Polyunsaturated Aldehydes from Large Phytoplankton of the Atlantic Ocean Surface (42°N to 33°S)

Polyunsaturated aldehydes (PUAs) are organic compounds mainly produced by diatoms, after cell wounding. These compounds are increasingly reported as teratogenic for species of grazers and deleterious for phytoplanktonic species, but there is still scarce information regarding concentration ranges and the composition of PUAs in the open ocean. In this study, we analyzed the spatial distribution and the type of aldehydes produced by the large-sized (>10 μm) phytoplankton in the Atlantic Ocean surface. Analyses were conducted on PUAs released after mechanical disruption of the phytoplankton cells, referred to here as potential PUAs (pPUAs). Results show the ubiquitous presence of pPUA in the open ocean, including upwelling areas, as well as oligotrophic gyres. Total pPUA concentrations ranged from zero to 4.18 pmol from cells in 1 L. Identified PUAs were heptadienal, octadienal and decadienal, with heptadienal being the most common (79% of total stations). PUA amount and composition across the Atlantic Ocean was mainly related to the nitrogen:phosphorus ratio, suggesting nutrient-driven mechanisms of PUA production. Extending the range of trophic conditions considered by adding data reported for productive coastal waters, we found a pattern of PUA variation in relation to trophic status.     

Metabolomic Tools for Secondary Metabolite Discovery from Marine Microbial Symbionts

Marine invertebrate-associated symbiotic bacteria produce a plethora of novel secondary metabolites which may be structurally unique with interesting pharmacological properties. Selection of strains usually relies on literature searching, genetic screening and bioactivity results, often without considering the chemical novelty and abundance of secondary metabolites being produced by the microorganism until the time-consuming bioassay-guided isolation stages. To fast track the selection process, metabolomic tools were used to aid strain selection by investigating differences in the chemical profiles of 77 bacterial extracts isolated from cold water marine invertebrates from Orkney, Scotland using liquid chromatography-high resolution mass spectrometry (LC-HRMS) and nuclear magnetic resonance (NMR) spectroscopy. Following mass spectrometric analysis and dereplication using an Excel macro developed in-house, principal component analysis (PCA) was employed to differentiate the bacterial strains based on their chemical profiles. NMR ¹H and correlation spectroscopy (COSY) were also employed to obtain a chemical fingerprint of each bacterial strain and to confirm the presence of functional groups and spin systems. These results were then combined with taxonomic identification and bioassay screening data to identify three bacterial strains, namely Bacillus sp. 4117, Rhodococcus sp. ZS402 and Vibrio splendidus strain LGP32, to prioritize for scale-up based on their chemically interesting secondary metabolomes, established through dereplication and interesting bioactivities, determined from bioassay screening.     

Milk Yield of Holstein Cows Induced into Lactation Twice Consecutively and Lactation Curve Models Fitted to Artiifcial Lactations

Nineteen multiparous barren Holstein cows were subjected to an induction of lactation protocol for 21 d administering estradiol cypionate （2 mg kg-1 of body weight （BW） d-1, on day 1 to 14）, progesterone （0.10 mg kg-1 of BW, on day 1 to 7）, lfumethasone （0.03 mg kg-1 of BW, on day 18 to 20） and recombinant bovine somatotropin （rbST;500 mg per cow, on day 1, 6, 16 and 21）. At the end of lactation and with a minimum of a 2-mon dry period, the same cows were again hormonally induced into lactation. Cows in both lactations were not artiifcially inseminated, they were milked 3 times daily and received rbST throughout lactation. Mean accumulated milk yield at 305 d in milk （DIM） did not differ between the ifrst and second induced lactations （（9 710 ＆#177;1 728） vs. （9 309＆#177;2 150） kg;mean＆#177;SD）. Total milk yield （（12 707＆#177;3 406） vs. （12 306＆#177;4 218） kg;mean＆#177;SD） and lactation length （（405＆#177;100） vs. （410＆#177;91） d;mean＆#177;SD） were not different between the ifrst and second induced lactations. In a second study, 15 empirical models including exponential, power law, yield-density, sigmoidal and miscellaneous models were compared for their suitability by modeling 12-mon （n=334）, 18-mon （n=164） and 29-mon （n=22） lactation cycles of Holsteins cows induced into lactation and treated with rbST throughout the lactation. Hoerl （Y=ab1/xxc）, Wood （Y=axb exp（cx）） and Dhanoa （Y=ax（bc）exp（cx）） models were equally suitable to describe 12-mon lactations. An exponential model with ifve parameters （Y=exp（a＋bx＋cd2＋e/x）） showed the best ift for milk yield for 18-mon lactations. The rational model （Y=a＋bx/1＋cx＋dx2） was found to produce the closest ift for 29-mon lactations. It was concluded that, with the protocol used in the present study, multiparous cows respond favorably to a second cycle of induced lactation, with milk yield similar to that experienced during the ifrst cycle. Thus, dairy producers might be able to lengthen the productive life of infertile high producing cows with a renewal of artiifcial lactation, which would imply an overall reduction in voluntary culling of cows. Also, various equations used to describe the lactation curves demonstrated the potential for iftting monthly milk records of Holstein cows with prolonged lactations and induced hormonally into lactation.     

Evaluating changes in switchgrass physiology,biomass, and light-use efficiency under artificial shade to estimate yields if intercropped with Pinus taeda L.

There is growing interest in using switchgrass (Panicum virgatum L.) as a biofuel intercrop in forestry systems. However, there are limited data on the longevity of intercropped bioenergy crops, particularly with respect to light availability as the overstory tree canopy matures. Therefore, we conducted a greenhouse study to determine the effects of shading on switchgrass growth. Four treatments, each with different photosynthetically active radiation (PAR) levels, were investigated inside the greenhouse: control (no shade cloth, 49 % of full sunlight), low (under 36 % shade cloth), medium (under 52 % shade cloth), and heavy shade (under 78 % shade cloth). We determined the effect of shading from March to October 2011 on individually potted, multi-tillered switchgrass transplants cut to a stubble height of 10 cm. In the greenhouse, there was a reduction in tiller number, tiller height, gas exchange rates (photosynthesis and stomatal conductance), leaf area, above- and belowground biomass and light-use efficiency with increasing shade. Total (above- and belowground) biomass in the control measured 374 ± 22 compared to 9 ± 2 g pot^?1 under heavy shade (11 % of full sunlight). Corresponding light-use efficiencies were 3.7 ± 0.2 and 1.4 ± 0.2 g MJ^?1, respectively. We also compared PAR levels and associated aboveground switchgrass biomass from inside the greenhouse to PAR levels in the inter-row regions of a range of loblolly pine (Pinus taeda L.) stands from across the southeastern United States (U.S.) to estimate when light may limit the growth of intercropped species under field conditions. Results from the light environment of loblolly pine plantations in the field suggest that switchgrass biomass will be significantly reduced at a loblolly pine leaf area index between 1.95 and 2.25, which occurs on average between ages 6 and 8 years across the U.S. Southeast in intensively managed pine plantations. These leaf area indices correspond to a 60–65 % reduction in PAR from open sky.     

On the magnitude and dynamics of eddy covariance system residual energy (energy balance closure error) in subsurface drip-irrigated maize field during growing and non-growing (dormant) seasons

We investigated the magnitude and dynamics of the eddy covariance system (ECS) residual energy (energy balance closure error) for a subsurface drip-irrigated maize (Zea mays L.) field in 2005 and 2006 growing and non-growing (dormant) seasons. The corrections for coordinate rotation, oxygen, frequency, and Webb–Pearman–Leuning corrections improved the slope of the total convective energy (latent heat + sensible heat) with respect to the net available energy (from 0.68 to 0.84), but the data filtering (for horizontal and frictional wind speeds higher than 2 m s^?1 and lower than 0.2 m s^?1) had little effect on the slope. Also, the number of data points available for the analyses was reduced by 53 % after filtering. Overall, the daytime residual energy varied between ?100 and 200 W m^?2 during the dormant seasons and between ?500 and 600 W m^?2 during the growing seasons. Most of the nighttime residual energy ranged within ±40 W m^?2 during the calendar year in 2005 and within ?60 and 20 W m^?2 in 2006. During nighttime, the total convective energy is vertically distributed with respect to (R _n ? G), indicating that the total convective energy is independent of the variations in (R _n ? G). Secondly, it was observed that nighttime residual energy did not show any seasonal variation patterns throughout the two consecutive years and confined mostly within a narrow range of ±40 W m^?2, showing no dependency on seasonal changes in surface conditions. The maximum variation in residual energy was usually around frictional wind speed of 0.3–0.5 m s^?1 (varying between ?150 and 300 W m^?2) and then decreasing to a range of ±100 W m^?2 at higher frictional wind speeds. On average, the residual energy decreased by about 33 W m^?2 (after the intercept) for every 1.0 m s^?1 increase in frictional wind speed, whereas the residual energy decreased by about 4 W m^?2 (after the intercept) for every 1.0 m s^?1 increase in horizontal wind speed. Similar diurnal residual energy distribution patterns, with different magnitudes, were observed during growing and dormant seasons. Even though a slight decrease in residual energy was observed with increase in leaf area index (LAI) in both growing seasons, LAI did not have considerable influence on the seasonal variation in the residual energy. The residual energy was also evaluated by separating the data into morning and afternoon hours. We observed that the root-mean-squared difference value is slightly greater for the morning data than the afternoon, indicating greater residual energy in the morning hours due to weaker turbulent mixing than the afternoon. Overall, significant reduction in the available evapotranspiration data after applying a series of corrections possess challenges in terms of utilization of ECS for in-season irrigation management and crop water requirement determinations that needs to be further researched and addressed.     

In Situ Heavy Metal Accumulation in Lettuce Growing Near a Former Mining Waste Disposal Area: Implications for Agricultural Management

Mining wastes may pose risk nearby urban and agricultural areas. We investigated a lettuce crop land close to a former capped mine tailing in order to determinate the metal uptake by crops. Soil plot sampling design within the crop area and two transects along the tailing were performed. In addition, lettuces (root and leaves) were analyzed after transplant and harvest. The results showed a pH of around 7–8 for all the soil samples. Total metal concentrations were as follows: 190–510 mg kg^?1 Pb, 13–21 mg kg^?1 Cu, and 210–910 mg kg^?1 Zn. Diethylene triamine pentaacetic acid-extractable Pb was around 18% of the total Pb in some samples. Transects along the base and on the plateau of the tailing showed high metal concentrations of Pb (up to 5,800 mg kg^?1) and Zn (up to 4,500 mg kg^?1), indicating that capping layer had been eroded. Lettuce leaves showed Pb concentrations within standard for human health (<0.3 mg kg^?1 in fresh weight). For essential micronutrients such as Cu and Zn, leaves had optimal content (10–28 mg kg^?1 Cu, 60–85 mg kg^?1 Zn). A continued monitoring in metal uptake is needed in crop lands close to mining wastes in order to prevent risks in food safety. Capped tailings must be monitored and rehabilitation works performed from time to time.     

Genetic diversity in the parental lines and heterosis of the tropical rice hybrids

Genetic diversity within and between the maintainer (B) and restorer (R) lines used in hybrid breeding programs of the Philippine was investigated with information from analysis of pedigree record, quantitative traits and SSR assays. Mean coefficients of coancestry were calculated as 0.11 within R lines, 0.27 within B lines, and 0.04 between R and B lines, indicating greater diversity among R lines than among B lines, and the significant divergence between B and R lines. These results are consistent with those obtained from quantitative trait analysis and SSR marker assays. Relative gene diversity for 37 random SSR markers averaged 0.20 within B lines,0.28 within R lines, and 0.52 between two groups of lines. There were no consistent associations among various genetic diversity measures. Random sets of SSR marker and pedigree based diversity measures had no significant correlation with mid-parent heterosis for grain yield and biomass, indicating that prediction of heterosis for complex traits based on these two genetic diversity estimates is difficult. This revised version was published online in August 2006 with corrections to the Cover Date.