Antibacterial and antifungal activity of pinosylvin, a constituent of pine

The antibacterial and antifungal activities of pinosylvin (3,5-dihydroxy-trans-stilbene), a constituent of pine, were studied and compared with those of resveratrol (3,5,4'-trihydroxy-trans-stilbene). Pinosylvin exhibited more potent growth inhibitory activity against Candida albicans and Saccharomyces cerevisiae.     

Prediction of internal bond strength in a medium density fiberboard process using multivariate statistical methods and variable selection

This paper presents new data mining-based multivariate calibration models for predicting internal bond strength from medium density fiberboard (MDF) process variables. It utilizes genetic algorithms (GA) based variable selection combined with several calibration methods. By adopting a proper variable selection scheme, the prediction performance can be improved because of the exclusion of non-informative variable(s). A case study using real plant data showed that the calibration models based on the process variables selected by GA produced better performance than those without variable selection, with the exception of the radial basis function (RBF) neural networks model. In particular, the calibration model based on supervised probabilistic principal component analysis (SPPCA) yielded better performance (only when using GA) than partial least squares (PLS), orthogonal-PLS (O-PLS), and radial basis function neural networks models. The SPPCA model benefits most from the use of GA-based variable selection in this case study. N. André and H.-W. Cho equally contributed to this work.     

Application of biotechnology in breeding lentil for resistance to biotic and abiotic stress

Summary Lentil is a self-pollinating diploid (2n = 14 chromosomes) annual cool season legume crop that is produced throughout the world and is highly valued as a high protein food. Several abiotic stresses are important to lentil yields world wide and include drought, heat, salt susceptibility and iron deficiency. The biotic stresses are numerous and include: susceptibility to Ascochyta blight, caused by Ascochyta lentis; Anthracnose, caused by Colletotrichum truncatum; Fusarium wilt, caused by Fusarium oxysporum; Sclerotinia white mold, caused by Sclerotinia sclerotiorum; rust, caused by Uromyces fabae; and numerous aphid transmitted viruses. Lentil is also highly susceptible to several species of Orabanche prevalent in the Mediterranean region, for which there does not appear to be much resistance in the germplasm. Plant breeders and geneticists have addressed these stresses by identifying resistant/tolerant germplasm, determining the genetics involved and the genetic map positions of the resistant genes. To this end progress has been made in mapping the lentil genome and several genetic maps are available that eventually will lead to the development of a consensus map for lentil. Marker density has been limited in the published genetic maps and there is a distinct lack of co-dominant markers that would facilitate comparisons of the available genetic maps and efficient identification of markers closely linked to genes of interest. Molecular breeding of lentil for disease resistance genes using marker assisted selection, particularly for resistance to Ascochyta blight and Anthracnose, is underway in Australia and Canada and promising results have been obtained. Comparative genomics and synteny analyses with closely related legumes promises to further advance the knowledge of the lentil genome and provide lentil breeders with additional genes and selectable markers for use in marker assisted selection. Genomic tools such as macro and micro arrays, reverse genetics and genetic transformation are emerging technologies that may eventually be available for use in lentil crop improvement.     

DNA profiling and genetic diversity of Korean soybean (<Emphasis Type="Italic">Glycine max</Emphasis> (L.) Merrill) landraces by SSR markers

Approximately 7,000 accessions of Korean soybean (Glycine max (L.) Merrill) landraces, largely composed of three collections, the Korea Atomic Energy Research Institute’s soybean (KAS), the Korean Crop Experiment Station’s soybean (KLS) and the Korean Agricultural Development and Technology Center’s soybean (KADTC) collections, have been conserved at the Rural Development Administration (RDA) genebank in Korea. The accessions within collections were classified based on their traditional uses such as sauce soybean (SA), sprouted soybean (SP), soybean for cooking with rice (SCR), and OTHERS. A total of 2,758 accessions of Korean soybean landraces were used to profile and to evaluate genetic structure using six SSR loci. A total of 110 alleles were revealed by at the six SSR loci. The number of alleles per SSR locus ranged from 9 to 39 in Satt187 and Satt_074, respectively. The number of alleles ranged from 87 in the KADTC collection to 96 in the KLS collection, and from 63 in the SCR group to 95 in the SP group. Nei’s average genetic diversity ranged from 0.68 to 0.70 across three collections, and 0.64 to 0.69 across the usage groups. The average between-group differentiation (G _st) was 0.9 among collections, and 4.1 among the usage groups. The similar average diversity among three collections implies that the genetic background of the three collections was quite similar or that there were a large number of duplicate accessions in three collections. The selection from the four groups classified based upon usage may be a useful way to select accessions for developing a Korean soybean landrace core collection at the RDA genebank. DNA profile information of accessions will provide indications of redundancies or omissions and aid in managing the soybean collection held at the RDA genebank. The information on diversity analysis could help to enlarge the genetic diversity of materials in breeding programs and could be used to develop a core collection.     

Influence of green tea polyphenol in rats with arginine-induced renal failure

To determine whether green tea polyphenol ameliorates the pathological conditions induced by excessive dietary arginine, green tea polyphenol was administered to rats at a daily dose of 50 or 100 mg/kg body weight for 30 days with a 2% w/w arginine diet. In arginine-fed control rats, urinary and/or serum levels of guanidino compounds, nitric oxide (NO), urea, protein, and glucose increased significantly, while the renal activities of the oxygen species-scavenging enzymes superoxide dismutase (SOD) and catalase decreased, compared with casein-fed rats. However, rats given green tea polyphenol showed significant and dose-dependent decreases in serum levels of creatinine (Cr) and urea nitrogen and urinary excretion of Cr, and they exerted a slight reduction of nitrite plus nitrate, indicating that green tea polyphenol reduced the production of uremic toxins and NO. In addition, in arginine-fed rats the urinary urea, protein, and glucose level increases were reversed by the administration of green tea polyphenol. Moreover, in rats given green tea polyphenol the SOD and catalase activities suppressed by excessive arginine administration increased dose-dependently, implying the biological defense system was augmented as a result of free radical scavenging. These results suggest that green tea polyphenol would ameliorate renal failure induced by excessive dietary arginine by decreasing uremic toxin, and NO production and increasing radical-scavenging enzyme activity.     

Reduced trigonelline accumulation due to rhizobial activity improves grain yield in peanut (Arachis hypogaea L.)

Abstract

Crop improvement for drought tolerance is critical for the future of crop production. The objectives were to examine the relationship between trigonelline (TRG) accumulation and yield traits in 10 peanut (Arachis hypogaea L.) genotypes inoculated with two commonly used nitrogen-fixing Rhizobium spp., and to evaluate a role of TRG on growth traits. TRG increased as a defensive metabolite in response to water deficit, but resulted in the reduction of the number of nodules and yield. Symbiotic rhizobial activity helped plants to improve yield particularly in a fully irrigated field rather than under reduced irrigation. TRG concentrations in genotypes (7 out of 10) increased under reduced irrigation as compared with those under full irrigation in two years. Mean number of nodules at maturity (120 days after planting) across genotypes under reduced irrigation were 89 in the control, 111 in Lift, and 161 in Histick treatments, among which Histick was significant (p < 0.05) for nodulation. Mean pod yields in the control, Histick, and Lift treatments were 1.69, 2.34 and 1.87 Mg ha^-1, respectively, under reduced irrigation. Under full irrigation, pod yields were 3.35 in the control, 4.50 in Histick and 3.41 Mg ha^-1 in Lift treatments, but were more significantly improved as treated with Histick than other treatments. Genotype ICGS-76 produced the highest pod yield (5.13 Mg ha^-1) as treated with Histick. All genotypes treated with Histick and Lift biosynthesized less TRG (decreased from 5.8 to 65.3% relative to the control) but produced larger numbers of pods (increased from 9.2 to 80.4% relative to the control), which resulted in substantially higher pod yields.     

The effect of fertilization on early growth of konara oak and Japanese zelkova seedlings planted in a harvested pitch pine plantation

We determined a suitable amount of fertilizer for konara oak(Quercus serrata) and Japanese zelkova(Zelkova serrata) planted in a harvested pitch pine(Pinus rigida) plantation. Two-year-old bare-root seedlings of konara oak and one-year-old containerized seedlings of Japanese zelkova were planted in April 2011. Three plots were established for each tree species to evaluate each of three fertilization applications. Solid compound fertilizer(N:P:K = 3:4:1) was applied yearly in three amounts(control: no fertilization, F1: 180 kg ha-1, and F2:360 kg ha-1), every May from 2011 to 2013. We measured the root collar diameter and height, and analyzed the compartmental N and P concentrations. Compartmental N concentrations of konara oak and Japanese zelkova were not consistent based on amount of fertilization. However,the compartmental P concentrations of konara oak and Japanese zelkova were significantly different in the order of F2, F1, and control. Although the differences in growth of konara oak appeared after 3 years of fertilization,Japanese zelkova showed differences after only 2 years of fertilization owing to differences in seedling type. Growth of konara oak was affected by fertilization at F1 and F2 in2013. However, growth of Japanese zelkova was affected only at F2. Nutrient demand of Japanese zelkova appeard to be higher than that of konara oak, at least during the early growing period. Results from this study could be practically used in harvested pitch pine plantations to determine appropriate fertilization regimes.     

Variation and correlation analysis of flavonoids and carotenoids in Korean pigmented rice (Oryza sativa L.) cultivars

Flavonoids and carotenoids of pigmented rice ( Oryza sativa L.), including five black cultivars and two red cultivars, from Korea were characterized to determine the diversity among the phytochemicals and to analyze the relationships among their contents. Black cultivars were higher in flavonoids and carotenoids than the red and white cultivars. The profiles of eight phytochemicals identified from the rice grains were subjected to principal component analysis (PCA) to evaluate the differences among cultivars. PCA could fully distinguish between these cultivars. The Heugjinjubyeo (BR-1) and Heugseolbyeo (BR-2) cultivars were separated from the others based on flavonoid and carotenoid concentrations. Flavonoid contents had a positive correlation with carotenoid contents among all rice grains. The BR-1 and BR-2 cultivars appear to be good candidates for future breeding programs because they have simultaneously high flavonoid and carotenoid contents.     

Lethal Effects of Pulsed High-Voltage Discharge on Marine Plankton and Escherichia coli

Ballast seawater is considered globally as a major vector for invasions of non-indigenous organisms. Several technologies have been tested for their ability to remove organisms from ballast water. In the present study, we constructed a novel pulsed high-voltage discharge (PHVD) system that could operate in either high current mode with several hundred amperes or shockwave generating mode with relatively lower current in seawater. In laboratory-scale experiments, the PHVD system with shockwave-generating mode was found to be more effective in killing zooplankton (1.9- to 4.0-fold) and phytoplankton (3.3-fold) than high current mode at discharge with 300–500 pulses at 7.1 kV. Further experiments were carried out at different voltages and pulse-numbers to examine effects of the shockwave-generating PHVD system on viabilities of one zooplankton larva, two phytoplankton species, and an indicator bacterium suspended in seawater in a static chamber. For zooplankton, live cells were not detected at discharge with 400 pulses at 13 kV. For phytoplankton, the initial live cells of a dinoflagellate was decreased by 77?±?0.5%, and the initial chl a concentration of a diatom was decreased by 76?±?6% at discharge with 700 pulses at 13 kV. For an indicator bacterium Escherichia coli, live cells were not detected at discharges with 200 or 700 pulses at 13 kV. Measurements of ATP content of organisms showed congruent results with those obtained by the above methods, suggesting it may be a rapid method for evaluating treatment efficiency. Though further scale-up studies are necessary, these results suggest that the PHVD system have a high potential for applying to ballast seawater treatment.