Unique viral capsid assembly protein gene (g20) of cyanophages in the floodwater of a Japanese paddy field

In order to evaluate the genetic diversity of cyanophage communities of rice fields, viral capsid assembly protein gene (g20) was amplified with primers CPS1 and CPS8. The DNA was extracted three times from viral concentrates obtained from floodwater samples collected in each of four different plots (no fertilizer; P and K chemical fertilizers; N, P, and K chemical fertilizers; and chemical fertilizers with compost). Denaturing gradient gel electrophoresis (DGGE) gave different g20 clones. The sequencing of DGGE bands revealed that the g20 genes of the floodwater were divergent and that the majority of clones formed several unique groups. However, they were more closely related to g20 sequences from freshwaters than to those from marine waters, suggesting that g20 genes in terrestrial aquatic environments are different from those in marine environments.     

Populations, Community Composition and Biomass of Aquatic Organisms in the Floodwater of Rice Fields and Effects of Field Management

As rice fields are managed for improved rice production, many studies on aquatic organisms in the floodwater have been restricted to agronomically important members such as blue-green algae (BGA) and Azolla , and ecological studies on common aquatic organisms were relatively limited to specific group members. In the present paper, studies on all the aquatic organisms in the floodwater, from protozoa to insects and fishes, were reviewed worldwide from the viewpoint of rice field ecology, paying attention to their populations, seasonal variations, antagonistic relations and biomass, and the effect of field management. Most studies conducted in India and in the Southeast Asian countries dealt with the BGA and green algal populations. In contrast, protozoa and aquatic animals were extensively studied in rice fields in Europe. Japanese studies in the past were intermediate between the previously cited studies. They generally described specific groups depending on the authors' interests, and surprisingly few studies dealt with the community level and prey-predator relationships. Field management such as fertilizer and pesticide application, water management and plowing was found to play a major role in determining the populations of aquatic organisms. Overview of research on aquatic organisms in the floodwater of rice fields suggests several directions for future studies.     

Epibiotic microorganisms associated with microcrustaceans in overlying water of Philippine paddy fields

Epibiotic microorganisms associated with micro crustaceans in the overlying water of Philippine paddy fields were examined by scanning electron microscopy, and their associations were compared with those observed in Japanese paddy fields (Soil Sci. Plant Nutr., 43, 633-641, 651-664, 1997). Various types of microorganisms, including bacteria, protozoa, and algae, colonized microcrustaceans and their kinds and colonizing patterns varied depending on the kinds of microcrustaceans. Common associations between epibionts and respective micro crustaceans were observed in the Philippines and in Japan: e.g., rodshaped bacteria on Cyclopidae and Cypridopsidae; no microorganisms on Simocephalus spp.     

Symbiotic efficiency and compatibility of native rhizobia in northern Thailand with different soybean cultivars

Symbiotic efficiency and compatibility of 81 isolates of native bradyrhizobia from irrigated areas in northern Thailand with four soybean cultivars and one cowpea cultivar were evaluated under laboratory conditions. Effectiveness and / or compatibility of the tested isolates were compared with those of a standard strain (Bradyrhizobium japonicum CB 1809) by using plants grown on plastic seed bags. Effectiveness of the isolates was also estimated using uninoculated control plants grown in a nitrogen-free solution. Nodulation of a wide range of host plants by the majority of the tested isolates was observed, which agreed well with the results of our previous field experiment (Shutsrirung et al. 2002: Soil Sci. Plant Nutr., 48, 491–499). Up to 75% of the tested isolates induced a higher growth efficiency than that of the uninoculated control in association with one of the tested cultivars, Black soybean. Comparision with uninoculated control plants, enable to estimate the proportion of the tested isolates leading to effective growth promotion (E + e) of each cultivar, namely, Black soybean (local Thai cultivar), 75%; Cowpea, 82%; SJ5 (commercial Thai cultivar), 33%; Bragg (US cultivar), 33%; and Improved Pelican (US cultivar), 9%. These results indicated that although isolates with a high infectiveness with both “Asian-type” and “US-type” soybeans could be found, a high frequency of isolates leading to inefficient nodules was observed in the US cultivar, suggesting the presence of genetic differences in the soybean cultivars that express high-preference (efficient nodules) or low-preference (inefficient nodules) for a certain group of tested isolates. Based on the results of this laboratory experiment together with our previous field experiment, native rhizobial populations in the irrigated area of northern Thailand could be separated into three groups; Group 1: rhizobium strains showing a high effectiveness with only Asian cultivars, Group 2: strains showing a high effectiveness with only US origin cultivars, and Group 3: strains showing a high effectiveness with both Asian and US origin cultivars. The majority of the native rhizobial populations belonged to Group 1. The isolates in Group 3 may display a high potential for manipulating useful rhizobial inoculant.     

Effects of pre-feeding of a corn silage-based supplement on the feed intake, milk production and nitrogen utilization of grazing dairy cows

Four Holstein cows were used to determine the effect of timing of the feeding of a corn silage (CS)‐based supplement on the feed intake, milk production and nitrogen utilization of grazing dairy cows. The cows were fed the supplement 2 h before grazing (pre‐grazing) or immediately after grazing (post‐grazing). Cows were grazed for 5 h per day under a rotational grazing system. There was no difference in the herbage and total feed intake between treatments. The milk protein yield for pre‐grazing tended to be higher than that for post‐grazing, whereas the milk yield did not differ between treatments. The total nitrogen intake for pre‐grazing tended to be higher than that for post‐grazing (P = 0.06). There was no difference in the urinary nitrogen output between treatments, whereas the proportion of urinary nitrogen output : total nitrogen intake for pre‐grazing tended to be lower than that for post‐grazing (P = 0.06). The milk nitrogen output and nitrogen retention for pre‐grazing tended to be higher than that for post‐grazing (milk nitrogen, P = 0.06; nitrogen retention, P = 0.05). Nitrogen utilization of grazing dairy cows was improved by feeding a CS‐based supplement before grazing.     

Effect of monensin withdrawal on rumen fermentation,methanogenesis and microbial populations in cattle

This study was designed to obtain information on the residual influence of dietary monensin on ruminant fermentation, methanogenesis and bacterial population. Three ruminally cannulated crossbreed heifers (14 months old, 363 ± 11 kg) were fed Italian ryegrass straw and concentrate supplemented with monensin for 21 days before sampling. Rumen fluid samples were collected for analysis of short chain fatty acid (SCFA) profiles, monensin concentration, methanogens and rumen bacterial density. Post‐feeding rumen fluid was also collected to determine in vitro gas production. Monensin was eliminated from the rumen fluid within 3 days. The composition of SCFA varied after elimination of monensin, while total production of SCFA was 1.78 times higher than on the first day. Methane production increased 7 days after monensin administration ceased, whereas hydrogen production decreased. The methanogens and rumen bacterial copy numbers were unaffected by the withdrawal of monensin.     

Expression of NOS and VEGF in feline mammary tumours and their correlation with angiogenesis

In order to define the role of nitric oxide (NO) in feline mammary tumours, the expression of endothelial or inducible nitric oxide synthase (e/iNOS) and vascular endothelial growth factor (VEGF), and their relationship with angiogenesis, was investigated in 23 feline mammary tumours (two hyperplastic, 19 adenocarcinoma, one osteosarcoma and one squamous cell carcinoma) by immunohistochemistry. Tumour angiogenesis was assessed by CD31 immunostaining and was expressed as microvessel density (MVD). In general, iNOS immunoreactivity was localised in tumour cells and occasionally in stromal myofibroblasts, whereas eNOS and VEGF were localised in the cytoplasm of tumour epithelial cells and endothelium. In malignancy, expression of iNOS increased from well- to less-differentiated phenotypes (Grades 1-3) and was significantly higher in G3 and G2 when compared with G1 cases. However, increasing eNOS expression was limited only in hyperplastic lesions and showed no significant changes among the grades. In addition, expression of iNOS was positively correlated with VEGF and MVD in feline mammary tumours and both measures were significantly greater in less differentiated phenotypes (P<0.05). In conclusion, the expression of NOS isoforms in feline mammary tumours depended on tumour grade, and the positive correlations between iNOS and angiogenic markers suggests that iNOS synthesised by tumour cells promotes tumour growth. Thus, iNOS can be used as an important immunohistochemical marker to determine the degree of malignancy and prognosis of feline mammary carcinoma.     

Nitrogen uptake response of crops to organic nitrogen

Sustainability of agriculture became a major issue of global concern during this decade. Agronomic practices aimed at reducing the dependence on inputs such as chemical fertilizers can contribute to sustainability. Nitrogen (N) is the most limiting and commonly applied nutrient for crop production. The development of nutrient-responsive cultivars especially during the past three decades led to an intensive use of N fertilizers in many agricultural systems. Environmental and economic issues associated with such practices have, however, generated an interest in alternative management systems. These include practices such as exploitation of beneficial biological functions (symbiotic nitrogen fixation, etc.) and substitution of chemical fertilizers with farm-generated products.     

Impact of fumigation with metam sodium upon soil microbial community structure in two Japanese soils

The effects of fumigation with sodium methyl dithiocarbamate (metam sodium) on the microbial community structure and function in 2 soils were investigated using a variety of techniques. In both soils ca. 50% and 90% of the populations of total and culturable bacteria, respectively, were killed by fumigation, with recovery to levels prevailing in control soils 26 d after cessation of fumigation. The size of the ammonium and nitrite oxidiser populations was reduced by up to 4 orders of magnitude by fumigation, with the latter showing a slight recovery 105 d later. There were substantial changes in the C-utilisation (Biolog GN) profiles in the fumigated soils even 105 d later. The number and pattern of amplified 16S ribosomal DNA restriction analysis (ARDRA) fragments was changed by fumigation, and there was a shift in the %G+C profile toward a greater proportion of lower %G+C classes in treated soils. It appeared that DNA released from killed cells remained for some time after fumigation, and masked the apparent community DNA profiles. This study demonstrates that the effects of fumigation on the soil microbial community structure and function were pronounced and for some parameters very persistent. However, the effects on broad-scale properties such as total or culturable bacterial numbers were less enduring.     

Carbon cycling in rice field ecosystems in the context of input, decomposition and translocation of organic materials and the fates of their end products (CO2 and CH4)

Rice fields are intensively managed, unique agroecosystems, where soil flooding is general performance for rice cultivation. Flooding the field results in reductive soil conditions, under which decomposition of organic materials proceeds during the period of rice cultivation. A large variety of organic materials are incorporated into rice soils according to field management. In this review, the kind and abundance of organic materials entering carbon cycling in the rice field ecosystem are evaluated first. Then, decomposition of plant residues and soil organic matter in rice fields is reviewed quantitatively. Decomposition of plant residues is shown to be the active process in carbon cycling in rice fields. Rice releases photosynthates into the rhizosphere (rhizodeposition), and they follow a different avenue of decomposition in soil from that of plant residues. Incorporation of rhizodeposition into microbial biomass and soil organic matter during the period of rice cultivation, and their fates after harvesting are evaluated quantitatively from ¹³C pulse labeled experiments. Percolating water transports inorganic and organic carbon from the plow layer to the subsoil layer. The amounts of their transport and accumulation in the subsoil layer are evaluated in relation to the amounts of soil organic C in the plow layer. Not only CO₂ but also CH₄ are produced in the decomposition process of organic materials in flooded rice fields. CH₄ evolution from rice fields is of global concern from the viewpoint of global warming. Origins of CH₄ evolved from rice fields are estimated first, followed by the fates of CH₄ in rice field ecosystems. Rhizodeposition is shown to be the main origin of CH₄ evolved from rice fields. Evolution to the atmosphere is not the sole pathway of CH₄ produced in rice fields. The amounts of CH₄ retained in soil, percolated to the subsoil layer and decomposed in soil are evaluated in the context of the amounts of CH₄ efflux. Thus, this review focuses on carbon cycling in the rice field ecosystem from the viewpoints of input, decomposition, and translocation of organic materials and the fates of their end products (CO₂ and CH₄).