The IMPDH inhibitors,ribavirin and mycophenolic acid,inhibit peste des petits ruminants virus infection

Peste des petits ruminants virus (PPRV) causes highly contagious diseases in domestic and particular wild small ruminants, leading to substantial economic loss. The development of effective and cheap antiviral medications shall help to circumvent this emerging burden. In this study, we found that ribavirin, a competitive inosine-5’-monophosphate dehydrogenase (IMPDH) inhibitor, significantly inhibits the replication of PPRV. As IMPDH is a key enzyme in purine nucleotide synthesis, supplementation of exogenous guanosine attenuate the anti-PPRV effect of ribavirin. Interestingly, an uncompetitive IMPDH inhibitor, mycophenolic acid (MPA), exerted more potent antiviral effect again PPRV. Similarly, this effect was largely restored upon supplementation of guanosine. Thus, we have demonstrated that the IMPDH inhibitors ribavirin and MPA combat PPRV infection through purine nucleotide depletion. Because both regimens have been widely used in the clinic for treating viral infection or organ rejection in transplantation patients for decades, respectively, repurposing these existing safe and cheap medications may provide a new avenue for combating PPRV infection.     

The concept of habitat specificity revisited

Habitat specificity indices reflect richness (α) and/or distinctiveness (β) components of diversity. The latter may be defined by α and γ (landscape) diversity in two alternative ways: multiplicatively () and additively (). We demonstrate that the original habitat specificity concept of Wagner and Edwards (Landscape Ecol 16:121–131, 2001) consists of three independent components: core habitat specificity (uniqueness of the species composition), patch area and patch species richness. We describe habitat specificity as a family of indices that may include either area or richness components, or none or both, and open for use of different types of mean in calculation of core habitat specificity. Core habitat specificity is a beta diversity measure: the effective number of completely distinct communities in the landscape. Habitat specificity weighted by species number is a gamma diversity measure: the effective number of species that a patch contributes to landscape richness. We compared 12 habitat specificity indices by theoretical reasoning and by use of field data (vascular plant species in SE Norwegian agricultural landscapes). Habitat specificity indices are strongly influenced by weights for patch area and patch species richness, and the relative contribution of rare vs. common species (type of mean). The relevance of properties emphasized by each habitat specificity index for evaluation of patches in a biodiversity context is discussed. Core habitat specificity is emphasized as an ecologically interpretable measure that specifically addresses patch uniqueness while habitat specificity weighted by species number combines species richness and species composition in ways relevant for conservation biological assessment. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Bird response to disturbance varies with forest productivity in the northwestern United States

Huston’s Dynamic Equilibrium Hypothesis predicts that the response of biodiversity to disturbance varies with productivity. Because disturbance is thought to break competitive advantage of dominant species in productive ecosystems, species richness is predicted to increase with disturbance frequency in productive systems. Recovery of plant biomass following disturbance is also predicted to be faster in productive systems. Here we provide the first test of Huston’s hypothesis in the context of setting harvest rates in managed forests for achieving biodiversity objectives. We examined predictions relating to vegetation and bird response to disturbance and succession in productive and less productive forests in western Oregon and Washington, USA. We found that measurements of understory cover and shrub diversity were higher in young, productive stands than less productive stands of similar age. Later-seral forests in productive environments (mean age = 67 years) had less variable and more complete canopy closure than similar-age forests in less favorable settings. At the stand scale, bird abundance and richness decreased with canopy closure in highly productive forests whereas bird abundance and richness increased with canopy closure in less productive forests. At the landscape scale, bird abundance and richness within stands increased with increasing levels of disturbance in the surrounding landscape within highly productive forests, whereas bird abundance and richness decreased with increasing disturbance in the surrounding landscape within less productive forests. Our results indicate that bird response to disturbance varies across levels of productivity and suggest that bird species abundance and associated species richness will be maximized through relatively more frequent disturbance in highly productive systems.     

Demographic dynamics and off-take of cattle herds in southern Mali

The herds of 95 families were monitored for 1 year in eight villages in the cotton-growing region of southern Mali. In 2006–2007, reproduction performances were average, with 0.54 calvings/year per cow, and mortality was low. Herd numerical productivity is not very high, less than 0.13/year, because of the high proportion of males kept for animal draught. Depending on the herd size, the behaviour of the families differs, in terms of off-take and in-take of animals. Families that only have one or two draught animals seek to increase their animal draught capacity, with a negative net off-take (−0.13/year). Families with two to three cows have a very low net off-take (0.02/year), with culling of adult animals compensated by purchase. They therefore capitalised this year, with an annual herd growth of 8%. Families with a very large herd (20 to 50 cows) take off more of their stock, with a net off-take of 0.08/year (very few animal purchases) and make a stock growth of 5%. And finally, families with an average-sized herd (6 to 19 cows) take off the whole of the year’s production, with a net off-take of 0.11/year and a nil stock growth rate. The use of a demographic model made it possible to measure the sensitivity of the productivity rate to the different demographic parameters.     

Tracking fungi in soil with monoclonal antibodies

Species of the genus Trichoderma are ubiquitous soil-borne fungi that exhibit antagonism towards a number of economically important plant-pathogenic fungi and oomycetes. This review discusses recent developments in the use of monoclonal antibodies to detect these fungi in their natural soil environments and to quantify their population dynamics during antagonistic interactions with saprotrophic competitors in soil-based systems. Immunological approaches to detection and quantification are examined in relation to conventional plate enrichment techniques and to nucleic acid-based procedures. An example of recent research using a mAb-based assay to quantify the effects of saprotrophic competition on the growth of Trichoderma isolates in mixed species, soil-based, microcosms is presented. Future technological developments in immunoassays for tracking Trichoderma populations in soil are discussed and results presented showing the accurate detection and visualization of a plant growth-promoting isolate of T. hamatum in the rhizosphere of lettuce using mAb-based immunodiagnostic assays.     

First report of celery stunt anthracnose caused by <Emphasis Type="Italic">Colletotrichum simmondsii</Emphasis> in Japan

A new disease was found in Japan, on celery (Apium graveolens var. dulce) having severe chlorotic leaf spot, stunt, and dwarf with leaf curl. A spore suspension from the fungus isolated from affected plants induced identical symptoms 14 days after plants were sprayed. Identification and molecular characterization showed that the causal agent is Colletotrichum simmondsii. This report is the first of stunt anthracnose on celery caused by C. simmondsii. We propose the name “stunt anthracnose” for the new disease. Colletotrichum acutatum sensu lato, as reference pathogen of celery anthracnose, should be changed to C. fioriniae based on morphological and molecular characteristics.     

Spatial assessment of aesthetic services in a complex mountain region: combining visual landscape properties with crowdsourced geographic information

Context

Human and natural systems interact at multiple scales which are context specific in relation to ecosystem service supply. Scenic beauty is recognised as a cultural ecosystem service whose aesthetic value is perceived at a holistic landscape level.

Objectives

In this study we provide methodological advancements for assessing the relationship between landscape visual character and scenic beauty based on crowdsourced geographic information. The final aim is to demonstrate, through a case study application, an empirical method for mapping the scenic beauty of complex mountain landscapes from the perspective of observers which are realistically exposed to the environment being evaluated.

Methods

We propose a viewshed based approach which relies on visual indicators and the location of visitors retrieved by public image storage analysis. A cluster analysis was used to integrate visual characters of the landscape and visiting users’ preferences.

Results

Four different typologies of landscapes were finally characterized by distinct values of visual indicators. The spatial distribution of the landscape typologies presented a clustered pattern, allowing a regionalization of the landscape characters. The analysis of the visiting users’ provenance revealed that visual scale, naturalness and ephemera attract mainly foreign users, while imageability, complexity and historicity attract mostly domestic and local users.

Conclusions

The combination of crowdsourced images with visual indicators allows a systematic analysis of landscape scenic beauty properties. In all, by understanding how specific landscape characters contributes to aesthetic service provision we provide a tool for facilitating the visualization and interpretation of complex landscape characters.

     

A primer of acoustic analysis for landscape ecologists

In this paper we present an introduction to the physical characteristics of sound, basic recording principles as well as several ways to analyze digital sound files using spectrogram analysis. This paper is designed to be a “primer” which we hope will encourage landscape ecologists to study soundscapes. This primer uses data from a long-term study that are analyzed using common software tools. The paper presents these analyses as exercises. Spectrogram analyses are presented here introducing indices familiar to ecologists (e.g., Shannon’s diversity, evenness, dominance) and GIS experts (patch analysis). A supplemental online tutorial provides detailed instructions with step by step directions for these exercises. We discuss specific terms when working with digital sound analysis, comment on the state of the art in acoustic analysis and present recommendations for future research.     

The ecology and culture of landscape sustainability: emerging knowledge and innovation in landscape research and practice

Landscape researchers and practitioners, using the lens of sustainability science, are breaking new ground about how people’s behaviors and actions influence the structure, function, and change of designed landscapes in an urbanizing world. The phrase—the scientific basis of the design for landscape sustainability—is used to describe how sustainability science can contribute to translational landscape research and practice about the systemic relationships among landscape sustainability, people’s contact with nature, and complex place-based problems. In the first section of this article, important definitions about the scientific basis of the design for landscape sustainability are reviewed including the six Es of landscape sustainability—environment, economic, equity, aesthetics, experience, and ethics. A conceptual framework about the six Es of landscape sustainability for designed landscapes is introduced. The interrelatedness, opportunities, contradictions, and limitations of the conceptual framework are discussed in relation to human health/security, ecosystem services, biodiversity, and resource management. The conceptual framework about the six Es of landscape sustainability for designed landscapes follows the tradition in which landscape researchers and practitioners synthesize emerging trends into conceptual frameworks for advancing basic and applied activities.     

Control of lipid oxidation and meat color deterioration in skipjack tuna muscle during ice storage

The present study investigated the effects of lipid oxidation on quality deterioration in the ordinary and dark muscles of skipjack tuna Katuwonus pelamis during the early stages of ice storage for 72 h. The lipid hydroperoxide content of the dark muscle was significantly higher (P < 0.01) than that of the ordinary muscle throughout 72 h of ice storage. The metmyoglobin content of the ordinary muscle gradually increased, and was accompanied with darkening in the fish meat color. On the other hand, the addition of sodium ascorbate or 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox^®) to the ordinary muscle of skipjack tuna significantly inhibited the formation of lipid hydroperoxide as well as metmyoglobin formation. Thus, a decrease in α-tocopherol content in the ordinary muscle with antioxidant addition was not observed during ice storage period. In conclusion, the rate of lipid oxidation of skipjack tuna ordinary muscle is closely related to metmyoglobin formation, and the addition of antioxidants to fish meat is effective at inhibiting lipid oxidation as well as myoglobin oxidation in post-mortem meat.