Point transect sampling of deadwood: a comparison with well-established sampling techniques for the estimation of volume and carbon storage in managed forests

In managed forests, the occurrence of deadwood (DW) can be regarded as a stochastically rare event with strong clumping and high local variability (Meyer in Forstwissenschaftliches Centralblatt 118:167–180, 1999). Traditional sampling techniques, such as Fixed Area Sampling, Angle Count Sampling and Line Intersect Sampling, do not regard this fact and may be inefficient for surveys of DW, because of limited search areas. A sampling technique that should remedy this shortcoming is Point Transect Sampling (Buckland et?al. in Introduction to distance sampling: estimating abundance of biological populations. Oxford University Press, Oxford, 2001; Advanced distance sampling: estimating abundance of biological populations. Oxford University Press, Oxford, 2004), where as a matter of principle, all objects that are sighted from a fixed location are counted. We compare Point Transect Sampling with the other well-established sampling approaches for the estimation of volume, necromass and carbon storage in terms of precision and sampling effort. It is shown that Point Transect Sampling is the superior method for sampling standing DW regarding efficiency, whereas for sampling downed DW, it is clearly outperformed by Line Intersect Sampling.     

Revealing the angular symmetry of chemical bonds by atomic force microscopy

We have measured the angular dependence of chemical bonding forces between a carbon monoxide molecule that is adsorbed to a copper surface and the terminal atom of the metallic tip of a combined scanning tunneling microscope and atomic force microscope. We provide tomographic maps of force and current as a function of distance that revealed the emergence of strongly directional chemical bonds as tip and sample approach. The force maps show pronounced single, dual, or triple minima depending on the orientation of the tip atom, whereas tunneling current maps showed a single minimum for all three tip conditions. We introduce an angular dependent model for the bonding energy that maps the observed experimental data for all observed orientations and distances.     

Bergmann glial AMPA receptors are required for fine motor coordination

The impact of glial neurotransmitter receptors in vivo is still elusive. In the cerebellum, Bergmann glial (BG) cells express α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)-type glutamate receptors (AMPARs) composed exclusively of GluA1 and/or GluA4 subunits. With the use of conditional gene inactivation, we found that the majority of cerebellar GluA1/A4-type AMPARs are expressed in BG cells. In young mice, deletion of BG AMPARs resulted in retraction of glial appendages from Purkinje cell (PC) synapses, increased amplitude and duration of evoked PC currents, and a delayed formation of glutamatergic synapses. In adult mice, AMPAR inactivation also caused retraction of glial processes. The physiological and structural changes were accompanied by behavioral impairments in fine motor coordination. Thus, BG AMPARs are essential to optimize synaptic integration and cerebellar output function throughout life.     

Tritrichomonas foetus isolates from cats and cattle show minor genetic differences in unrelated loci ITS-2 and EF-1α

The protozoan parasite Tritrichomonas foetus is well known as an important causative agent of infertility and abortion in cattle (bovine trichomonosis). This World Organisation for Animal Health (O.I.E.) notifiable disease is thought to be under control in many countries including Switzerland. In recent studies, however, T. foetus has also been identified as an intestinal parasite that causes chronic large-bowel diarrhoea in cats. Since the feline isolates were considered indistinguishable from bovine isolates, the possibility and risk of parasite transmission from cats to cattle and vice versa has been intensively discussed in current literature. Therefore, we investigated if cat and cattle isolates are genetically distinct from each other or in fact represent identical genotypes. For this purpose, two independent genetic loci were selected that turned out to be well-suited for a PCR sequencing-based genotyping of trichomonad isolates: (i) previously published internal transcribed spacer region 2 (ITS-2) and (ii) a semi-conserved sequence stretch of the elongation factor-1 alpha (EF-1α) gene used for the first time in the present study. Respective comparative analyses revealed that both loci were sufficiently variable to allow unambiguous genetic discrimination between different trichomonad species. Comparison of both genetic loci confirmed that T. suis and T. mobilensis are phylogenetically very close to T. foetus. Moreover, these two genetic markers were suited to define host-specific genotypes of T. foetus. Both loci showed single base differences between cat and cattle isolates but showed full sequence identity within strains from either cat or cattle isolates. Furthermore, an additional PCR with a forward primer designed to specifically amplify the bovine sequence of EF-1α was able to discriminate bovine isolates of T. foetus from feline isolates and also from other trichomonads. The implications these minor genetic differences may have on the biological properties of the distinct isolates remain to be investigated.     

Application of Wavelet Filtering to Analyze Acceleration-Time Curves of Horses Trotted on Different Surfaces

The objective of the present study was to illustrate the possibilities of wavelet filtering to denoise hoof-acceleration data measured on different surfaces. Further, three variables from the time-domain acceleration signal and two variables from the single-sided amplitude spectrum of the Fourier-transformed signal were statistically analyzed to detect the differences between the riding surfaces as well as to compare the results of the different variables. For data recording, six Warmblood horses were trotted on five different riding surfaces. The recorded acceleration data were smoothed by wavelet filtering on three levels by using the Haar wavelet as well as the fourth-order Daubechies wavelet. The hoof’s landing phase was extracted from the acceleration signal by a special algorithm and analyzed because of to its significance with regard to the injury risk of a horse. More accurate hoof’s landing phases could be detected by the algorithm in the first and second approximations of both wavelet-filtered signals than in the original signal. The dissected hoof’s landing phases were used to calculate the aforementioned variables. The statistical analysis showed similar results within the variables of the time-domain signal and within the variables of the single-sided amplitude spectrum. The least square means of the original signal and the first and second approximation of both wavelet-filtered signals were on a similar level. In conclusion, it was shown that wavelet filtering is a suitable method to denoise acceleration-time curves. Further, the results of the five variables showed that the insertion of time- and frequency-domain variables was significant in the analysis of the acceleration data.     

Value of the clinical examination in diagnosing enzootic pneumonia in fattening pigs

The diagnosis of enzootic pneumonia at the herd level should be based on a combination of different methods. Currently, clinical examination is usually considered to be a low value method, particularly compared to the direct detection of Mycoplasma hyopneumoniae in lung lesions by PCR. The present study compared the value of accurate clinical examination (including the quantitation of coughing), PCR on bronchoalveolar lavage fluid, and serological testing of blood samples for the purpose of diagnosing enzootic pneumonia. The coughing index (average % of pigs coughing per minute of observation) was determined in fattening pigs from 59 herds, and ranged from 0% to 6.7% with a median of 2.4%. Five hundred and ninety bronchiolar lavage samples and 1179 serum samples were taken from pigs in those 59 herds and tested for M. hyopneumoniae specific DNA and antibodies, respectively. In herds where ?50% of lavage fluids were PCR positive, the likelihood of a higher coughing index was increased by 76% (OR: 1.76; 95% CI: 1.14-2.72) compared to herds with <50% of positive samples. For antibodies (determined by ELISA) a seroprevalence of ?50% increased the likelihood of a high coughing index by 50% (OR: 1.50; 95% CI: 1.03-2.20). In 78.1% of all herds with a seroprevalence of ?50% against M. hyopneumoniae, the PCR-prevalence and the coughing index were above the median (50% and 2.4%, respectively). It was concluded that in fattening pigs a quantitative assessment of the onset of coughing - typically dry and non-productive - improves the diagnosis of enzootic pneumonia and can occasionally substitute for the detection of M. hyopneumoniae by PCR.     

Functional and antigenic properties of GlpO from Mycoplasma mycoides subsp. mycoides SC: characterization of a flavin adenine dinucleotide-binding site deletion mutant

L-α-glycerophosphate oxidase (GlpO) plays a central role in virulence of Mycoplasma mycoides subsp. mycoides SC, a severe bacterial pathogen causing contagious bovine pleuropneumonia (CBPP). It is involved in production and translocation of toxic H₂O₂ into the host cell, causing inflammation and cell death. The binding site on GlpO for the cofactor flavin adenine dinucleotide (FAD) has been identified as Gly ₁₂−Gly₁₃−Gly ₁₄−Ile₁₅−Ile₁₆−Gly ₁₇. Recombinant GlpO lacking these six amino acids (GlpOΔFAD) was unable to bind FAD and was also devoid of glycerophosphate oxidase activity, in contrast to non-modified recombinant GlpO that binds FAD and is enzymatically active. Polyclonal monospecific antibodies directed against GlpOΔFAD, similarly to anti-GlpO antibodies, neutralised H₂O₂ production of M. mycoides subsp. mycoides SC grown in the presence of glycerol, as well as cytotoxicity towards embryonic calf nasal epithelial (ECaNEp) cells. The FAD-binding site of GlpO is therefore suggested as a valuable target site for the future construction of deletion mutants to yield attenuated live vaccines of M. mycoides subsp. mycoides SC necessary to efficiently combat CBPP.     

Effects of Thymus vulgaris L. as feed additive in piglets and against haemolytic E. coli in vitro

The aim of the study was to test Thymi herba (1.66% v/w essential oil with 39% p-cymene and 32% thymol) in the rearing period of piglets as feed additive. Therefore, two feeding trials were performed with piglet groups ranging from 17 to 22 animals each. Either 10 g of Thymi herba/kg feed (Thymi herba group), 10 mg flavophospholipol/kg feed (flavophospholipol group) or nothing (control group) was added to the animals' feed. No significant differences in the performance parameter daily weight gain among any groups were recorded. No differences concerning feed efficiency or isolation of haemolytic E. coli serotypes were shown. In addition, the antibacterial activity of the essential oil of Thymi herba against 39 haemolytic E. coli isolates from the same weaners was investigated in vitro by disk diffusion, minimum inhibitory concentration and bactericidal concentration testing. In contrast to the feeding results, the essential oil of the thyme batch fed showed antibacterial activity against all haemolytic E. coli investigated. This interesting antibacterial potential of Thymi herba prompts further investigations as to its value as feed additive.     

Prevalence and distribution of the insertion element ISMag1 in Mycoplasma agalactiae

In characterising Mycoplasma agalactiae strains from various European countries and from Africa, a new insertion sequence (IS), ISMag1, which is related to IS of the family of IS30 insertion elements, has been identified by DNA sequence analysis and Southern blot hybridisation. ISMag1 has a size of 1515bp, and contains inverted repeats of 3bp and a gene encoding the putative transposase on a single open reading frame. ISMag1 is present only in the rarely isolated serotypes E, F, G and H of M. agalactiae, where it is found in 1 to approximately 30 copies. The different patterns obtained by hybridisation of a labelled probe of ISMag1 to genomic DNA cut with various restriction enzymes correlate to some extent to the different serotypes and to variations of the nucleotide sequences of the uvrC genes of the different strains. Based on uvrC sequences, the strains of M. agalactiae carrying ISMag1 form a cluster, separate from the other strains. IS patterns obtained with ISMag1 allow a fine subtyping of the serotypes E, F, G and H of M. agalactiae for epidemiological studies. The potential role of ISMag1 and of its copy numbers on virulence and persistence of the respective strains requests further studies.     

Besteht das Risiko der Verschleppung der Bakteriellen Ringfäule der Kartoffel durch den Krautschläger?

In 2001 and 2002, two field trials were performed by the Plant Protection Service (PPS) of the Landwirtschaftskammer Weser-Ems in Oldenburg and the Institute for Plant Protection of the Bavarian State Research Center for Agriculture (LfL) in Freising respectively to examine the transmission of the bacterial ring rot pathogen of potato (Clavibacter michiganensis ssp. sepedonicus) by haulm cutting. In the experiment conducted by the PPS in Oldenburg a lawn-trimmer was used to simulate haulm cutting, before a bacterial suspension was sprayed on the ends of the cut haulms. Two cultivars (early and late) were tested and also the effect of an additional chemical measure for haulm destruction on the transmission of the pathogen was determined. In the trial performed at the LfL in Freising plots with infected plants for the contamination of the haulm cutter were treated immediately prior to plots with healthy plants. Infections of stems (re-growth) and tubers of the plants were determined by polymerase chain reaction (PCR) and indirect immunofluorescence antibody staining (IFAS). In the trials conducted with the haulm cutter, ring rot could be detected in the re-growth of 60% of the plants derived from healthy tubers 4 weeks after haulm cutting. It was confirmed in a bioassay, that the isolated pathogens were viable and virulent. Although the ring rot pathogen was transmitted to a great extent to the leaf material, no infection of progeny tubers occurred in a total of 450 tested plants. However in general a migration of the transmitted pathogen to the tubers cannot be excluded. Therefore further on it is advisable to clean and disinfect the haulm cutter before each use.