Contrasting climate velocity impacts in warm and cool locations show that effects of marine warming are worse in already warmer temperate waters

Species responses to climate change are often measured at broad spatiotemporal scales, which can miss the fine-scale changes that are most relevant to conservation and fisheries management. We develop a scaleable geostatistical approach to assess how juvenile and adult fish distributions have been shaped by changes in bottom temperature and dissolved oxygen over a recent decade of warming in the northeast Pacific. Across 38 demersal fishes, biomass trends were associated negatively with warming and positively with dissolved oxygen, but when trends in both biomass and climate were converted to velocities—the speed and direction a population would have to move to maintain consistent conditions—the effect of temperature change differed depending on local conditions. In the warmest locations, warming velocities were associated with negative biotic velocities for 19 of 69 species-maturity combinations, and yet were almost always associated with stable or positive biotic velocities in the coolest locations (64 of 69). These spatially consistent biomass declines (negative biotic velocities) in the warmest locations and increases in cooler locations suggest a redistribution of species with the potential for new ecological and fisheries interactions. After controlling for temperature, the more spatially consistent effects of dissolved oxygen were often negative, suggesting a mechanism other than hypoxia avoidance—potentially changes in primary production. Our approach identifies the species and locations that are most sensitive to observed changes in the environment at any scale, thus facilitating future vulnerability assessments.     

A HACCP-based approach to mastitis control in dairy herds. Part 2: Implementation and evaluation

Part 1 of the study described the development of a Hazard Analysis and Critical Control Point (HACCP) based programme and accompanying handbook for the control of mastitis. This paper describes the implementation and evaluation of customised HACCP-based programmes, which were developed from the handbook and assessed on six Irish dairy farms. Both quantitative and qualitative (action research) research methodologies were used to measure the success of implementation and efficacy of control of sub-clinical mastitis as measured by Somatic Cell Counts (SCC) and the degree of compliance by farmers in adopting and maintaining recommendations throughout the course of the study period. No overall differences in SCC before and during the implementation of the study were found when all six farms were considered together. Three of the six study farms experienced a significant decrease in herd milk recorded SCC during the implementation of the control programme. An essential part of the study was achieving initial agreement on recommendations as well as ongoing monitoring of compliance during the study. This pilot study shows that HACCP can be implemented on farms as a means of working towards the control of mastitis and that farmer attitude, and understanding of mastitis are crucial in terms of motivation irrespective of practical approaches used to manage mastitis.     

A HACCP-based approach to mastitis control in dairy herds. Part 1: Development

Hazard Analysis and Critical Control Points (HACCP) systems are a risk based preventive approach developed to increase levels of food safety assurance. This is part 1 of a pilot study on the development, implementation and evaluation of a HACCP-based approach for the control of good udder health in dairy cows. The paper describes the use of a novel approach based on a deconstruction of the infectious process in mastitis to identify Critical Control Points (CCPs) and develop a HACCP-based system to prevent and control mastitis in dairy herds. The approach involved the creation of an Infectious Process Flow Diagram, which was then cross-referenced to two production process flow diagrams of the milking process and cow management cycle. The HACCP plan developed, may be suitable for customisation and implementation on dairy farms. This is a logical, systematic approach to the development of a mastitis control programme that could be used as a template for the development of control programmes for other infectious diseases in the dairy herd.     

A novel method of core aspirate cytology compared to fine-needle aspiration for diagnosing canine osteosarcoma

There is little information in veterinary literature regarding the diagnostic accuracy of aspirate cytology for the diagnosis of canine osteosarcoma (OSA). The authors compared the diagnostic accuracy of a novel method of cytologic collection, termed core aspirate cytology (CA), with fine needle aspiration (FNA) and histopathology in 27 dogs with lytic and/or proliferative bone lesions. Alkaline phosphatase (ALP) staining was performed to confirm the diagnosis of OSA cytologically. OSA was accurately diagnosed in 85% and 95% of FNA and CA, respectively. ALP staining was 100% sensitive for the diagnosis of OSA. CA using a bone marrow biopsy needle allowed for penetration of cortical bone and aspirate cytology with a larger bore needle than FNA; however, there was no significant difference in diagnostic accuracy between techniques. Aspirate cytology with ALP staining was a safe, accurate, and minimally invasive diagnostic test for the evaluation of suspected OSA lesions in dogs.     

A Quantitative Review of the Equinalysis System for Equine Locomotion Analysis

Movement analysis techniques allow objective and quantitative assessment of kinematic gait analysis. Consistent repeatability of the kinematic data is essential for such assessments. This study investigated whether the repeatability of a standardized Equinalysis Elite gait analysis system is sufficient to allow its use in clinical evaluation of equine lameness with reliable documentation of individual locomotion patterns. The extent to which examinations on different days affected the results when a standardized protocol was used was investigated. The repeatability of distal limb kinematics in nine sound horses over three successive days at one location was investigated. Measurements were performed at the examination area, for three motion cycles at the walk and trot, in each direction per day. Skin markers were placed on the lateral aspect of the coffin joint, forelimb fetlock joint, hindlimb fetlock joint, carpus, tarsus, elbow, and stifle, at clipped sites marked with a permanent marker. The inter-day repeatability of angular measurements of the carpus, tarsus, forelimb fetlock, and hindlimb fetlock joints was determined. A low degree of inter-day repeatability was found with statistically significant (P ≤ .05) differences between findings on different days, observed in the time-angle diagrams of left and right carpus, tarsus, forelimb fetlock, and hindlimb fetlock joints of all horses, at both walk and trot. The standardized Equinalysis Elite system for gait analysis of distal limb kinematics in the horse did not provide highly repeatable data in this setting.     

Type of organic carbon amendment influences pH changes in acid sulfate soils in flooded and dry conditions

Purpose

Acid sulfate soils (ASS) are common in wetlands and can pose an environmental threat when they dry because oxidation of pyrite may cause strong acidification. Addition of organic matter can stimulate sulfate reduction during wet periods and minimize acidification during dry periods. However, the effect of the organic amendment may depend on its composition.

Materials and methods

Three wetland acid sulfate (sulfuric, hypersulfidic, and hyposulfidic) soils collected from different depth in one profile were used. The soils, unamended or amended with 10 g C kg^?1 as glucose, wheat straw, pea straw, or Phragmites litter, were incubated for 18 weeks under flooded conditions (“wet period”) followed by 10 weeks during which the soils were maintained at 100 % of maximum water-holding capacity (“dry period”).

Results and discussion

During the wet period, the pH decreased in the control and with glucose to pH 3–4, but increased or was maintained in residue-amended soils (pH at the end of the wet period about 7). In the dry period, the pH of the control and glucose-amended soils remained low, whereas the pH in residue-amended soils decreased. However, at end of the dry period, the pH was higher in residue-amended soils than in the control or glucose-amended soils, particularly with pea straw (C/N 50).

Conclusions

Amendment of acid sulfate soils with plant residues (particularly those with low to moderate C/N ratio) can stimulate pH increase during flooding and reduce acidification under oxidizing conditions.

     

Prospects for genomic selection in forage plant species

Genomic selection (GS) is a powerful method for exploitation of DNA sequence polymorphisms in breeding improvement, through the prediction of breeding values based on all markers distributed genome‐wide. Forage grasses and legumes provide important targets for GS implementation, as many key traits are difficult or expensive to assess, and are measured late in the breeding cycle. Generic attributes of forage breeding programmes are described, along with status of genomic resources for a representative species group (ryegrasses). Two schemes for implementing GS in ryegrass breeding are described. The first requires relatively little modification of current schemes, but could lead to significant reductions in operating cost. The second scheme would allow two rounds of selection for key agronomic traits within a time period previously required for a single round, potentially leading to doubling of genetic gain rate, but requires a purpose‐designed reference population. In both schemes, the limited extent of linkage disequilibrium (LD), which is the major challenge for GS implementation in ryegrass breeding, is addressed. The strategies also incorporate recent advances in DNA sequencing technology to minimize costs.