A comparison of the antigenicity of the extracellular products and whole-cell sonicates from Mycobacterium spp. in rabbits, mice and fish by immunoblotting and enzyme-linked immunosorbent assay

The antigenicity of extracellular products (ECPs) derived from Mycobacterium spp. isolated from snakehead, Channa striata (Bloch), and Siamese fighting fish, Betta splendens (Regan), were examined by immunoblotting and enzyme-linked immunosorbent assay (ELISA) using sera collected from immunized rabbits, mice and fish (rainbow trout). All three species responded to a 65-kDa protein present in both the ECPs and whole cell sonicates (WCSs) from a variety of Mycobacterium spp. Cross-reactivity of anti- M. tuberculosis and anti-human heat-shock protein monoclonal antibodies (MAbs), and the presence of fibronectin binding proteins secreted into ECPs of mycobacteria were also examined. The MAbs against human 60-kDa heat-shock protein cross- reacted with the band at 65 kDa in the ECPs of TB1 (isolated from snakehead fish) and the type strain M. marinum, while the anti- M. tuberculosis MAb F29–47 elicited a strong reaction with a band at 21 kDa with most of the ECPs from mycobacterial strains examined. The major fibronectin-binding proteins were located between 21 and 25 kDa. The 65-kDa protein from ECPs of Mycobacterium spp. proved strongly immunogenic to rabbits, mice and fish. Rabbit antiserum against the 65-kDa protein from strain TB267 reacted with many non- Mycobacterium WCSs, and therefore, the 65-kDa protein from Mycobacterium spp. is believed to be a common protein found in many fish bacterial pathogens.     

The type of activated carbon determines how much dissolved organic carbon is removed from artificial seawater

Four granular activated carbons (GACs) made of different materials were tested for removal of dissolved organic carbon (DOC) from artificial seawater of a recirculated aquarium. After 70 days in a continuous flow experiment, comparative removal data (grams of GAC required to remove 1 g of DOC) were coconut shell (491), hardwood (84·4), anthracite (837) and bone char (383), indicating the superior performance of hardwood. Scanning electron microscopy showed that microbial colonization of a sample material (hardwood) was slight and occurred exclusively at the surface. Biological enhancement of GAC was considered to be unimportant as a mechanism for DOC removal.     

PROBIT analysis predicts hatching rates of brine shrimp Artemia sp. cysts

Thirty replicates of San Francisco Bay brine shrimp Artemia sp. cysts from one lot were weighed to 0·01 mg. The mean mass of a single cyst was 2·597 μg (±0·040 μg, 95% confidence level). Batches of 1 g from the same lot were hatched in the laboratory, and fraction hatched versus time data were fitted to a nonlinear curve using PROBIT analysis. Median time of hatch was 24·8 h with a standard error of ±3·92 h. Cysts and nauplii in 1-ml aliquots were pipetted at regular intervals and counted under a dissecting microscope. The number of cysts pipetted at the beginning of the experiment was 19% less than estimates based on the known number per volume of hatching medium, indicating that hatching data derived from pipetting procedures may contain large sampling errors. PROBIT analysis allows fraction hatched to be predicted when a particular lot of cysts is hatched under controlled conditions.     

Amoebic gill disease: sequential pathology in cultured Atlantic salmon, Salmo salar L

Amoebic gill disease (AGD) affects the marine culture phase of Atlantic salmon, Salmo salar L., in Tasmania. Here, we describe histopathological observations of AGD from smolts, sampled weekly, following transfer to estuarine/marine sites. AGD was initially detected histologically at week 13 post-transfer while gross signs were not observed for a further week post-transfer. Significant increases (P < 0.001) in the proportion of affected gill filaments occurred at weeks 18 and 19 post-transfer coinciding with the cessation of a halocline and increased water temperature at the cage sites. The progression of AGD histopathology, during the sampling period, was characterized by three phases. (1) Primary attachment/interaction associated with extremely localized host cellular alterations, juxtaposed to amoebae, including epithelial desquamation and oedema. (2) Innate immune response activation and initial focal hyperplasia of undifferentiated epithelial cells. (3) Finally, lesion expansion, squamation-stratification of epithelia at lesion surfaces and variable recruitment of mucous cells to these regions. A pattern of preferential colonization of amoebae at lesion margins was apparent during stage 3 of disease development. Together, these data suggest that AGD progression was linked to retraction of the estuarine halocline and increases in water temperature. The host response to gill infection with Neoparamoeba sp. is characterized by a focal fortification strategy concurrent with a migration of immunoregulatory cells to lesion-affected regions.     

Quantifying and simulating carbon and nitrogen mineralization from diverse exogenous organic matters

The potential contributions of exogenous organic matters (EOMs) to soil organic C and mineral N supply depend on their C and N mineralization, which can be assessed in laboratory incubations. Such incubations are essential to calibrate decomposition models, because not all EOMs can be tested in the field. However, EOM incubations are resource-intensive. Therefore, easily measurable EOM characteristics that can be useful to predict EOM behaviour are needed. We quantified C and N mineralization during the incubation of 663 EOMs from five groups (animal manures, composts, sewage sludges, digestates and others). This represents one of the largest and diversified set of EOM incubations. The C and N mineralization varied widely between and within EOM subgroups. We simulated C and N mineralization with a simple generic decomposition model. Three calibration methods were compared. Individual EOM calibration of the model yielded good model performances, while the use of a unique parameter set per EOM subgroup decreased the model performance, and the use of two EOM characteristics to estimate model parameters gave an intermediate model performance (average RMSE-C values of 32, 99 and 65 mg C g⁻¹ added C and average RMSE-N values of 50, 126 and 110 mg N g⁻¹ added N, respectively). Because of the EOM variability, individual EOM calibration based on incubation remains the recommended method for predicting most accurately the C and N mineralization of EOMs. However, the two alternative calibration methods are sufficient for the simulation of EOMs without incubation data to obtain reasonable model performances.     

Allelic losses and gains during translocations of a high conservation value fish,Coregonus lavaretus

1. The use of translocations to establish new or ‘refuge’ populations for species with high conservation value is controversial but widely used in conservation management. One of the risks of this approach is that an establishing population does not adequately capture the genetic diversity of the donor gene pool. This effect, rarely examined, is tested here.
2. In this study the genetic consequences of two conservation translocations after five generations (16 years) of the European whitefish, Coregonus lavaretus, were quantified. Both translocations were made using almost the same genetic groups and thus represent a partly replicated natural study.
3. Analysis of 12 informative microsatellites showed that expected heterozygosity, the mean number of alleles per locus and allelic richness did not differ between donor and translocated populations. There was also no loss of heterozygosity in the translocated populations, nor deviations from Hardy–Weinberg equilibrium expectations, nor signs of linkage disequilibrium.
4. All populations were genetically differentiated but pairwise F_ST values were low, indicating that the magnitude of divergence was small.
5. There was no evidence of inbreeding but there were significant differences in private allelic richness between donor and translocated populations. Of 50 alleles found in the donor population, 16% of the rarer alleles were lost in one translocated population and 8% in the other.
6. Allele loss without a reduction in heterozygosity strongly points to stochastic drift effects having occurred following translocation. The evidence indicates that alleles that were not detected in the donor population have arisen de novo in the translocated populations.
7. It is concluded that conservation translocations comprising even a modest number of propagules can successfully capture a high proportion of genetic variation of the host population, and that reduced genetic variation in the translocated population may be mitigated by the emergence of new variation over short time periods.

     

Effect of Diets Formulated with Native Peruvian Plants on Growth and Feeding Efficiency of Red Pacu (Piaractus brachypomus) Juveniles

We evaluated the effects of casein‐based semipurified diets, alone or supplemented with native Peruvian plants, on growth, feed efficiency, and histology of the digestive tract of red pacu, Piaractus brachypomus, juveniles over an 8‐wk feeding trial. Three tanks were randomly assigned to one of four casein–gelatin (40:8) diets containing a supplement of 15% wheat meal (control) or an identical level of substitution of three South American native plant as follows: camu‐camu fruit (Myrciaria dubia), aguaje fruit (Mauritia flexuosa), or maca tuber meal (Lepidium meyenii). The fish (initial weight, 2.04 ± 0.06 g) were fed experimental diets at decreasing feeding rates from 4 to 2.6% of body weight. After 8 weeks of feeding, fish fed a diet supplemented with maca meal showed significantly higher (P < 0.05) weight gain, specific growth rate, protein efficiency ratio (PER), apparent net protein utilization (NPU), and instantaneous feed intake than fish fed other diets. Feed conversion ratio (FCR), PER, and NPU in fish fed the casein–gelatin diet supplemented with maca meal were among the best ever reported in the scientific literature, 0.64 ± 0.03, 3.13 ± 0.15 and 23.8 ± 2.0, respectively. The camu‐camu meal had a negative impact on diet palatability and utilization, which resulted in slower growth. The stomach, intestine, pancreas, and pyloric caeca at the start and end of the experiment showed normal differentiation and appearance of cells and tissues. The liver parenchyma showed lipid infiltration and pigment accumulation in all samples at the initiation of the experiment and may be attributed to the period of decreased feed intake prior to the study. At the end of the study, similar histopathologies were recorded in all samples from the control and camu‐camu groups. Normal liver histology (polyhedral hepatocytes with centrally located nuclei) was observed in two of three samples from the maca group and all the samples from the group that was fed the aguaje‐supplemented diet.     

Conservation status of the world's hagfish species and the loss of phylogenetic diversity and ecosystem function

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Opportunity costs: Who really pays for conservation?

Designing conservation areas entails costs that, if considered explicitly, can be minimized while still achieving conservation targets. Here we focus on opportunity costs which measure forgone benefits from alternative land uses. Conservation planning studies often use partial estimates of costs, but the extent to which these result in actual efficiencies has not been demonstrated. Our study partitions land costs into three distinct opportunity costs to smallholder agriculture, soybean agriculture and ranching. We demonstrate that opportunity costs to single stakeholder groups can be inaccurate measures of true opportunity costs and can inadvertently shift conservation costs to affect groups of stakeholders disproportionately. Additionally, we examine how spatial correlations between costs as well as target size affect the performance of opportunity costs to single stakeholder groups as surrogate measures of true opportunity costs. We conclude that planning with opportunity costs to single stakeholder groups can result in cost burdens to other groups that could undermine the long-term success of conservation. Thus, an understanding of the spatial distributions of opportunity costs that are disaggregated to groups of stakeholders is necessary to make informed decisions about priority conservation areas.