Spatial coupling of mTOR and autophagy augments secretory phenotypes

Protein synthesis and autophagic degradation are regulated in an opposite manner by mammalian target of rapamycin (mTOR), whereas under certain conditions it would be beneficial if they occurred in unison to handle rapid protein turnover. We observed a distinct cellular compartment at the trans side of the Golgi apparatus, the TOR-autophagy spatial coupling compartment (TASCC), where (auto)lysosomes and mTOR accumulated during Ras-induced senescence. mTOR recruitment to the TASCC was amino acid- and Rag guanosine triphosphatase-dependent, and disruption of mTOR localization to the TASCC suppressed interleukin-6/8 synthesis. TASCC formation was observed during macrophage differentiation and in glomerular podocytes; both displayed increased protein secretion. The spatial coupling of cells' catabolic and anabolic machinery could augment their respective functions and facilitate the mass synthesis of secretory proteins.     

Pyogenic bacterial infections in humans with MyD88 deficiency

MyD88 is a key downstream adapter for most Toll-like receptors (TLRs) and interleukin-1 receptors (IL-1Rs). MyD88 deficiency in mice leads to susceptibility to a broad range of pathogens in experimental settings of infection. We describe a distinct situation in a natural setting of human infection. Nine children with autosomal recessive MyD88 deficiency suffered from life-threatening, often recurrent pyogenic bacterial infections, including invasive pneumococcal disease. However, these patients were otherwise healthy, with normal resistance to other microbes. Their clinical status improved with age, but not due to any cellular leakiness in MyD88 deficiency. The MyD88-dependent TLRs and IL-1Rs are therefore essential for protective immunity to a small number of pyogenic bacteria, but redundant for host defense to most natural infections.     

Mapping of QTL associated with seed chemical content in a RIL population of common bean (Phaseolus vulgaris L.)

The character of flat versus round fruit shape is controlled by a single gene (S/s) on chromosome 6 in peach [Prunus persica (L.) Batsch], with the flat fruit phenotype produced by the S/s heterozygous genotype. We used 16 simple sequence repeat (SSR) markers at the S/s region and physically mapped them in the peach sequence. Seven were mapped in the new F1 population from a cross between the two flat fruit cultivars 'UFO-3' and ‘Sweet Cap’ that segregated for the S/s gene. Fourteen of the SSRs were mapped in the Prunus reference map (T×E), of which seven had already been mapped and seven were added within this work. Our results confirmed the position of S/s on the distal part of chromosome 6. Thirteen of the initial 16 markers were also studied in a collection of flat (66) and round (39) cultivars, where some of the alleles were associated to the character and one of them, the 131 bp allele of marker UDP98-412, predicted in 98.4 % of the cases the flat shape. This allele was highly predictive of the flat fruit character in an additional collection of 100 cultivars, and is an useful tool for marker-assisted selection of flat peaches and nectarines, a trait that is becoming of increasing interest in breeding programs as consumption of these fruits is growing in the European market.     

Evaluation of spatial and temporal variability of pasture based on topography and the quality of the rainy season

Yield and botanical composition of a given dry-land pasture are heavily influenced by rainfall distribution, and vary according to topography. Through analyzing these parameters, it is possible to identify patterns of spatial distribution, related to topographic characteristics, which can be used to improve spatial management of pasture. The main objective of this project was to assess the role of rainfall, temperature and topography in the spatial and temporal variability of pasture and establish models for predicting the spatial distribution and yield of certain plant species, based on its topographic characteristics. This study was carried out over three years, 2004 to 2006, in a dry-land pasture located in Southern Portugal. The data obtained were analyzed as a function of distance to flow lines and the results demonstrate that certain topographical characteristics, associated with agronomic information, can be very useful in explaining the spatial and temporal variability of yield and the botanical composition of the pasture. The slope of the linear regression of the variables mentioned can be used to estimate the spatial variation of yield and the botanical composition as a function of distance to flow lines. The regression coefficient can be estimated from the annual rainfall, given the strong correlation between the two.     

Transition state stabilization by a catalytic RNA

The hairpin ribozyme catalyzes sequence-specific cleavage of RNA through transesterification of the scissile phosphate. Vanadate has previously been used as a transition state mimic of protein enzymes that catalyze the same reaction. Comparison of the 2.2 angstrom resolution structure of a vanadate-hairpin ribozyme complex with structures of precursor and product complexes reveals a rigid active site that makes more hydrogen bonds to the transition state than to the precursor or product. Because of the paucity of RNA functional groups capable of general acid-base or electrostatic catalysis, transition state stabilization is likely to be an important catalytic strategy for ribozymes.     

Anticipatory reproduction and population growth in seed predators

Mast seeding, the intermittent, synchronous production of large seed crops by a population of plants, is a well-known example of resource pulses that create lagged responses in successive trophic levels of ecological communities. These lags arise because seed predators are thought capable of increasing reproduction and population size only after the resource pulse is available for consumption. The resulting satiation of predators is a widely cited explanation for the evolution of masting. Our study shows that both American and Eurasian tree squirrels anticipate resource pulses and increase reproductive output before a masting event, thereby increasing population size in synchrony with the resource pulse and eliminating the population lag thought to be universal in resource pulse systems.     

The mosquito genome--a breakthrough for public health

The Anopheles gambiae genome sequence will accelerate identification of new insect vector target genes leading to improved strategies for malaria control.     

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

Disease-suppressive soils are exceptional ecosystems in which crop plants suffer less from specific soil-borne pathogens than expected owing to the activities of other soil microorganisms. For most disease-suppressive soils, the microbes and mechanisms involved in pathogen control are unknown. By coupling PhyloChip-based metagenomics of the rhizosphere microbiome with culture-dependent functional analyses, we identified key bacterial taxa and genes involved in suppression of a fungal root pathogen. More than 33,000 bacterial and archaeal species were detected, with Proteobacteria, Firmicutes, and Actinobacteria consistently associated with disease suppression. Members of the γ-Proteobacteria were shown to have disease-suppressive activity governed by nonribosomal peptide synthetases. Our data indicate that upon attack by a fungal root pathogen, plants can exploit microbial consortia from soil for protection against infections.     

Effects of Plant Extracts on the Reversal of Glucose-Induced Impairment of Stress-Resistance in Caenorhabditis elegans

Enhanced blood glucose levels are a hallmark of diabetes and are associated with diabetic complications and a reduction of lifespan. In order to search for plant extracts that display preventive activities in such a scenario, we tested 16 extracts used in human nutrition for their survival enhancing activities in the nematode Caenorhabditis elegans. Nematodes were exposed for 48 h to 10 mM glucose in the absence or presence of 0.1 % extract. Thereafter, survival was measured at 37 °C. Extracts made from coffee, kola, rooibos and cinnamon, did not influence the glucose-induced reduction of survival. Those made from ginseng, camomile, lime blossom, paraguay tea, balm, rhodiola, black tea, or knotgrass all extended the lifespan of the glucose-treated nematodes significantly but did not rescue survival completely. Extracts from the leaves of blackberries, from hibiscus, elderberries, or jiaogulan completely countered the glucose-induced survival reduction. A potent activation of the proteasome was shown for the most preventive extracts suggesting a more efficient degradation of proteins impaired by glucose. In conclusion, we present a simple animal model to screen for plant extracts with potency to reverse glucose toxicity. Extracts from blackberry leaves, hibiscus, elderberries, and jiaogulan were identified as very potent in this regard whose exact mechanisms of action appear worthwile to investigate at the molecular level.     

Protein and energy utilization of boiled rice-legume diets and boiled cereals in growing rats

In growing rats, boiled milled rice-legume diets (2:1 N ratio) had lower energy digestigibility than boiled milled rice and equal if not better true digestibility, biological value, and net protein utilization (NPU). Rice-soybean diets showed better NPU than the other rice-legume diets. Boiled whole-grain corn and sorghum had lower digstible energy and NPU than boiled milled rice. NPU of the diets did not follow strictly the trend of the amino acid score of the diets; phenol (tannin) content reduced energy and protein digestibility of all diets, but sugars reduced energy and protein digestibilities of rice-legume diets only.