Nontimber forest products and biodiversity management in the Pacific Northwest

Nontimber forest product harvesting in the Pacific Northwest is neither a new activity nor a disappearing relic of the pre-industrial era. Though the emphasis may have shifted from subsistence to commercial and recreational pursuits, harvesting and harvesters of wild species are still widespread throughout the region. Hundreds of businesses and thousands of harvesters earn part or all of their income from the harvests. Every year thousands of pounds and hundreds of nontimber forest products valued in the hundreds of millions of dollars are harvested from regional public and private forests. This harvesting of a large diversity of species represents a considerable subset of the overall terrestrial biodiversity in Pacific Northwest forests. Despite widespread extraction, little investment in research, planning, or basic inventorying and monitoring has been done on nontimber forest products. Without better information, land managers will be increasingly unable to make informed decisions on how to manage nontimber forest product biodiversity sustainably as demand for products increases.     

Ecology and regeneration of tropical dry forests in the Americas: Implications for management

Dry forests represent the most endangered ecosystem in tropical regions and continue to be one of the most sought after environments for human colonization, development and production. In spite of this, dry forests are one of the least well studied tropical habitats. This special issue is dedicated to reviewing much of the information that exists about tropical dry forest in the Americas. The introduction summarizes the articles presented herein, highlighting management strategies that are suggested throughout the special issue that may be useful for conserving tropical dry forest environments.     

Epiphyte diversity and biomass loads of canopy emergent trees in Chilean temperate rain forests: A neglected functional component

We document for the first time the epiphytic composition and biomass of canopy emergent trees from temperate, old-growth coastal rainforests of Chile (42°30′S). Through tree-climbing techniques, we accessed the crown of two large (c. 1 m trunk diameter, 25–30 m tall) individuals of Eucryphia cordifolia (Cunoniaceae) and one large Aextoxicon punctatum (Aextoxicaceae) to sample all epiphytes from the base to the treetop. Epiphytes, with the exception of the hemi-epiphytic tree Raukaua laetevirens (Araliaceae), were removed, weighed and subsamples dried to estimate total dry mass. We recorded 22 species of vascular epiphytes, and 22 genera of cryptogams, with at least 30 species of bryophytes, liverworts and lichens. The dominant vascular epiphytes were Fascicularia bicolor (Bromeliaceae), Raukaua laetevirens, Sarmienta repens (Gesneriaceae), and filmy ferns (Hymenophyllaceae). Epiphyte loads per tree ranged between 134 and 144 kg dry mass, with 60–70% water. The hemi-epiphytic tree R. laetevirens added between 1 and 2.6 t of dry mass to each host tree. A main component of epiphyte biomass, making 70% of the weight, was detritus and roots, while leaves, stems, and fronds made up the remaining 30%. Emergent trees hold a high proportion of the regional diversity of epiphytes: 33% of all flowering epiphytes, and 50% of all filmy ferns described for Chilean temperate forests. Dry epiphyte biomass associated only with the emergent E. cordifolia trees in coastal forests was estimated in 10 t/ha. Epiphyte biomass may store up to 300 l of water in each emergent tree, and add 40–150% of photosynthetic biomass to the tree crowns. Based on this evidence, epiphytes may play key but generally neglected roles in ecosystem carbon uptake, water storage, and nutrient cycling. Moreover, emergent trees represent nuclei of biodiversity and ecosystem functions distributed throughout mature forests. Forest management should recognize large trees as significant management units for the preservation of biodiversity and ecological functions.     

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

Verrucomicrobia are ubiquitous in soil, but members of this bacterial phylum are thought to be present at low frequency in soil, with few studies focusing specifically on verrucomicrobial abundance, diversity, and distribution. Here we used barcoded pyrosequencing to analyze verrucomicrobial communities in surface soils collected across a range of biomes in Antarctica, Europe, and the Americas (112 samples), as well as soils collected from pits dug in a montane coniferous forest (69 samples). Data collected from surface horizons indicate that Verrucomicrobia average 23% of bacterial sequences, making them far more abundant than had been estimated. We show that this underestimation is likely due to primer bias, as many of the commonly used PCR primers appear to exclude verrucomicrobial 16S rRNA genes during amplification. Verrucomicrobia were detected in 180 out of 181 soils examined, with members of the class Spartobacteria dominating verrucomicrobial communities in nearly all biomes and soil depths. The relative abundance of Verrucomicrobia was highest in grasslands and in subsurface soil horizons, where they were often the dominant bacterial phylum. Although their ecology remains poorly understood, Verrucomicrobia appear to be dominant in many soil bacterial communities across the globe, making additional research on their ecology clearly necessary.     

EFFECT OF PETUNIA STOCK PLANT NUTRITIONAL STATUS ON FERTILIZER RESPONSE DURING PROPAGATION

Fertilization strategies during stock plant and cutting production are linked in terms of cutting nutrient levels and quality. Objectives were to evaluate (1) the effect of stock plant nutrition on tissue nutrient concentration and growth during vegetative propagation and (2) response to fertilizer during propagation for cuttings with 4 different initial tissue nutrient concentrations. ‘Supertunia Royal Velvet’ petunia stock plants were grown under constant fertigation of 0, 50, 100 or 200 mg nitrogen (N)^.L^?1 for 21 days. The 200 mg N^.L^?1 solution contained 150 nitrate (NO₃-N), 50 ammonium (NH₄-N), 24 phosphorus (P), 166 potassium (K), 40 calcium (Ca), 20 magnesium (Mg), 0.7 sulfur (S), 1.0 iron (Fe), 0.5 manganese (Mn), 0.5 zinc (Zn), 0.24 copper (Cu), 0.24 boron (B), and 0.1 molybdenum (Mo). Providing a complete fertilizer during propagation of petunia, beginning immediately after sticking of cuttings, reduces the risk of nutrient deficiency. Particularly in situations where fertilizer is not applied early during propagation, stock plants should be managed to ensure unrooted cuttings have adequate nutrient reserves.     

Effects-based Assays in the Earthworm Aporrectodea caliginosa: Their Utilisation for Evaluation of Contaminated Sites before and after Remediation (8 pp)

Goal, Scope and Background   In a preliminary ecological risk assessment, potential adverse effects of contaminants are often evaluated by measuring chemical residues and comparing these with regulatory guidelines. However limitations with this approach with regards to establishing actual effects have resulted in the increasing usage of sublethal effects-based assays, including biomarkers, to evaluate the hazard posed by contaminants in the environment. In this study a number of effects-based endpoints in the earthworm Aporrectodea caliginosa were evaluated to determine their comparative sensitivity for assessment of adverse effects of soil contaminated with petroleum hydrocarbons. Methods   Adult and juvenile earthworms were exposed for 4 weeks to sublethal concentrations of soil collected before and after remediation of a petroleum-contaminated site. A suite of endpoints were measured in these earthworms, including mortality, fecundity, growth, and juvenile maturation, and two less traditional endpoints, the biomarker, the neutral red retention assay (NRRA) and an avoidance behaviour test. Results and Discussion   Cocoon viability in this species is not a reliable parameter to measure, due to low viability in controls and a high coefficient of variation. Growth in adult earthworms was a more sensitive parameter than cocoon production. Maturation and growth of juveniles have been proposed as more sensitive endpoints than adult cocoon production and growth respectively. This was not apparent in the growth parameters, but maturation of juveniles did appear to be more sensitive than cocoon production by adults. The NRRA was a more sensitive parameter than cocoon production, and the NRRA and growth were both affected at the lowest concentration tested. The NRRA response appeared to be more sensitive than growth, but NRRT was only evaluated in one soil only, while the other parameters were assessed in two soils. However, the NRRA has previously been found to be more sensitive than growth after exposure to a number of contaminants. The avoidance behaviour assay exhibited similar sensitivity to growth and fecundity and could therefore be useful as a simple pre-screening test. Conclusion   The chronic endpoints, growth, cocoon production, and juvenile maturation parameters, were all sensitive endpoints for detecting exposure to the petroleum-hydrocarbon-contaminated soil. The NRRA was the most sensitive of the endpoints assessed and could be used as an early-warning indicator to predict adverse impacts. Avoidance behaviour could be used as a simple pre-screening test to evaluate contaminated soils prior to more extensive and invasive testing. Recommendations and Perspective   Measuring chemical concentrations in environmental samples is not always useful, as the toxicological impacts of exposure to these concentrations are not always discernible. However, the use of effects-based endpoints, either in situ or in the laboratory using laboratory-reared earthworms, can account for the bioavailability of chemicals in the soil, and can therefore provide information on the toxicological impacts of exposure. The assays tested in this research were sensitive indicators of exposure, and therefore can be used to determine potential ecological risks at contaminated sites and to monitor the progress of remediation at these sites.     

Occurrence of Azoxystrobin, Propiconazole, and Selected Other Fungicides in US Streams, 2005�C2006

Fungicides are used to prevent foliar diseases on a wide range of vegetable, field, fruit, and ornamental crops. They are generally more effective as protective rather than curative treatments, and hence tend to be applied before infections take place. Less than 1% of US soybeans were treated with a fungicide in 2002 but by 2006, 4% were treated. Like other pesticides, fungicides can move-off of fields after application and subsequently contaminate surface water, groundwater, and associated sediments. Due to the constant pressure from fungal diseases such as the recent Asian soybean rust outbreak, and the always-present desire to increase crop yields, there is the potential for a significant increase in the amount of fungicides used on US farms. Increased fungicide use could lead to increased environmental concentrations of these compounds. This study documents the occurrence of fungicides in select US streams soon after the first documentation of soybean rust in the US and prior to the corresponding increase in fungicide use to treat this problem. Water samples were collected from 29 streams in 13 states in 2005 and/or 2006, and analyzed for 12 target fungicides. Nine of the 12 fungicides were detected in at least one stream sample and at least one fungicide was detected in 20 of 29 streams. At least one fungicide was detected in 56% of the 103 samples, as many as five fungicides were detected in an individual sample, and mixtures of fungicides were common. Azoxystrobin was detected most frequently (45% of 103 samples) followed by metalaxyl (27%), propiconazole (17%), myclobutanil (9%), and tebuconazole (6%). Fungicide detections ranged from 0.002 to 1.15 ??g/L. There was indication of a seasonal pattern to fungicide occurrence, with detections more common and concentrations higher in late summer and early fall than in spring. At a few sites, fungicides were detected in all samples collected suggesting the potential for season-long occurrence in some streams. Fungicide occurrence appears to be related to fungicide use in the associated drainage basins; however, current use information is generally lacking and more detailed occurrence data are needed to accurately quantify such a relation. Maximum concentrations of fungicides were typically one or more orders of magnitude less than current toxicity estimates for freshwater aquatic organisms or humans; however, gaps in current toxicological understandings of the effects of fungicides in the environment limit these interpretations.     

Bayesian analysis of within-field variability of corn yield using a spatial hierarchical model

Understanding relationships of soil and field topography to crop yield within a field is critical in site-specific management systems. Challenges for efficiently assessing these relationships include spatially correlated yield data and interrelated soil and topographic properties. The objective of this analysis was to apply a spatial Bayesian hierarchical model to examine the effects of soil, topographic and climate variables on corn yield. The model included a mean structure of spatial and temporal co-variates and an explicit random spatial effect. The spatial co-variates included elevation, slope and apparent soil electrical conductivity, temporal co-variates included mean maximum daily temperature, mean daily temperature range and cumulative precipitation in July and August. A conditional auto-regressive (CAR) model was used to model the spatial association in yield. Mapped corn yield data from 1997, 1999, 2001 and 2003 for a 36-ha Missouri claypan soil field were used in the analysis. The model building and computation were performed using a free Bayesian modeling software package, WinBUGS. The relationships of co-variates to corn yield generally agreed with the literature. The CAR model successfully captured the spatial association in yield. Model standard deviation decreased about 50% with spatial effect accounted for. Further, the approach was able to assess the effects of temporal climate co-variates on corn yield with a small number of site-years. The spatial Bayesian model appeared to be a useful tool to gain insights into yield spatial and temporal variability related to soil, topography and growing season weather conditions.

At-sea distribution of waved albatrosses and the Galápagos Marine Reserve

Albatross populations worldwide are threatened by incidental takes in longline fishery operations. The recent establishment of the Galápagos Marine Reserve (GMR) is relevant to the longline bycatch issue, as it prohibits industrial longlining in the vicinity of the major nesting site of waved albatrosses (Phoebastria irrorata). However, the legality of the fishing protections is being challenged, highlighting a need for data on use of the GMR by albatrosses. We used satellite tracking over a total of four breeding seasons to determine the distribution of waved albatrosses inside and outside the GMR, and thereby assess the degree of protection that GMR provisions offer to this species. During the incubation period, breeding adults made commuting trips from the nesting island (Isla Española) to the Peruvian upwelling zone, traveling north, east, and south after leaving the nest. During the brooding period, the distribution contracted markedly, and most satellite fixes were within the GMR. During the rearing period, breeders performed both long trips outside the GMR and short trips within. The southeastern portion of the GMR is used throughout the incubation, brooding, and early rearing periods by breeding waved albatrosses. Indirect information from non-breeding adults indicates that they are likely to use the waters of the GMR extensively.