Empirical predictions of plant material C and N mineralization patterns from near infrared spectroscopy, stepwise chemical digestion and C/N ratios

Prediction of carbon (C) and nitrogen (N) mineralization patterns of plant litter is desirable for both agronomic and environmental reasons. Near infrared reflectance (NIR) spectroscopy has recently been introduced in decomposition studies to characterize biochemical composition. The purpose of the current study was to use empirical techniques to predict C and N mineralization patterns of a wide range of plant materials incubated under controlled temperature and moisture conditions. We hypothesized that the richness of information in the NIR spectra would considerably improve predictions compared to traditional stepwise chemical digestion (SCD) or C/N ratios. Initially, we fitted a number of empirical functions to the observed C and N mineralization patterns. The best functions fitted with R²=0.990 and 0.949 to C and N, respectively. The fractions of C and N mineralized at different points in time were then either predicted directly with regression functions or indirectly by prediction of the parameters of the empirical functions fitted to incubation data. In both cases, partial least squares (PLS) regressions were used and predictions were validated by cross-validations. We found that the NIR spectra (best R²=0.925) were able to predict C mineralization patterns marginally better than the SCD fractions (best R²=0.911), but considerably better than the C/N ratios (best R²=0.851). In contrast, N mineralization was better predicted by SCD fractions (best R²=0.533) than the C/N ratio (best R²=0.497), which was better than NIR predictions (best R²=0.446). Although the predictions with the NIR spectra were only slightly better for C and worse for N mineralization compared to SCD fractions, NIR spectroscopy still holds advantages, as it is a much less laborious and cheaper analytical method. Furthermore, exploration of the applications of NIR spectroscopy in decomposition studies has only just begun, and offers new ways to gain insights into the decomposition process.     

Effect of soil compaction on hydraulic properties of two loess soils in China

Soil compaction affects hydraulic properties, and thus can lead to soil degradation and other adverse effects on environmental quality. This study evaluates the effects of three levels of compaction on the hydraulic properties of two silty loam soils from the Loess Plateau, China. Undisturbed soil cores were collected from the surface (0–5 cm) and subsurface (10–15 cm) layers at sites in Mizhi and Heyang in Shaanxi Province. The three levels of soil compaction were set by increasing soil bulk density by 0% (C0), 10% (C1) and 20% (C2) through compression and hammering in the laboratory. Soil water retention curves were then determined, and both saturated hydraulic conductivity (K_s) and unsaturated hydraulic conductivity were estimated for all of the samples using standard suction apparatus, a constant head method and the hot-air method, respectively. The high level of compaction (C2) significantly changed the water retention curves of both the surface and subsurface layers of the Heyang soil, and both levels of compaction (C1 and C2) changed the curves of the two layers from the Mizhi site. However, the effects of compaction on the two soils were only pronounced below water tensions of 100 kPa. Saturated hydraulic conductivities (K_s) were significantly reduced by the highest compaction level for both sampled layers of the Heyang soil, but no difference was observed in this respect between the C0 and C1 treatments. K_s values decreased with increasing soil compaction for both layers of the Mizhi soil. Unsaturated hydraulic conductivities were not affected by soil compaction levels in the measured water volume ratio range, and the values obtained were two to five orders of magnitude higher for the Mizhi soil than for the Heyang soil. The results indicate that soil compaction could strongly influence, in different ways, the hydraulic properties of the two soils.     

Impacts from Deposition on Swedish Forest Ecosystems Identified by Integrated Monitoring

Integrated monitoring of ecosystems (IM) is an international co-operative programme (ICP) to control effects of air pollution and climate change on water, soil and biological systems. It is a part of the Convention on Long-Range Transboundary Air Pollution (CLRTAP) of the United Nations Economic Commission of Europe (UN/ECE). The ICP-IM is undertaken on sites/catchments to investigate acidification, eutrophication and heavy metals with an integrated approach. In Sweden, long-term time series from forest ecosystems, with a long and stable continuity, will reveal trends and changes in processes and enable modelling to be undertaken. Investigations of acidity/alkalinity in relation to mineral and organic acids indicated the importance of atmospheric deposition. Recent results show very high inorganic nitrogen retention (99%), a net loss of sulphur originating mainly from organic horizons, and a high inorganic aluminium content in the illuvial soil horizons which could be detrimental to forests. Forest deficiency could also be caused by an observed ongoing translocation of Zn to deeper soil layers implying a movement towards increased release to surface waters.     

Breast-feeding at 12 months of age and dietary habits among breast-fed and non-breast-fed infants

OBJECTIVE: To analyse factors associated with breast-feeding and use of sweetened drinks at 12 months, and to compare dietary habits among breast-fed and non-breast-fed infants. DESIGN: Data were collected by a semi-quantitative food-frequency questionnaire filled in by the parents. SETTING: National dietary survey in Norway. SUBJECTS: In total, 1932 12-month-old infants were included. RESULTS: At 12 months, 36% of the infants were breast-fed. The odds of breast-feeding at this age were more than doubled both for mothers > or =35 years compared with mothers <25 years and for mothers in the highest educational group compared with mothers in the lowest. A negative association was found for maternal smoking, and the odds of breast-feeding were 40% lower for mothers who smoked than for non-smokers. Some dietary differences were observed between breast-fed and non-breast-fed infants apart from intake of milk. In particular, breast-fed infants had a significantly lower daily intake of sweetened drinks than non-breast-fed infants and a 16% lower mean daily intake of added sugars (P<0.001). Furthermore, breast-fed infants had 30% higher odds of not receiving sweetened drinks daily, compared with non-breast-fed infants. CONCLUSIONS: Maternal age, education and smoking status were important factors for breast-feeding at 12 months. Breast-fed infants had lower intakes of sweetened drinks and added sugars than non-breast-fed infants. From a public health perspective, continued promotion of breast-feeding is needed to reduce inequalities in breast-feeding. Moreover, prevention of high intakes of sweetened drinks and added sugars should start in infancy.     

The structure of ferrihydrite, a nanocrystalline material

Despite the ubiquity of ferrihydrite in natural sediments and its importance as an industrial sorbent, the nanocrystallinity of this iron oxyhydroxide has hampered accurate structure determination by traditional methods that rely on long-range order. We uncovered the atomic arrangement by real-space modeling of the pair distribution function (PDF) derived from direct Fourier transformation of the total x-ray scattering. The PDF for ferrihydrite synthesized with the use of different routes is consistent with a single phase (hexagonal space group P6(3)mc; a = approximately 5.95 angstroms, c = approximately 9.06 angstroms). In its ideal form, this structure contains 20% tetrahedrally and 80% octahedrally coordinated iron and has a basic structural motif closely related to the Baker-Figgis delta-Keggin cluster. Real-space fitting indicates structural relaxation with decreasing particle size and also suggests that second-order effects such as internal strain, stacking faults, and particle shape contribute to the PDFs.     

Nod2 mutation in Crohn's disease potentiates NF-kappaB activity and IL-1beta processing

Variants of NOD2, an intracellular sensor of bacteria-derived muramyl dipeptide (MDP), increase susceptibility to Crohn's disease (CD). These variants are thought to be defective in activation of nuclear factor kappaB (NF-kappaB) and antibacterial defenses, but CD clinical specimens display elevated NF-kappaB activity. To illuminate the pathophysiological function of NOD2, we introduced such a variant to the mouse Nod2 locus. Mutant mice exhibited elevated NF-kappaB activation in response to MDP and more efficient processing and secretion of the cytokine interleukin-1beta (IL-1beta). These effects are linked to increased susceptibility to bacterial-induced intestinal inflammation and identify NOD2 as a positive regulator of NF-kappaB activation and IL-1beta secretion.     

Structure of the polycrystalline zeolite catalyst IM-5 solved by enhanced charge flipping

Despite substantial advances in crystal structure determination methodology for polycrystalline materials, some problems have remained intractable. A case in point is the zeolite catalyst IM-5, whose structure has eluded determination for almost 10 years. Here we present a charge-flipping structure-solution algorithm, extended to facilitate the combined use of powder diffraction and electron microscopy data. With this algorithm, we have elucidated the complex structure of IM-5, with 24 topologically distinct silicon atoms and an unusual two-dimensional medium-pore channel system. This powerful approach to structure solution can be applied without modification to any type of polycrystalline material (e.g., catalysts, ceramics, pharmaceuticals, complex metal alloys) and is therefore pertinent to a diverse range of scientific disciplines.     

Dynamic complex formation during the yeast cell cycle

To analyze the dynamics of protein complexes during the yeast cell cycle, we integrated data on protein interactions and gene expression. The resulting time-dependent interaction network places both periodically and constitutively expressed proteins in a temporal cell cycle context, thereby revealing previously unknown components and modules. We discovered that most complexes consist of both periodically and constitutively expressed subunits, which suggests that the former control complex activity by a mechanism of just-in-time assembly. Consistent with this, we show that additional regulation through targeted degradation and phosphorylation by Cdc28p (Cdk1) specifically affects the periodically expressed proteins.     

Root growth conditions in the topsoil as affected by tillage intensity

Many studies have reported impeded root growth in topsoil under reduced tillage or direct drilling, but few have quantified the effects on the least limiting water range for root growth. This study explored the effects of tillage intensity on critical soil physical conditions for root growth in the topsoil. Samples were taken from a 7-year tillage experiment on a Danish sandy loam at Foulum, Denmark (56°30′ N, 9°35′ E) in 2008. The main crop was spring barley followed by either dyer's woad (Isatis tinctoria L.) or fodder radish (Raphanus sativus L.) cover crops as subtreatment. The tillage treatments were direct drilling (D), harrowing 8-10 cm (H), and ploughing (P) to 20 cm depth. A chisel coulter drill was used in the H and D treatments and a traditional seed drill in the P treatment. Undisturbed soil cores were collected in November 2008 at soil field moisture capacity from the 4-8 and 12-16 cm depths.We estimated the critical aeration limit from either 10% air-filled porosity (ε_a) or relative gas diffusivity (D/D₀) of 0.005 or 0.02 and found a difference between the two methods. The critical limit of soil aeration was best assessed by measuring gas diffusivity directly. Root growth was limited by a high penetration resistance in the D and H soils (below tillage depth). Poor soil aeration did not appear to be a significant limiting factor for root growth for this sandy loam soil, irrespective of tillage treatment. The soil had a high macroporosity and D/D₀ exceeded 0.02 at field capacity. Fodder radish resulted in more macropores, higher gas diffusivity and lower pore tortuosity compared to dyer's woad. This was especially important for the H treatment where compaction was a significant problem at the lower depths of the arable layer (10-20 cm depth). Our results suggest that fodder radish could be a promising tool in the amelioration of soil compaction.     

Biological control of Rhizoctonia root rot on bean by phenazine- and cyclic lipopeptide-producing Pseudomonas CMR12a

Pseudomonas CMR12a was previously selected as an efficient biocontrol strain producing phenazines and cyclic lipopeptides (CLPs). In this study, biocontrol capacity of Pseudomonas CMR12a against Rhizoctonia root rot of bean and the involvement of phenazines and CLPs in this ability were tested. Two different anastomosis groups (AGs) of Rhizoctonia solani, the intermediately aggressive AG 2-2 and the highly aggressive AG 4 HGI, were included in growth-chamber experiments with bean plants. The wild-type strain CMR12a dramatically reduced disease severity caused by both R. solani AGs. A CLP-deficient and a phenazine-deficient mutant of CMR12a still protected bean plants, albeit to a lesser extent compared with the wild type. Two mutants deficient in both phenazine and CLP production completely lost their biocontrol activity. Disease-suppressive capacity of CMR12a decreased after washing bacteria before application to soil and thereby removing metabolites produced during growth on plate. In addition, microscopic observations revealed pronounced branching of hyphal tips of both R. solani AGs in the presence of CMR12a. More branched and denser mycelium was also observed for the phenazine-deficient mutant; however, neither the CLP-deficient mutant nor the mutants deficient in both CLPs and phenazines influenced hyphal growth. Together, results demonstrate the involvement of phenazines and CLPs during Pseudomonas CMR12a-mediated biocontrol of Rhizoctonia root rot of bean.