Electrophoretic variation in seed proteins and interrelationships of species in the genus <Emphasis Type="Italic">Oryza</Emphasis>

Comparative studies of two cultivated and sixteen wild species of the genus Oryza were carried out using one- and two-dimensional gel electrophoresis for variation in their seed proteins for interrelationships of these species. A number of polypeptides in the range of molecular weight 13–110 kDa were seen to vary. Under reducing conditions, polypeptides spread over the regions of mol. wt. 33–40.5, 25–27 and 19–21.5 kDa exhibited maximum variation in their patterns. Two-dimensional gel electrophoresis revealed the occurrence of disulphide-linked glutelin polypeptide pairs of mol. wt. 60, 58, 52 and 25 kDa breaking into a large and a small subunit each in the range of mol. wt. 18–40.5 and 16–25 kDa respectively in Oryza sativa. The number of such polypeptide pairs varied from 2 to 6 in different species and also in O. sativa showed variation in mol. wts. of their constituent subunits. The UPGMA dendrogram revealed that most of the Oryza species occurred in different clusters and subclusters and thus did not share very close relationships. The undisputed and closest relationship observed was that of cultivated rice O. sativa with the O. rufipogon followed by that with O. nivara. The African cultivated O. glaberrima occurring on the nearest branch of the same subcluster, thereby, supporting the phylogenetic of these species suggested in earlier studies. Eight diploid species and seven tetraploid species were included in one part of the dendrogram while the remaining two species with AA genome i.e. O. glumaepatula and O. meridionalis and one with FF i.e. O. brachyantha stood separately from these as scattered in the group of seven tetraploid species with BBCC, CCDD and HHJJ genomes. The tetraploids O. alta, O. latifolia and O. grandiglumis with CCDD genomes which occurred on the farthest part were distantly related with O. sativa. The cyanogen bromide peptide maps and two dimensional gel electrophoresis also supported the closest relationship between O. sativa and O. rufipogon.     

Hydroxyl Radical Generation and Contaminant Removal from Water by the Collapse of Microbubbles Under Different Hydrochemical Conditions

The present study addresses the mechanism of hydroxyl radical (·OH) generation by the collapse of microbubbles in water solution. The influence of gas supply and flow rate, solution pH, and ionic strength on the aeration efficiency, free radical generation, and contaminant removal (take methylene blue as an example) are elucidated. The results showed that the degradation rate of methylene blue by ·OH increased with flow rate as well as in acidic or alkaline solutions compared to that in neutral conditions. ·OH was shown to be produced by the reaction between protons and oxygen radicals generated by the decomposition of O₂ rather than water molecules. A greater concentration of O₂ or H⁺ thus promoted the reaction, resulting in effective removal at a high flow rate or low pH. Nevertheless, there was considerable methylene blue removal at high pH, driven by the production of the dye cation through the dissociation of methylene blue and the high electronegativity of bubbles at high pH, thus enhancing interface adsorption and degradation, as well as by the high ionic strength of the solution helping to generate ultrafine bubbles and maintaining them through ionic shielding. The current work provides useful insights into the application of microbubble as a promising technique.     

Prevalence of Concentrated Flow Paths in Agricultural Fields in Southern Illinois

Literature on prevalence of concentrated flow paths (CPFs) in agricultural fields are limited at field scale with only few studies that address occurrence of CFPs at large geographic extent. This study used high-resolution Light Detection and Ranging (LiDAR) data to identify CFPs in agricultural fields and calculate the percentage of the fields drained by CFPs at a county scale. In 389 agricultural fields across Jackson County, southern Illinois, this study also investigated the association between field characteristics and CFP formation using multiple regression and CART analysis. The mean number of CFPs in a field was 5 with a minimum of 0 and maximum of 17 CFPs. The majority of the CFPs fell under the large category for CFP length and drainage area that corresponds with high mean percent (81%) of field area drained by the CFPs. Further, 85% of the fields had more than 70% of their area drained by CFPs. The multiple regression and CART analysis showed slope as an important factor influencing CFP characteristics such as number of CFPs and CFP length. Both analyses also indicated physical soil properties such as bulk density, soil erodibility factor, saturated hydraulic conductivity, LS factor, organic matter, and percent sand were also predictors of the CFP characteristics. However, these factors explained only 2 to 12% of the variation observed. The significant presence of CFP’s has important implications for water quality since current conservation practices such as riparian buffers were not designed to address concentrated flow from agricultural fields.     

Peroxicoagulation and Solar Peroxicoagulation for Landfill Leachate Treatment Using a Cu–Fe System

Leachates, particularly those from mature landfills, are difficult to treat by biological processes because of their high toxicity and low biodegradability. Therefore, the development of new treatment technology is necessary. The treatment of landfill leachate by peroxicoagulation and solar peroxicoagulation using a batch electrolytic reactor with a Fe cathode and a Cu anode is proposed. The tested operational variables included pH (2.8 and 8.2), current density (11 and 16 mA cm^?2), treatment time (5, 10, 15, 20, 25, and 30 min), and presence of solar ultraviolet (UV) light and were collected using a compound parabolic collector. The optimum conditions were a pH, current density, and treatment time of 2.8, 16 mA cm^?2, and 10 min, respectively. The presence of UV did not have a significant effect. The chemical oxygen demand and biochemical oxygen demand removed were 62.3% and 55.5%, respectively. The results of UV-visible absorption, fluorescence, and Fourier transform infrared spectroscopy measurements confirm the oxidation process.     

Small Area Estimation of Proportions with Constraint for National Resources Inventory Survey

Motivated by the need to produce small area estimates for the National Resources Inventory survey, we develop a spatial hierarchical model based on the generalized Dirichlet distribution to construct small area estimators of compositional proportions in several mutually exclusive and exhaustive landcover categories. At the observation level, the standard design-based estimators of the proportions are assumed to follow the generalized Dirichlet distribution. After proper transformation of the design-based estimators, beta regression is applicable. We consider a logit mixed model for the expectation of the beta distribution, which incorporates covariates through fixed effects and spatial effect through a conditionally autoregressive process. In a design-based evaluation study, the proposed model-based estimators are shown to have smaller root-mean-square error and relative root-mean-square error than design-based estimators and multinomial model-based estimators. Supplementary materials accompanying this paper appear online.     

Impact of Desalination on Physical and Mechanical Properties of Lanzhou Loess

Soluble salt in soil has a significant influence on the physical and mechanical properties of the soil. We performed desalination experiments on Lanzhou loess, a typical sulfate saline soil, to study the effects of salt on the physical and mechanical properties of the loess and compare variations in the soil properties after desalination. The Atterberg limits of the soil increased after desalination as a result of changes in the soil particle composition and grain refinement. The shear and uniaxial compressive strength of the soil increased as a result of decreased calcitic cementation and other changes to the soil structure. Scanning electron microstructure (SEM) and mercury intrusion porosimetry (MIP) procedures revealed changes to the microstructure and pore-size distribution of the Lanzhou loess after desalination.     

Functional Mapping of Multiple Dynamic Traits

Many biological phenomena undergo developmental changes in time and space. Functional mapping, which is aimed at mapping genes that affect developmental patterns, is instrumental for studying the genetic architecture of biological changes. Often biological processes are mediated by a network of developmental and physiological components and, therefore, are better described by multiple phenotypes. In this article, we develop a multivariate model for functional mapping that can detect and characterize quantitative trait loci (QTLs) that simultaneously control multiple dynamic traits. Because the true genotypes of QTLs are unknown, the measurements for the multiple dynamic traits are modeled using a mixture distribution. The functional means of the multiple dynamic traits are estimated using the nonparametric regression method, which avoids any parametric assumption on the functional means. We propose the profile likelihood method to estimate the mixture model. A likelihood ratio test is exploited to test for the existence of pleiotropic effects on distinct but developmentally correlated traits. A simulation study is implemented to illustrate the finite sample performance of our proposed method. We also demonstrate our method by identifying QTLs that simultaneously control three dynamic traits of soybeans. The three dynamic traits are the time-course biomass of the leaf, the stem, and the root of the whole soybean. The genetic linkage map is constructed with 950 microsatellite markers. The new model can aid in our comprehension of the genetic control mechanisms of complex dynamic traits over time.     

<Emphasis Type="Italic">Oryza sativa</Emphasis> straw restricts <Emphasis Type="Italic">Phalaris minor</Emphasis> growth: allelochemicals or soil resource manipulation?

Unharvested stubbles or harvested straw of rice (Oryza sativa L.) gets incorporated into soil and interferes with the seedling growth of crop plants. In this paper, we investigated whether rice straw, either through releasing allelochemicals and/or through manipulating soil properties, influences seedling growth of Phalaris minor Retz., a non-native weed largely restricted to wheat (Triticum aestivum L.) fields. One hundred twenty grams of soil was amended with rice straw (0.5, 1, 2, 4, or 6 g/pot) and its effect on fresh shoot biomass of P. minor was examined. Any modification of rice straw phytotoxicity through the use of washed rice straw, activated charcoal, soil sterilization, or nitrogen fertilization was also studied. We carried out chemical and microbial analysis of soils to examine the role of soil properties in influencing P. minor growth. Incorporation of rice straw into soil suppressed the growth of P. minor through modifying soil properties. A dose-dependent increase in total phenolics was observed in soil amended with rice straw. Activated carbon or washing of rice straw, however, could not ameliorate the phytotoxic effects of rice straw. Our results provide initial evidence that rice straw restricts P. minor growth by manipulating soil chemical and microbiological properties. Authors contributions IJ conceived of and supervised the study, and wrote the paper; SK carried out the work.     

Conservation in a changing world: <Emphasis Type="Italic">in situ</Emphasis> conservation of the giant maize of Jala

Using survey data from Jala, Mexico, this case-study evaluates in situ maize conservation of the variety ‘Jala’ (Zea mays L.). Though historically ‘Jala’ was the dominant variety grown in the valley of Jala, today less than 20% of farmers grow it on only 5% of the maize area. Younger growers of the ‘Jala’ variety specialize in it, growing relatively large amounts for niche markets. Older, diversified farmers grow small areas for household use and to compete in a local contest. Conservation of the ‘Jala’ variety has been heavily influenced by shifting ideal concepts of maize, as determined by market and consumption demands and by a contest designed to promote in situ conservation. The current move away from nationalized purchasing may favor ‘Jala’s’ continued conservation.