Phylogenetic analysis of Foot-and-Mouth Disease Virus type O circulating in the Andean region of South America during 2002-2008

At present, Foot-and-Mouth Disease (FMD) has been successfully controlled in most territories of South America, where only Ecuador and Venezuela remain as endemic countries. In this context, the precise characterization of circulating viruses is of utmost importance. This work describes the first molecular epidemiology study performed with the complete VP(1)-coding region of 114 field isolates of FMD virus (FMDV) type O, collected in the Andean countries mainly during 2002-2008. Sequences were aligned and compared to isolates responsible for emergencies in the Southern Cone of the continent between the years 2000 and 2006, and to other representative type O viruses worldwide. The results showed that FMD type O viruses isolated in South America and analyzed up to date are placed in 11 different lineages within the Euro SA topotype. Five of these lineages included viruses circulating in Ecuador and Venezuela during 2002-2008. The last emergencies reported in already-free areas in the Andean region, showed close relationships with viruses circulating in these endemic countries. Andean lineages showed a clear separation from the unique lineage containing viruses responsible for the emergencies in the Southern Cone, reflecting the different livestock circuits and providing evidence that support the ecosystem dynamics in the region. A wide geographical dissemination of the same strain in short time intervals has been observed, pointing to animal movements as the most significant risk parameter. This fact, together with an important generation of viral variants in areas under weak control strategies, reinforce the need of stronger official controls, as well as for establishing multinational cooperative measures in the border areas.     

Analysis of cellular responses to Mycoplasma mycoides subsp. mycoides small colony biotype associated with control of contagious bovine pleuropneumonia

A better understanding of protective immune memory against contagious bovine pleuropneumonia (CBPP) is needed in order to facilitate the development of safer vaccines based on selected components of the pathogen. For this purpose, cells collected from lymph nodes draining the lungs of Mycoplasma mycoides subsp. mycoides small colony biotype (MmmSC)-infected cattle were stimulated with the pathogen in vitro and evaluated concurrently for proliferation (CFSE based method), expression of activation, memory markers and cytokine production. Direct evidence is presented for a major contribution of CD4+ T cells to the vigorous proliferative and T1 biased cytokine recall responses observed in cattle that have recovered from infection but not in animals developing the acute form of the disease. Two different phenotypes of MmmSC-specific memory CD4 were observed based on CD62L expression and proliferative capacities. Furthermore, recall proliferation of B cells also occurred but was strictly dependent on the presence of CD4. The information provided in this study will facilitate the search for MmmSC antigens that have potential for the development of subunit vaccines against CBPP.     

Avian regulation of crop and forest pests,a meta-analysis

BACKGROUND

Birds have been shown to reduce pest effects on various ecosystem types. This study aimed to synthesize the effect of birds on pest abundance, product damage and yield in agricultural and forest systems in different environments. Our hypothesis is that birds are effective pest regulators that contribute to a reduction in pest abundance, enhancement of yield quality and quantity and economic profit, and that pest regulation may depend on moderators such as the type of ecosystem, climate, pest, and indicator (ecological or economic).

RESULTS

We performed a systematic literature review of experimental and observational studies related to biological control in the presence and absence of regulatory birds. We retained 449 observations from 104 primary studies that were evaluated through qualitative and quantitative analyses. Of the 79 studies with known effects of birds on pest regulation, nearly half of the 334 observations showed positive effects (49%), 46% showed neutral effects, and very few (5%) showed negative effects. Overall effect sizes were positive (mean Hedges’ d = 0.38 ± 0.06). A multiple model selection retained only ecosystem and indicator types as significant moderators.

CONCLUSION

Our results support our hypothesis that there is a positive effect of avian control of pests for each analyzed moderator and this effect was significant for both ecological and economic indicators. Avian regulation of pests is a potential effective approach for environmentally friendly pest management that can reduce pesticide use regardless of the context of implementation. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

A novel approach for the detection of potentially hazardous pepsin stable hazelnut proteins as contaminants in chocolate-based food

Contamination of food products with pepsin resistant allergens is generally believed to be a serious threat to patients with severe food allergy. A sandwich type enzyme-linked immunosorbent assay (ELISA) was developed to measure pepsin resistant hazelnut protein in food products. Capturing and detecting rabbit antibodies were raised against pepsin-digested hazelnut and untreated hazelnut protein, respectively. The assay showed a detection limit of 0.7 ng/mL hazelnut protein or <1 microg hazelnut in 1 g food matrix and a maximum of 0.034% cross-reactivity (peanut). Chocolate samples spiked with 0.5-100 microg hazelnut/g chocolate showed a mean recovery of 97.3%. In 9/12 food products labeled "may contain nuts", hazelnut was detected between 1.2 and 417 microg hazelnut/g food. It can be concluded that the application of antibodies directed to pepsin-digested food extracts in ELISA can facilitate specific detection of stable proteins that have the highest potential of inducing severe food anaphylaxis.     

The value of primary, secondary and plantation forests for Amazonian birds

Secondary forests and exotic tree plantations are rapidly expanding across tropical landscapes, yet we currently have a very poor understanding of the value of these human-dominated forest landscapes for biodiversity conservation. Mist netting, point counts and transect walks were used to compare the bird communities of these habitats and neighboring primary forest in north-east Brazilian Amazonia. The extensive spatial scale of plantations and second-growth in our study area enabled us to implement a robust replicated design, with survey plots approximately two to three orders of magnitude larger than most previous studies of land-use change in the tropics, thus minimising the influence of the surrounding landscape. Species richness was highest in primary forest and lowest in Eucalyptus plantations, and community turnover between habitats was very high whether based upon matrices of relative abundance or species presence-absence data, and for both point count and mist net data. Monthly line-transect censuses conducted over an annual cycle showed an increase in the detection of canopy frugivores and seed predators during the peak of flower and fruit availability in primary forest, but failed to suggest that second-growth or Eucalyptus stands provide suitable foraging habitat at any time of the year. The conservation value of both secondary forest and plantations was low compared to conclusions from previous studies. Our results indicate that while large-scale reforestation of degraded land can increase regional levels of diversity, it is unlikely to conserve most primary forest species, such as understorey insectivores and canopy frugivores.     

Colletotrichum species causing anthracnose on avocado fruit in Mexico: Current status

Colletotrichum species cause anthracnose disease in tropical and subtropical fruit crops worldwide. Mexico is the main producer and exporter of avocado (Persea americana) globally and has yearly outbreaks of anthracnose on this crop. However, which specific Colletotrichum spp. cause these outbreaks in avocado-producing regions remain uncertain; thus, the objective of the present study was to identify the species responsible. A survey performed in six production regions of Mexico yielded 232 isolates, from which a subset of 104 strains was selected based on morphological characteristics and origin. This subset was sequenced and haplotypes were analysed in the gapdh partial gene. Finally, 31 strains were identified through multilocus phylogenetic analyses using the sequences of the internal transcribed spacer region and six loci. This study revealed the presence of two species previously reported in Mexico (C. karsti and C. godetiae), three novel records in Mexico (C. siamense, C. fioriniae, and C. cigarro), four novel records on avocado (C. chrysophilum, C. jiangxiense, C. tropicale, and C. nymphaeae), and two novel lineages (Colletotrichum sp. 1 and Colletotrichum sp. 2). C. siamense was the most prevalent, while the species reported for the first time on avocado, including the novel lineages, were the least prevalent. C. karsti was the most widespread (four regions), followed by C. siamense, C. jiangxiense, and C. chrysophilum (three regions). Pathogenicity tests showed that all species caused anthracnose on avocado fruit. These findings will be useful for improving the management of avocado anthracnose outbreaks in Mexico.     

High-Resolution Aerial Imaging Based Estimation of Crop Emergence in Potatoes

Plant emergence and stand establishment are key indicators of early crop development that are routinely assessed in potato agronomy and crop improvement research. The standard method for evaluating emergence is through manual plant counts at regular intervals. In this proof-of-concept study, unmanned aerial vehicles integrated with multispectral imaging were used for high-throughput evaluation of crop emergence under field conditions. High-resolution aerial imaging was performed at 15 m above ground level to capture data from potato plots of two varieties (‘Alturas’ and ‘Payette Russet’) in which the seed had been treated with different concentrations of growth regulators (including non-treated controls). The treatments resulted in differences in plant emergence and establishment. The images were collected at 32, 37, and 43 days after planting (DAP). Image-based features such as plant count, SUM-NDVI, and SUM-BINARY were computed from normalized difference vegetation index (NDVI) images for each treatment plot using ArcGIS^®. The Pearson’s correlation coefficients (r) were significant (p < 0.05) between image-based plant counts (r = 0.82) and SUM-NDVI (r = 0.62-0.73) with that of manual plant counts for both varieties, especially at early growth stages (32 DAP) when differences in emergence among treatments were more pronounced. The treatment effects on plant emergence and establishment were effectively resolved in the aerial multispectral images. Selection of the pertinent polygon threshold area to eliminate noise in delineating individual plants during image processing was important for resolution of treatment effects. The data shows that the technique can be applied in potato establishment evaluation.     

A proposal for aluminum tolerance selection in white oat under hydroponic conditions

White oat genotypes were subjected to Al stress in hydroponic conditions in order to verify the viability of methods based on minimum nutrient solution (MNS) in comparison to complete nutrient solution (CNS), commonly used in the characterization and selection for Al tolerance in this species. The experimental design was completely randomized blocks with three replicates composed of 10 seedlings each. Six white oat genotypes subjected to different Al levels in minimum (0, 3, 6, and 9 mg L⁻¹) and complete (0, 10, 20, and 30 mg L⁻¹) solutions were evaluated. In this evaluation, the MNS was efficient in identifying aluminum-tolerant, white oat genotypes under hydroponics. The root growth resumption showed to be the most effective trait in the aluminum-tolerant plant selection. At concentrations equal to or higher than 3 mg Al L⁻¹ in minimum and 10 mg Al L⁻¹ in complete solution, severe damage caused by the toxic element on root development was verified. The white oat cultivars UFRGS 14, ALBASUL, and BARBARASUL showed aluminum tolerance in the tested conditions.     

Correction to: When is it biological control? A framework of definitions,mechanisms, and classifications

Journal of Pest Science - A correction to this paper has been published: https://doi.org/10.1007/s10340-021-01386-z     

Protein changes in the albedo of citrus fruits on postharvesting storage

In this work, major protein changes in the albedo of the fruit peel of Murcott tangor (tangerine x sweet orange) during postharvest ageing were studied through 2D PAGE. Protein content in matured on-tree fruits and in fruits stored in nonstressing [99% relative humidity (RH) and 25 degrees C], cold (99% RH and 4 degrees C), and drought (60% RH and 25 degrees C) conditions was initially determined. Protein identification through MS/MS determinations revealed in all samples analyzed the occurrence of manganese superoxide dismutase (Mn SOD), actin, ATP synthase beta subunit (ATPase), citrus salt-stress associated protein (CitSap), ascorbate peroxidase (APX), translationally controlled tumor protein (TCTP), and a cysteine proteinase (CP) of the papain family. The latter protein was identified in two different gel spots, with different molecular mass, suggesting the simultaneous presence of the proteinase precursor and its active form. While Mn SOD, actin, ATPase, and CitSap were unchanged in the assayed conditions, TCTP and APX were downregulated during the postharvest ageing process. Ageing-induced APX repression was also reversed by drought. CP contents in albedo, which were similar in on- and off-tree fruits, were strongly dependent upon cold storage. The active/total CP protein ratio significantly increased after cold exposure. This proteomic survey indicates that major changes in protein content in the albedo of the peel of postharvest stored citrus fruits are apparently related to the activation of programmed cell death (PCD).