Habitat suitability models of saproxylic red-listed boreal forest species in long-term matrix management: Cost-effective measures for multi-species conservation

Understanding of how a large landscape or network of conservation areas and habitats of red-listed species change in time is an important topic when addressing the temporal interplay between protected areas and matrix. We developed models of habitat suitability indices (HSI) for saproxylic red-listed invertebrate and fungal species, accounting for roughly 70% of all red-listed boreal forest species of the study area in eastern Finland. By using a forestry planning program that incorporates various optimisation methods we analysed trade-offs between timber production and amount of habitats of saproxylic red-listed species within a 60-year period. We also produced production possibility frontiers that show how to increase quality of the matrix with least costs. Moreover, we analysed how habitat suitability criteria used in optimisations affect the area of different habitat quality classes.

Our analysis shows that by adopting HSI models in long-term matrix management, it is possible to increase habitats for several red-listed species without substantial losses in timber production. The increase in habitat area is achieved mainly by decreasing the area that is thinned compared to intensive timber production plan. In the long term, this seems to be a novel cost-effective method to increase the quality of the matrix for red-listed saproxylic species. However, the selected optimisation method and the criteria or specification of the management objective for red-listed forest species have a strong effect on results when HSI models are used in conservation planning. Therefore any practical application must be performed with great care.     

Applicability of the soil gradient method for estimating soil–atmosphere CO2, CH4, and N2O fluxes for steppe soils in Inner Mongolia

For evaluating the applicability of the soil gradient method as a substitute for CO₂‐, CH₄‐, and N₂O‐flux measurements in steppe, we carried out chamber measurements and determined soil gas concentration at an ungrazed (UG99) and a grazed (WG) site in Inner Mongolia, China. The agreement of the concentration‐based flux estimates with measured chamber‐based fluxes varied largely depending on the respective GHG in the sequence CO₂ > CH₄ >> N₂O. A calibration of the gas‐transport parameter used to calculate fluxes based on soil gas concentrations improved the results considerably for CO₂ and CH₄. After calibration, the average deviation from the chamber‐based annual cumulative flux for both sites was 11.5%, 10.5%, and 59% for CO₂, CH₄, and N₂O. The gradient method did not constitute an adequate stand‐alone substitute for greenhouse‐gas flux estimation since a calibration using chamber‐based measurements was necessary and vigorous production processes were confined to the uppermost, almost water‐saturated soil layer.     

Yield profile of tall fescue (Festuca arundinacea) in comparison with meadow fescue (F. pratensis) in Finland

Yield profile characteristics of tall fescue (Festuca arundinacea Schreb.), cv. Retu, were compared with those of meadow fescue (Festuca pratensis Huds.). The study was conducted in Finland and was based on official variety trial data recorded between 1980 and 1998 at 17 trial sites between latitudes 60° and 66°N. The crops were managed according to silage‐cutting regimes. The pattern of yield formation of the tall fescue cv. Retu differed significantly from that of meadow fescue cultivars, both within a growing season as well as in sward age. Tall fescue cv. Retu established slowly, and the dry‐matter (DM) yield from the first cut, made in the first year of harvest, was significantly lower than that for meadow fescue. In the second and third years, the DM yield from the first cut did not differ between tall fescue and meadow fescue. Tall fescue produced significantly higher DM yield as regrowth (second and third cuts) than meadow fescue. The sward age significantly affected total DM production. In first‐year swards, there were no significant differences in total DM yield between tall fescue and meadow fescue but, in the second‐ and third‐year swards, tall fescue produced significantly higher DM yields than meadow fescue. The difference in yield profile between tall fescue and meadow fescue was similar in all the environments included in the study. DM yield for the first cut (kg DM ha^–1) for tall fescue cv. Retu, in comparison with meadow fescue cultivars, was 2495 vs. 3099 (P < 0·001), 3735 vs. 3741 (NS, P=0·94) and 3553 vs. 3468 (NS, P=0·30) in the first‐, second‐ and third‐year swards respectively. The respective DM regrowth yields (second plus third cut) were: 6059 vs. 5416 (P < 0·001); 5445 vs. 4221 (P < 0·001); and 5580 vs. 4113 (P < 0·001) in first‐, second‐ and third‐year swards. Total DM yields per season for tall fescue vs. meadow fescue were (kg DM ha^–1) 8554 vs. 8515 (NS, P=0·69), 9180 vs. 7962 (P < 0·001) and 9133 vs. 7581 (P < 0·001) in first‐, second‐ and third‐year swards respectively. Over the three‐year sward rotation period, which is common in Finland, tall fescue produced on average 12% higher DM yield than meadow fescue. Both tall fescue and meadow fescue suffered little winter damage in Finnish conditions; the differences between cultivars of the two species were small. The results indicated that tall fescue cv. Retu is a productive and persistent forage species suited to Finnish growing conditions.     

Comparison of chlorophyll fluorescence curves and texture analysis for automatic plant identification

With automatic plant identification methods, the amount of herbicides used in agriculture can be reduced when herbicides are sprayed only on weeds. In the present study, leaves of oat (Avena sativa) and dandelion (Taraxacum officinale, TAROF) were arranged so that there was overlap between the species, imaged with a pulse amplitude modulation fluorescence camera and photographed with a digital color camera. The fluorescence induction curves from each pixel were parameterized to obtain a set of features and from color photographs, texture features were calculated. A support vector algorithm that also performed feature selection was used for pattern recognition of both data sets. Fluorescence-based identification worked well with oat leaves, producing 92.2 % of correctly identified pixels, whereas the texture-based method often mis-identified the central vein of a TAROF leaf as oat, identifying correctly only 66.5 % of oat pixels. With TAROF that shows a clear dicot-type texture, the texture method was slightly better (96.4 % correctly identified pixels) than the fluorescence method (94.6 %). In fluorescence-based identification, the accuracy varied between entire TAROF leaves, probably reflecting the genetic variability of TAROF. The results suggest that the accuracy of identification could be improved by combining two identification methods.     

Soil–atmosphere CO2, CH4 and N2O fluxes in boreal forestry-drained peatlands

Greenhouse gas emissions from managed peatlands are annually reported to the UNFCCC. For the estimation of greenhouse gas (GHG) balances on a country-wide basis, it is necessary to know how soil–atmosphere fluxes are associated with variables that are available for spatial upscaling. We measured momentary soil–atmosphere CO₂ (heterotrophic and total soil respiration), CH₄ and N₂O fluxes at 68 forestry-drained peatland sites in Finland over two growing seasons. We estimated annual CO₂ effluxes for the sites using site-specific temperature regressions and simulations in half-hourly time steps. Annual CH₄ and N₂O fluxes were interpolated from the measurements. We then tested how well climate and site variables derived from forest inventory results and weather statistics could be used to explain between-site variation in the annual fluxes. The estimated annual CO₂ effluxes ranged from 1165 to 4437 g m⁻² year⁻¹ (total soil respiration) and from 534 to 2455 g m⁻² year⁻¹ (heterotrophic soil respiration). Means of 95% confidence intervals were ±12% of total and ±22% of heterotrophic soil respiration. Estimated annual CO₂ efflux was strongly correlated with soil respiration at the reference temperature (10 °C) and with summer mean air temperature. Temperature sensitivity had little effect on the estimated annual fluxes. Models with tree stand stem volume, site type and summer mean air temperature as independent variables explained 56% of total and 57% of heterotrophic annual CO₂ effluxes. Adding summer mean water table depth to the models raised the explanatory power to 66% and 64% respectively. Most of the sites were small CH₄ sinks and N₂O sources. The interpolated annual CH₄ flux (range: −0.97 to 12.50 g m⁻² year⁻¹) was best explained by summer mean water table depth (r² = 64%) and rather weakly by tree stand stem volume (r² = 22%) and mire vegetation cover (r² = 15%). N₂O flux (range: −0.03 to 0.92 g m⁻² year⁻¹) was best explained by peat CN ratio (r² = 35%). Site type explained 13% of annual N₂O flux. We suggest that water table depth should be measured in national land-use inventories for improving the estimation of country-level GHG fluxes for peatlands.     

Uterine involution in Finnish dairy cows

The effect of parity on the cervical and uterine involution was studied in 79 Finnish dairy cows on a research farm. The cows were examined clinically by rectal palpation 3 times a week during 8 weeks postpartum. The diameters of the cervix and uterine horns were estimated manually. The parous uterine horn was compared with the non-parous one. The results were separately analysed in primiparous cows (n = 18) and in those with the third calving (n = 61). A significant difference (p less than 0.001) between the parous and non-parous uterine horns was obtained until 21 days. Thereafter, involution still continued and equal diameters for the horns were not found until 5 weeks after parturition. A decline of the cervical diameter continued until 30 days after the delivery. The parity had no significant effect on the swiftness of uterine or cervical involution. However, in multiparous cows the cervical diameter remained larger than that in the primiparous animals still at 8 weeks postpartum.     

KIT-positive gastrointestinal stromal tumor in a 22-year-old male chimpanzee (Pan troglodites)

Gastrointestinal stromal tumors (GIST), KIT-positive and KIT signaling driven or platelet-derived growth factor receptor alpha (PDGFRA) signaling driven mesenchymal tumors, are poorly known in nonhuman primates. Availability of KIT- and PDGFRA-inhibitor drug imatinib mesylate has greatly raised the interest for these tumors. At necropsy of a 22-year-old male chimpanzee, a round, firm 2-cm intramural tumor was incidentally found in the midbody of the stomach and diagnosed as a GIST. Histologically, the mass was composed of spindle to polygonal epithelioid cells arranged in short to intermediate-length, interlacing streams, bundles, and nodular whorls often separated by hyalinized eosinophilic matrix. The mitotic rate was a maximum 1/50 high-power field. Immunohistochemically, the tumor cells were diffusely positive for KIT and CD34, focally positive for alpha-smooth muscle actin, and negative for muscle specific actin, desmin, S-100 protein, synaptophysin, and glial fibrillary acidic protein. Because the majority of human GISTs have gain-of-function KIT or PDGFRA mutations, genomic sequences of KIT exons 9, 11, 13, and 17 and PDGFRA exons 12 and 18 from this chimpanzee GIST were polymerase chain reaction amplified and sequenced. However, no mutation was identified in the analyzed "mutational hot spots." This study is the first extensive histomorphologic, immunohistochemical, and molecular genetic analysis of a chimpanzee GIST. More cases of nonhuman primate GISTs should be analyzed to discover the clinicopathologic spectrum of GISTs in these species.     

Application of optical coherence tomography enhances reproducibility of arthroscopic evaluation of equine joints

Background

Arthroscopy is widely used in various equine joints for diagnostic and surgical purposes. However, accuracy of defining the extent of cartilage lesions and reproducibility in grading of lesions are not optimal. Therefore, there is a need for new, more quantitative arthroscopic methods. Arthroscopic optical coherence tomography (OCT) imaging is a promising tool introduced for quantitative detection of cartilage degeneration and scoring of the severity of chondral lesions. The aim of this study was to evaluate the inter-investigator agreement and inter-method agreement in grading cartilage lesions by means of conventional arthroscopy and with OCT technique. For this aim, 41 cartilage lesions based on findings in conventional and OCT arthroscopy in 14 equine joints were imaged, blind coded and independently ICRS (International Cartilage Repair Society) scored by three surgeons and one PhD-student.

Results

The intra- and inter-investigator percentages of agreement by means of OCT (68.9% and 43.9%, respectively) were higher than those based on conventional arthroscopic imaging (56.7% and 31.7%, respectively). The intra-investigator Kappa coefficients were 0.709 and 0.565 for OCT and arthroscopy, respectively. Inter-investigator Kappa coefficients were 0.538 and 0.408 for OCT and arthroscopy, respectively.

Conclusions

OCT can enhance reproducibility of arthroscopic evaluation of equine joints.     

Degradation and development of peatlands in Peninsular Malaysia and in the islands of Sumatra and Borneo since 1990

In this study, we investigated the extent of peatland degradation and development in Peninsular Malaysia and in the islands of Sumatra and Borneo, in the western part of insular Southeast Asia, since 1990. Furthermore, carbon emissions caused by these land cover changes were estimated in order to evaluate their contribution to global climate change. High resolution Landsat (30 m spatial resolution) and Satellite Pour l'Observation de la Terre (SPOT; 10–20 m) satellite images were used to derive information on land cover in 1990 and 2008. Analysis of land cover changes since 1990 revealed remarkable reduction and degradation of peatswamp forest ecosystems. In less than 20 years, 5·1 Mha of the total 15·5 Mha of peatland had been deforested (11·6 Mha → 6·5 Mha; 75 per cent → 42 per cent) and the great majority of the remaining forests had been selectively logged. Simultaneously, area covered by unmanaged secondary growth ecosystems had doubled to nearly a quarter of all peatlands and industrial plantations had expanded dramatically (0·3 Mha → 2·3 Mha; 2 per cent → 15 per cent). It was conservatively estimated that these changes have caused minimum of 1·5 Gt carbon emissions into the atmosphere since 1990. Currently, peatlands of the study area emit at least 81 Mt of carbon (equivalent to 300 Mt of carbon dioxide) on annual basis due to mere peat decomposition. Thereby, it was concluded that peatland degradation and development in insular Southeast Asia during the past two decades have not only put the existence of Southeast Asian peatswamp forest ecosystems in danger but it has also caused globally significant carbon emissions and created a constant source of carbon dioxide. Copyright © 2010 John Wiley & Sons, Ltd.