Bioassays and application of olive pomace compost on emmer: effects on yield and soil properties in organic farming

Abstract

Composting olive oil pomace could solve the problem of disposal, by recycling this organic waste for agricultural purposes. Furthermore, application of composted organic waste could be a way to sustain both soil fertility and production, especially in organic farming. Therefore, the aim of this research was to evaluate the phytotoxicity and the effects of application of olive pomace composts on emmer performance and soil properties. Two types of olive pomace composts, with a different initial C/N ratio, were stopped at the active phase and processed until maturation. The obtained four olive pomace composts were compared with a commercial fertilizer in a two-year field experiment. Before the field trial, a bioassay was performed to assess phytotoxicity both for the raw pomace and the not-stabilized composts. Growing and yielding data for emmer were determined during the two-year period and soil characteristics were measured at the start and at the end of the experiment.

The composts were not phytotoxic (germination index was higher than 90%) and their total organic carbon content was always higher than the minimum values established by the Italian fertilizers legislation. The emmer protein content was significantly higher in the matured compost treatment with low C/N, than in the other compost treatments. Its value was comparable with that of the commercial fertilizer, suggesting a good performance on crop yield quality. Although not significant, this compost showed an increase of 9.8% in grain yield compared with commercial fertilizer treatment. On the whole, it can be suggested that repeated compost application might preserve the soil organic carbon content and supply macronutrients to a crop.     

Co-inoculation of soybeans and common beans with rhizobia and azospirilla: strategies to improve sustainability

Plant–microorganism associations have long been studied, but their exploitation in agriculture partially or fully replacing chemical fertilizers is still modest. In this study, we evaluated the combined action of rhizobial and plant growth-promoting rhizobacteria inoculants on the yields of soybean and common bean. Seed inoculation with rhizobia (1.2?×?10⁶ cells seed^?1) was compared to co-inoculation with Azospirillum brasilense in-furrow (different doses) or on seeds (1.2?×?10⁵ cells seed^?1) in nine field experiments. The best in-furrow inoculant dose was 2.5?×?10⁵ cells of A. brasilense seed^?1 for both crops. Inoculation with Bradyrhizobium japonicum increased soybean yield by an average 222 kg?ha^?1 (8.4 %), and co-inoculation with A. brasilense in-furrow by an average 427 kg?ha^?1 (16.1 %); inoculation always improved nodulation. Seed co-inoculation with both microorganisms resulted in a mean yield increase of 420 kg?ha^?1 (14.1 %) in soybean relative to the non-inoculated control. For common bean, seed inoculation with Rhizobium tropici increased yield by 98 kg?ha^?1 (8.3 %), while co-inoculation with A. brasilense in-furrow resulted in the impressive increase of 285 kg?ha^?1 (19.6 %). The cheaper, more sustainable inoculated treatment produced yields equivalent to the more expensive non-inoculated + N-fertilizer treatment. The results confirm the feasibility of using rhizobia and azospirilla as inoculants in a broad range of agricultural systems, replacing expensive and environmentally unfriendly N-fertilizers.     

Campylobacter jejuni in the red squirrel (Sciurus vulgaris) population of Southern Italy

Rectal swab samples were collected from 60 red squirrels (Sciurus vulgaris) from July 2006 to April 2007 in Southern Italy. Samples were tested for Campylobacter jejuni and C. coli by culture methods and suspected colonies were then confirmed by polymerase chain reaction. C. jejuni was detected in 5/60 (8.3%) samples examined but infection status was not related to age or sex and C. coli was not isolated. This is believed to be the first report of C. jejuni infection in the red squirrel.     

Three decades of soil microbial biomass studies in Brazilian ecosystems: Lessons learned about soil quality and indications for improving sustainability

Soil microbial biomass plays important roles in nutrient cycling, plant-pathogen suppression, decomposition of residues and degradation of pollutants; therefore, it is often regarded as a good indicator of soil quality. We reviewed more than a hundred studies in which microbial biomass-C (MB-C), microbial quotient (MB-C/TSOC, total soil organic carbon) and metabolic quotient (qCO₂) were evaluated with the objective of understanding MB-C responses to various soil-management practices in Brazilian ecosystems. These practices included tillage systems, crop rotations, pastures, organic farming, inputs of industrial residues and urban sewage sludge, applications of agrochemicals and burning. With a meta-analysis of 233 data points, we confirmed the benefits of no-tillage in preserving MB-C and reducing qCO₂ in comparison to conventional tillage. A large number of studies described increases in MB-C and MB-C/TSOC due to permanent organic farming, also benefits from crop rotations particularly with several species involved, whereas application of agrochemicals and burning severely disturbed soil microbial communities. The MB-C decreased in overgrazed pastures, but increased in pastures rotated with well-managed crops. Responses of MB-C, MB-C/TSOC and qCO₂ to amendment with organic industrial residues varied with residue type, dose applied and soil texture. In conclusion, MB-C and related parameters were, indeed, useful indicators of soil quality in various Brazilian ecosystems. However, direct relationships between MB-C and nutrient-cycling dynamics, microbial diversity and functionality are still unclear. Further studies are needed to develop strategies to maximize beneficial effects of microbial communities on soil fertility and crop productivity.     

Microbial biomass and activity at various soil depths in a Brazilian oxisol after two decades of no-tillage and conventional tillage

The advantages of no-tillage (NT) over conventional tillage (CT) systems in improving soil quality are generally accepted, resulting from benefits in soil physical, chemical and biological properties. However, most evaluations have only considered surface soil layers (maximum 0-30 cm depth), and values have not been corrected to account for changes in soil bulk density. The objective of this study was to estimate a more realistic contribution of the NT to soil fertility, by evaluating C- and N-related soil parameters at the 0-60 cm depth in a 20-year experiment established on an oxisol in southern Brazil, with a soybean (summer)/wheat (winter) crop succession under NT and CT. At full flowering of the soybean crop, soil samples were collected at depths of 0-5, 5-10, 10-20, 20-30, 30-40, 40-50 and 50-60 cm. For the overall 0-60 cm layer, correcting the values for soil bulk density, NT significantly increased the stocks of C (18%) and N (16%) and microbial biomass C (35%) and N (23%) (MB-C and -N) in comparison to CT. Microbial basal respiration and microbial quotient (qMic) were also significantly increased under NT. When compared with CT, NT resulted in gains of 0.8 Mg C ha⁻¹ yr⁻¹ (67% of which was in the 0-30 cm layer) and 70 kg N ha⁻¹ yr⁻¹ (73% in the 0-30 cm layer). In the 0-5-cm layer, MB-C was 82% higher with NT than with CT; in addition, the 0-30 cm layer accumulated 70% of the MB-C with NT, and 58% with CT. In comparison to CT, the NT system resulted in total inputs of microbial C and N estimated at 38 kg C ha⁻¹ yr⁻¹ and 1.5 kg N ha⁻¹ yr⁻¹, respectively. Apparently, N was the key nutrient limiting C and N stocks, and since adoption of NT resulted in a significant increase of N in soils which were deficient in N, efforts should be focused on increasing N inputs on NT systems.     

Development of Specific PCR Primers for Identification and Detection of Rhizopycnis vagum

Rhizopycnis vagum is a recently described coelomycete known to belong to the complex of root rot pathogens contributing to vine decline of cucurbits in several parts of the world. However, the fungus has also been reported to infect tomato, and as an endophytic associate of mycorrhizal roots of wild, asymptomatic Pinus halepensis and Rosmarinus officinalis plants in Italy. To accelerate epidemiological and ecological investigations on this fungus, a PCR primer pair was developed. Primers Rv1-F and Rv1-R were designed, based on alignment of internal transcribed spacer (ITS) sequences (ITS1-5.8S-ITS2), which amplified a 396-bp fragment from all R. vagum isolates tested, including isolates pathogenic to melons and endophytic isolates from mycorrhizae. Specificity of the primer pair was verified both in silico (BLAST searches using each primer string as a query) and in PCR assays, where the primers failed to amplify DNA from any isolate of fungi taxonomically related to R. vagum (e.g. Massarina walkeri and Stagonospora spp.) and other vine decline and common soilborne pathogens (e.g. Monasporascus cannonballus, Acremonium cucurbitacearum, Fusarium spp. and Rhizoctonia solani). Under optimum conditions, detectable amplification of the specific sequence required 0.05 pg of target DNA. Amplification of the expected 369-bp fragment was also obtained from DNA root extracts of nearly asymptomatic Cucumis melo plants inoculated with R. vagum under greenhouse conditions.     

Antioxidant activity and phenolic composition of wild, edible, and medicinal fennel from different Mediterranean countries

Fennel (Foeniculum vulgare Mill.) is a typical aromatic plant of the Mediterranean area, long used as a medicinal and spice herb. Fennel is also well-known for its essential oil, which has been extensively studied for many years owing to its commercial importance. In this work, the antioxidant activity and the total phenolic and flavonoid contents, as well as the quantitative determination of individual flavonoids and phenolic acids of wild, edible, and medicinal fennel from different Mediterranean countries, have been determined. The antioxidant activity was measured as the free radical (DPPH), hydroxyl radical, and superoxide anion scavenging activities. Wild fennel was found to exhibit a radical scavenging activity, as well as a total phenolic and total flavonoid content, higher than those of both medicinal and edible fennels.     

Sampling effects on the assessment of genetic diversity of rhizobia associated with soybean and common bean

Biological nitrogen fixation plays a key role in agriculture sustainability, and assessment of rhizobial diversity contributes to worldwide knowledge of biodiversity of soil microorganisms, to the usefulness of rhizobial collections and to the establishment of long-term strategies aimed at increasing contributions of legume-fixed N to agriculture. Although in recent decades the use of molecular techniques has contributed greatly to enhancing knowledge of rhizobial diversity, concerns remain over simple issues such as the effects of sampling on estimates of diversity. In this study, rhizobia were isolated from nodules of plants grown under field conditions, in pots containing soil, or in Leonard jars receiving a 10⁻² or a 10⁻⁴ serially-diluted soil inoculum, using one exotic (soybean, Glycine max) and one indigenous (common bean, Phaseolus vulgaris) legume species. The experiments were performed using an oxisol with a high population (10⁵ cells g⁻¹ soil) of both soybean rhizobia, composed of naturalized strains introduced in inoculants and of indigenous common-bean rhizobia. BOX-PCR was used to evaluate strain diversity, while RFLP-PCR of the ITS (internally transcribed spacer) region with five restriction enzymes aimed at discriminating rhizobial species. In both analyses the genetic diversity of common-bean rhizobia was greater than that of soybean. For the common bean, diversity was greatly enhanced at the 10⁻⁴ dilution, while for the soybean dilution decreased diversity. Qualitative differences were also observed, as the DNA profiles differed for each treatment in both host plants. Differences obtained can be attributed to dissimilarity in the history of the introduction of both the host plant and the rhizobia (exotic vs. indigenous), to host-plant specificity, rhizobial competitiveness, and population structure, including ease with which some types are released from microcolonies in soil. Therefore, sampling method should be considered both in the interpretation and comparison of the results obtained in different studies, and in the setting of the goals of any study, e.g. selection of competitive strains, or collection of a larger spectrum of rhizobia. Furthermore, effects of sampling should be investigated for each symbiosis.