Construction of high-resolution linkage map of the Ms locus, a restorer-of-fertility gene in onion (Allium cepa L.)

For the purpose of developing closely-linked molecular markers to the Ms locus, a restorer-of-fertility gene in onions (Allium cepa L.), bulked segregant analysis and randomly amplified polymorphic DNA (RAPD) analyses were utilized. Five RAPD markers polymorphic between male-fertile and male-sterile bulks were identified. These RAPD markers were converted into a simple PCR marker or cleaved amplified polymorphic sequence (CAPS) markers after sequencing the RAPD products and obtaining flanking sequences of the RAPD markers by genome walking. A linkage map was constructed with the Ms locus and flanking markers using a F₂ population. There was no recombinant between the Ms locus and two CAPS markers, jnurf05 and jnurf17. To increase resolution among these closely linked molecular markers and the Ms locus, a total of 1,346 F_2:3 and 2,927 F_2:4 plants were analyzed with two flanking markers for detection of recombinants. Segregation of male-fertility phenotypes in large-sized populations confirmed allelic segregation distortion in favor of the recessive Ms allele. Analysis of the recombinants with closely linked markers revealed only two recombinants between the Ms locus and the jnurf05 markers among 4,273 segregating plants, showing very tight linkage between the two loci. However, linkage disequilibrium between the two loci was not too strong among the breeding lines. Despite weak linkage disequilibrium, these tightly linked markers are useful in accurate marker-assisted selection of the Ms alleles and ultimate isolation of the Ms gene by map-based cloning approach.     

Identification of the <Emphasis Type="Italic">S</Emphasis> locus core sequences determining self-incompatibility and <Emphasis Type="Italic">S</Emphasis> multigene family from draft genome sequences of radish (<Emphasis Type="Italic">Raphanus sativus</Emphasis> L.)

The S core and its flanking sequences were identified from two independent draft genome sequences of radish (Raphanus sativus L.). After gap-filling with PCR, the S core regions and full-length S receptor kinase (SRK) genes from two radish genomes were obtained. Phylogenetic analysis of the SRK genes clearly showed that one S core region belonged to the class I S haplotypes, but the other was included in the class II S haplotypes. Three sequences showing homology with known transposable elements were identified in the core regions, and one intact copia-type long terminal repeat (LTR)-retrotransposon containing a 4125-bp open reading frame (ORF) was identified in the class I S haplotype. A total of 61 genes showing homology with the SRK genes were identified from two draft genome sequences. Among them, the RsKD1 showed the highest homology with the SRK genes. There was 90% nucleotide sequence identity between the RsKD1 and RsSRK1 genes in the kinase domains. The phylogenetic tree of SRK genes and 13 most closely related homologs showed that all homologs were more closely related to the class II SRK genes than to the class I SRKs. Physical mapping of radish SRK-homologous genes and their B. rapa orthologs showed that two radish homologs and their B. rapa orthologs were tightly linked to the SRK genes in radish and B. rapa genomes. Sequence information about multiple SRK-homologs identified in this study would be helpful for designing reliable primer pairs for faithful PCR amplification of the SRK alleles, leading to improvement of the S haplotyping system in radish breeding programs.     

Characterization of an EMS-induced soybean mutant with an increased content of Af saponin and a new component Ab-δ in the seed hypocotyl

Saponins are one of the components present in the soybean seeds that have various functional properties. The chemical structures and concentration of soyasaponins affect the taste of the processed soyfood, thereby limiting its industrial applications. Therefore, it is important to understand saponin biosynthesis to explore natural and artificial variation in the saponin components, which can be modified to suit its application. The objective of the present study was to identify and characterize an EMS-induced soybean mutant with an altered saponin composition from a pool of 892 M4 lines. The mutant PE1905 showed an increased content of saponin Af (336.0%). The content of saponin Ab, DDMP-αg, and DDMP-βg was decreased in the mutant PE1905 by 89.3, 24.8, and 63.1%, respectively compared to the wild-type Pungsannamul. Additionally, four new components were detected in the mutant PE1905 that were absent in the wild type. Of these, the compound 4 (designated as Ab-δ) had the highest concentration, and therefore it was further characterized by HPLC and LC-PDA/MS/MS analysis to know the chemical structure, and molecular weight and formula. Considering these details, along with the alterations in the saponin Af and Ab concentrations, it was presumed that the Ab-δ acts as a precursor for the synthesis of saponin Af and Ab. Thus, we predicted a biosynthetic pathway from the Ab-δ to Ab saponin. The inheritance analysis showed that the concentration of saponin Ab-δ is controlled by a single recessive gene in the mutant PE1905. The results from the present study would be helpful in understanding the mechanisms behind altered seed saponin composition in soybeans.     

Evaluation of Physiological Functionalities and Anti-inflammatory Activity on <Emphasis Type="Italic">in vitro</Emphasis> Cultured Adventitious Root of <Emphasis Type="Italic">Platycodon grandiflorum</Emphasis>

This study was executed to evaluate the phenolic content, DPPH, ABTS radical scavenging rate, nitrite scavenging rate, and anti-inflammatory activity from in vitro cultured adventitious root extract of different Platycodon grandiflorum(PG) variety. Total polyphenol and flavonoid content showed the highest amount in adventitious root extract of tetraploid PG, and followed by green petal, double petal and diploid PG extract. The DPPH radical scavenging activity showed that the increase was proportional to the concentration, especially, the scavenging activity at a concentration of 10 mg mL^-1 was higher than 80%. The ABTS radical scavenging activity was not significantly different among the PG varieties at the concentration of 5 mg mL^-1 or more, and generally showed high scavenging activity. The nitrite scavenging activity was affected by pH, at pH of 1.2, the scavenging effect of all of the extracts tested observed higher than that of the other two pH ranges. The cytotoxicity of PG extract at various concentrations, the survival rate of RAW 264.7 cell was more than 90% at a concentration of 200 μg mL^-1 or less, and it was confirmed that the macrophage cell showed little toxicity. After PG extract pretreatment at 50, 100, and 200 μg mL^-1, LPS-treated experimental group significantly inhibited NO production in a dose-dependent manner. The dose-response trends followed quadratic regressions in all PG varieties. The PG extracts showed a considerable range of influence on cytokine secretion. The effect of adventitious root extracts of PG against inflammatory mediators TNF-α, IL-6 and IL-1β production showed the most significant anti-inflammatory activity.     

Cytogenetic Diversity of Korean Hexaploid Wheat (<Emphasis Type="Italic">Triticum aestivum</Emphasis> L.) with Simple Sequence Repeats (SSRs) by Fluorescence <Emphasis Type="Italic">In Situ</Emphasis> Hybridization

Chromosomes of Korean hexaploid wheat were investigated to compare the chromosomal karyotype for cytogenetic diversity. Chromosomal karyotyping was done with in situ hybridization using two types of simple sequence repeats (SSR)s, (AAG)₅ and (AAC)₅ labeled with tetramethyl-rhodamine-5-dUTP and fluorescein-12-dUPT as a fluorescence, respectively. The two SSRs as cytogenetic markers revealed that the cytogenetic characteristics of the wheat chromosomes were remarkably a B genome. In this study, the chromosomal karyotype of Keumkang, a Korean hexaploid wheat cultivar, was the A, B, and D genomes used as a cytogenetic reference. The expressed signals from the two SSRs showed a difference in the chromosomal karyotype of chromosome 1B among the Korean hexaploid wheat. The distribution pattern and the degree of condensation for the (AAG)₅ and (AAC)₅ signals on the short arm of chromosome 1B were different in the Korean hexaploid wheat shown in descending order: Keumkang > Joeun > Johan > Olgeuru. Olgeuru had a lower level of distribution and condensation for the two SSRs signals compared to the other Korean hexaploid wheat. In the A genome, chromosome 7A showed an unbalanced expression of the (AAG)₅ signal on the distal region of the short and long arms in several Korean hexaploid wheat while Joeun, a Korean hexaploid wheat, showed a definite (AAG)₅ signal on the distal region of each arm of chromosome 7A. Among the Korean hexaploid wheat, Shinmichal1, a Korean hexaploid waxy wheat, had a chromosome with a unique expression pattern for (AAG)₅ and (AAC)₅ compared the other Korean hexaploid wheat. Those cytogenetic differences identified in this study are useful as an indicator to improve the cytogenetic diversity in the Korean wheat breeding program.     

Effects of Nitrogen,Phosphorus and Potassium Fertilizers on Growth Characteristics of Two Species of Bellflower (Platycodon grandiflorum)

Journal of Crop Science and Biotechnology - Fertilization plays a vital role to enhance productivity in several medicinal plants, including Bellflower. A pot experiment was conducted in 2018 to...     

Genotypic Variation in Fatty Acids in Whole Grain Sesame (Fatty Acids in Whole Grain Sesame)

Journal of Crop Science and Biotechnology - Fatty acids (FAs) are important desirable compounds in oil crops. Here, we evaluated the amounts of 14 FAs in sesame grains using gas chromatography mass...     

Re-examination of the standard cultivation practices of rice in response to climate change in Korea

The impact of climate change has been simulated or estimated to bring about yield decline and quality deterioration of rice in Korea, a temperate country. To cope with these negative impacts, here we propose likely changes in the standard cultivation practices of rice in consideration of the current information on the progress/prediction of climate change and related physiological aspects of rice. Shifting grain-filling period could be a promising choice to optimize temperature for rice grain-filling, a crucial growth stage to productivity, hence providing rice plants with sufficient duration and solar radiation for the period. This choice, however, shortens days to flowering by the additive combined effects of high temperature by delayed transplanting, temperature rise itself by climate change, and accelerated phase change of rice by high temperature and short day-length. These combined effects may delay the time of transplanting in a great extent, hence reducing biomass accumulation of rice before flowering. In these conditions, recovering decreased biomass production is the key concern for rice productivity. This includes raising healthy seedlings by omitting the covering process, dense planting, and nutrient management to enhance plant’s uptake activity. Current standard water management, especially mid-term drainage and intermittent irrigation, would have more importance in the future since they mitigate methane emission from the paddy. Field monitoring for weeds and pests would be an important first step to identify newly developing or thriving species for establishing subsequent controlling strategies. Earlier weed control should be emphasized through adjusting time of herbicide application.     

Rapid screening and selection of low-caffeine-containing tea (Camellia sinensis) trees by a colorimetric method

A simple and rapid colorimetric method for the determination of caffeine has been developed. Tea tree lines from the Hadong region in South Korea differ widely in their caffeine contents and this colorimetric method facilitated an efficient screening strategy for the selection of low‐caffeine‐containing lines. A high correlation was observed between the values obtained with colorimetric and high‐performance liquid chromatographic analysis. Among the selected tree lines, the caffeine content for the lowest caffeine‐containing tea tree line (H‐19) was 178.35 μg/g dry weight basis, which was 61‐fold less productive than the highest caffeine‐producing tea tree line (H‐82). Caffeine contents of the selected tea tree lines remained similar during the corresponding collection periods. The colorimetric method is of great practical value in screening low‐caffeine‐containing tea trees.