temperature on panicle blast were studied and the infection process of M. oryzae in panicles was visualized. Rice panicles at different development stages from three rice cultivars were inoculated with a conidial suspension in vitro. The rice cultivar Lijiangxintuanheigu was highly susceptible to panicle blast at 5 days postinoculation (dpi) when the pulvinus distance was 15–20 cm. Nanjing 9108 was moderately susceptible to panicle blast when the pulvinus distance was 8–10 cm, but Yliangyou 800 was resistant. The effect of temperature on panicle blast was determined under 22–35 °C temperature treatments. Inoculated panicles placed at temperatures of 28 and 30 °C showed the highest lesion grade based on lesion length at 5 dpi. The infection process of M. oryzae in rice panicles was observed by confocal laser scanning microscopy (CLSM) and transmission electron microscopy (TEM). M. oryzae initially formed the appressorium to invade through the epidermis of rice panicles at 24 hours postinoculation (hpi). As the disease progressed, the invasive hyphae formed dense mycelial networks in the inner parenchyma cells at 60 hpi. Our results will contribute to the understanding of panicle development stage and temperature effects on panicle blast and improve resistance evaluation methods. Additionally, visualization of the infection process by CLSM and TEM are valuable methods to observe M. oryzae invasive hyphae inside rice panicle cells.     

Ameliorative effect of K-type and Ca-type artificial zeolites on the growth of beets in saline and sodic soils

Abstract

Beets were grown on soils with various exchangeable sodium percentages (ESP). A saline non-sodic soil (SA, ESP = 3.2), a saline sodic soil (SO, ESP = 23), and a saline high sodic soil (HSO, ESP = 78) were prepared from Tottori sand dune soil (CO). K-type and Ca-type artificial zeolites (50 g kg^?1) were applied to these soils in order to evaluate their effects on the chemical properties of saturation extracts of the soils, water deficit, cation uptake and transport, and cation balance of beet plants. In the zeolite-free treatments, beet growth was accelerated in SA and SO, but was suppressed in HSO compared with CO. The addition of both types of zeolites ameliorated plant growth in all the soils studied, especially HSO. The relative dry weight of the soils treated by the K-type zeolite to the zeolitefree soil was 189% for CO, 125% for SA, 130% for SO, and 222% for HSO. For the soils treated with the Ca-type zeolite, the values were 169, 116, 132, and 341%, respectively. In SA, SO, and HSO, the addition of the K-type zeolite increased the K uptake due to the increase of the K concentration of saturation extracts of soils. The addition of the Ca-type zeolite increased the Ca uptake due to the increase in the Ca concentration of the saturation extracts of soils which was accompanied by an increase in the K uptake. The increase in the uptake of K or Ca and decreased in the transport of Na by the addition of both types of zeolites improved the cation balance of the plants. The Ca-type zeolite did not increase the water deficit even though it increased the electric conductivity in all the soils. The results indicated that both types of artificial zeolites were able to improve the growth performance of beets in saline and sodic soils and that the K-type zeolite could be used as a K-fertilizer as well.     

Nutritional characteristics of sago palm and oil palm in tropical peat soil

To make clear the nutritional characteristics of sago palm (Metroxylon sagu Rottb.) and oil palm (Elaeis guineensin Jacq.) grown in tropical peat soil, minerals concentration, organic compounds concentration, and photo‐synthetic rate were estimated, and the obtained results were as follows. Since, the nitrogen (N), phosphorus (P), calcium (Ca), magnesium (Mg), and sodium (Na) concentration in mature leaves and trunk were higher in the oil palm than in the sago palm, but potassium (K) concentration was higher in the sago palm than in the oil palm, the minerals (especially N, P, Ca, and Mg) requirement for the oil palm were higher than in the sago palm. This indicates that the sago palm will adapt better than the oil palm to soils with poor nutrients. The manganese (Mn) and zinc (Zn) concentration in leaves of the sago palm and Ca and aluminum (Al) concentration in leaves of the oil palm increased with the increase of aging, indicating that those elements are eliminated from plants through leaf senescence. In the sago palm, the N and P distribution ratio to leaves remained almost constant during growth, indicating that N and P were predominantly distributed to leaves for maintaining leaf function. The photosynthetic rate [μmole carbon dioxide (CO₂) m² LA sec^‐1] at light saturation was lower in the sago palm (5.8) and oil palm (10.0) than in wheat (25.4). As leaf longevity of sago and oil palms was longer (about 12 times) than that of wheat (Triticum aevstium L.), and the minerals concentration and photosynthetic rate remained constant for a long duration of growth, the cumulative carbon (C) accumulation per unit dry weight (photosynthetic rate x leaf longevity) in the individual leaf is assumed to be equal or greater than that of wheat. The photosynthetic ability of sago and oil palms leaves is very important for understanding why sago and oil palms have high productivity in spite of a low nutrient environment.     

酵母重复基因在蛋白质互作网络中的分歧进化

【目的】分析全基因组重复后,蛋白质互作网络对重复基因分歧模式的作用机制。【方法】结合高精度的蛋白质互作数据集和具有相同进化年代的重复基因数据集,在全基因组范围关联分析拷贝间进化距离与网络结构的相关性,并通过对拷贝间连接水平的差异程度分类,分析不同阶段网络结构对基因功能的影响。【结果】重复基因两拷贝间的进化距离与其祖先基因在网络中的连接水平呈显著负相关,与重复基因间的连接度差异率呈显著正相关;网络结构完全歧化的重复基因间的非同义替换均值,较未完全歧化的重复基因显著高出30.2%。【结论】网络结构对重复基因的进化起调节作用,网络系统在保持核心稳定的同时,使外围组分发生了更大变化;重复基因在网络结构改变的前期为基因组提供功能冗余,但在网络结构差别较大后,显著增加的突变更有利于基因新功能的产生。     

Role of small-scale fishing in Kompong Thom Province, Cambodia

ABSTRACT:   Household surveys of small-scale fishing were conducted in Svay Ear and Srey Rangit villages in Kompong Thom Province, Cambodia. Data were collected from 104 of 183 households and 105 of 140 households in Svay Ear and Srey Rangit, respectively. In both villages, almost all households conducted rice cultivation and approximately 75% of them also conducted fishing. Three fishing groups: (i) inside lake; (ii) around lake; and (iii) around village were observed in both villages, according to their main fishing grounds. The inside lake group conduct fishing only in Tonle Sap Lake which is located 30 km away from the villages. The around lake group fish in lakes, marshes and flooded forests adjacent to Tonle Sap Lake, which are more than 5 km from the villages. The around village group collects fish from rice fields and ponds located inside the villages and also in some streams, rivers and lakes adjacent to the villages. The distance to the fishing grounds is less than 5 km from the villages. Most fishing groups were the inside and around lake groups, which occupied 76.0 and 65.7% of Svay Ear and Srey Rangit, respectively. These two groups produced 80.6 and 69.7% of the respective village annual total fish catches. These two groups sold a large portion of their fish catches. Although previous reports indicated that small-scale fishing is for subsistence, present results indicated that small-scale fishing was commercially conducted and fishing was important as an income source.     

The critical role of biofilms in bacterial vascular plant pathogenesis

Bacterial life is a combination of two lifestyles, mobile and social. In the social lifestyle, cells are usually embedded in a self-produced matrix and attached to biotic or abiotic surfaces. These communities can be organized as either single or multilayered structures termed biofilms. Biofilms evolved to cope with the harsh environmental conditions that bacteria encounter within the host, mostly from the host’s defence response. In plant pathogenic bacteria, biofilms participate in the whole process of pathogenicity, from the first step of invasion to the full colonization of plant tissues. The specific role that biofilms play in the pathogenicity process of plant bacterial pathogens is poorly understood. In this review, the role of biofilms in the pathogenic process of major vascular plant pathogens is examined. In addition, quorum sensing signals and components that are essential for biofilm formation and therefore, for pathogenesis, are addressed. Although, in certain systems, further research is required, experimental evidence in the literature indicates that biofilms are, in most cases, essential for pathogenesis.