A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

The high degree of similarity between the mouse and human genomes is demonstrated through analysis of the sequence of mouse chromosome 16 (Mmu 16), which was obtained as part of a whole-genome shotgun assembly of the mouse genome. The mouse genome is about 10% smaller than the human genome, owing to a lower repetitive DNA content. Comparison of the structure and protein-coding potential of Mmu 16 with that of the homologous segments of the human genome identifies regions of conserved synteny with human chromosomes (Hsa) 3, 8, 12, 16, 21, and 22. Gene content and order are highly conserved between Mmu 16 and the syntenic blocks of the human genome. Of the 731 predicted genes on Mmu 16, 509 align with orthologs on the corresponding portions of the human genome, 44 are likely paralogous to these genes, and 164 genes have homologs elsewhere in the human genome; there are 14 genes for which we could find no human counterpart.     

Yield characteristics and morphometric relationships of giant freshwater prawn,Macrobrachium rosenbergii (de Man, 1879)

Meat yield of 233 individuals of giant freshwater prawn, Macrobrachium rosenbergii (de Man, 1879), and their morphometric relationships were examined. Morphometric parameters of different length and weight measurements were recorded for both the sexes separately and subjected to analysis. The meat yield of prawns was size and sex dependent with females showing significantly greater (P < 0.05) tail meat yield than males. The tail meat as a body weight percentage ranges from 26.12 to 40.75 and 32.97 to 42.11 in males and females, respectively. Much of the differences in yield are related to the size and weight of the head and claws. The head weight of males was observed to be higher compared to females in all the size classes. Regression slopes of total length versus body weight and total length versus head weight were significantly higher than critical isometric value indicating high positive allometric growth in both the sexes, with males showing significantly higher (P < 0.05) slope than females. The relationship parameters of total length versus tail weight and total length versus tail meat showed a positive allometric growth in females, whereas it is isometry and negative allometry in males. The morphometric relationship of tail length versus all weight measurements showed positive allometry and negative allometry in females and males, respectively.     

A kinematic wave based watershed model for soil erosion and sediment yield

In this study, a finite element method based soil erosion and sediment yield model has been developed for overland and stream flow. The one dimensional conservation of mass of sediment flow equation has been solved based on kinematic wave flow approximation and Galerkin's based numerical solution. Various thematic maps required for the model are prepared using Geographical Information System (GIS). Land use/Land cover is extracted from remotely sensed data. The proposed finite element based distributed model has been used for the estimation of soil erosion and sediment outflow by discretizing the watershed into small grids. The soil erosion and sediment outflow model has been developed and applied to Khadakohol watershed located in Nashik district of Maharastra state, India. Part of the available data has been used for the model calibration and the other part for model validation. The simulated results of the watershed have been compared with the observed data and found to be satisfactory.     

Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa × O. nivara

Introgression lines(ILs)derived from interspecific crosses are a source of new genetic variability.A total of 55 ILs derived from two crosses Swarna×O.nivara IRGC81848(population A)and Swarna×O.nivara IRGC81832(population B)were characterized for yield and yield-related traits/QTLs.Segregation of 103 simple sequence repeat(SSR)markers associated with yield-related QTLs was studied.Population A showed an average of 12.6%homozygous O.nivara alleles and population B showed 10.6%.Interestingly,three SSR markers,RM223,RM128 and RM517,showed conspicuous pattern of segregation.The distribution of parental alleles at three loci RM223,RM128 and RM517 linked to yield-related traits was unique.These markers flanked to several yield-related QTLs.RM223,flanking to qyld8.3,was heterozygous in almost all the 55 ILs except in IL10-3S and IL131S.RM128 on chromosome 1 and RM517 on chromosome 3 were mutually exclusive in 46 out of 55 ILs.These 46 ILs showed either of the marker allele RM128 or RM517 from O.nivara but not both.IL166S had both RM128and RM517 from O.nivara and the other ILs showed homozygous Swarna allele at RM517 except IL65S.Population structure assigned the 55 ILs to three sub-populations based on their genomic diversity.IL65S,IL166S,IL248S,IL7K and IL250K showed high yields in multi-location trials,and IL248S was released for cultivation as DRRDhan 40.     

Rates of decomposition and nutrient mineralization of leaf litter from different orchards under hot and dry sub-humid climate

Leaf litter decomposition is a critical step in nutrient cycling and providing nutrients to plants. Decomposition of dry matter, lignin, ligno-cellulose, cellulose and polyphenols was investigated in relation to nitrogen (N), phosphorus (P) and potassium (K) dynamics in leaf litter of mango, guava and litchi orchards under hot and dry sub-humid climate. Leaf litter of mango and guava decomposed more rapidly than that of litchi with decay constants of 3.22, 1.33 and 0.62 yr^-1, respectively. The leaf litter organic substances like polyphenol lost more rapidly followed by cellulose, lignin and ligno-cellulose throughout the period of decomposition. The N was released faster both in mango and guava with decay constant of 4.06 and 2.11 yr^-1, respectively. The release of K was faster in mango followed by guava and litchi with decay constant of 4.66, 3.18 and 1.63 yr^-1, respectively. The leaf litter decomposition was significantly positively correlated with soil fungal and bacterial biomass, rainfall and air temperature, while the leaf chemistry showed significant negative correlations in all the orchards. The results demonstrated that mango leaf litter was found to be the best followed by guava, and litchi in terms of N, P, and K return in less period of time.     

Moderate protective effect of 6-MFA, a microbial metabolite obtained from Aspergillus ochraceus on immunological liver injury in mice

Hepatoprotective effect of 6-MFA, obtained from fungus Aspergillus ochraceus ATCC 28706, was evaluated by employing three different immunological liver injury mice models. The first liver injury model was induced by injecting anti-basic liver protein (BLP) antibody into mice previously immunised with rabbit IgG (RGG). The other models were simulated by injecting antiliver specific protein (LSP) antibody or by injecting bacterial lipopolysaccharide (LPS) into mice pretreated with Corynebacterium parvum (C. parvum). 6-MFA treatment inhibited the increased transaminases (GOT and GPT) activities and showed a tendency to inhibit the histopathological changes of the liver in all the models studied. Furthermore, 6-MFA treatment inhibited deoxycholic acid induced transaminase release from cultured rat hepatocytes in vitro, but failed to affect the formation of hemolytic plaque forming cells in immunised mice spleens and hemolytic activity of guinea pig complement in immunohemolytic reaction. Our findings, therefore, suggested that the moderate hepatoprotective effect of 6-MFA could be related to it's protective effect on hepatocyte plasma membrane rather than the direct inhibitory effects on the antibody formation and/or complement activity.     

Assessment of morphological and genetic diversity in <Emphasis Type="Italic">Gmelina arborea</Emphasis> Roxb.

Gmelina arborea is an important timber-yielding tree that grows naturally in the tropical and subtropical regions of Southeast Asia and has also been introduced as a plantation species outside these regions. Genetic diversity in this tree species was observed in stone/seed-related traits and in vitro responses of cultured nodal segments from plants of eight different populations representing natural forests, fragmented forests and plantations. Variance analysis showed significant differences between populations for these traits. However, it was not possible to separate the different populations using these traits by multivariate analysis, even after environmental variation was reduced over six subcultures. Genetic diversity was therefore analysed using molecular markers. Inter-simple sequence repeat (ISSR) primers yielded 95% polymorphic loci among the eight populations and UPGMA analysis enabled separation of these populations on the basis of their genetic distances. Diversity was also analyzed using population genetics parameters like Nei’s genetic diversity and gene differentiation. Nei’s genetic diversity was 0.29 between populations and 0.11 within populations. AMOVA analysis indicated 41 and 59% within- and between-population genetic diversity, respectively. Mantel test suggested that genetic differentiation between six Indian populations was positively correlated to geographic distance (r = 0.626, P = 0.029). Assessment of the genetic variation in G. arborea populations is an important step in selection of conservation strategies for this species since diversity forms the basis for species adaptation.     

Association of Meloidogyne incognita and Fusarium chlamydosporum causing with wilt complex in Northern Karnataka on Coleusforskohlii

A pot culture experiment was carried out to study the interaction of Melodogyne incognita and Fusarium chlamydosporurn on Coleus forskohlii. The nematode multiplication was adversely affected when fungus was inoculated prior to nematode. Simultaneous inoculation of nematode and fungus as well as nematode followed by fungus seven days later, caused 85.5 per cent root rot disease and significant reduction in plant growth as well as nematode multiplication when compared to the inoculation fungus alone or fungus inoculation prior to nematode.     

Screening of genotypes for their resistance againstMeloidogyne incognita and Fusarium chlamydosporum causing wilt complex on Coleusforskohlii Briq.

A pot culture experiment was carried out for the Screening of 11 popular genotypes against to Meloidogyne incognita and Fusarium chlamydosporum wilt complex on Coleus forskohlii. Genotype viz., yellow tubers and Rabakavi local showed resistant reaction, Orange tuber and Nimbanur local showed moderately resistant reaction. Rest of the seven genotvDes showed suscentible reactions.     

Delineation of Inheritance Pattern of Aleurone Layer Colour Through Chemical Tests in Rice

Background

Rice aleurone layer develops different colours with various chemical tests that may help to develop some rapid tests for identification/grouping of rice varieties. Understanding the colour inheritance pattern could enable to develop chemical clues that may help for genetic purity analysis along with grow-out-test.

Results

In this study, inheritance pattern of aleurone layer colour was studied in parents, F₁ and F₂ progenies derived from the crosses IR 36 × Acc. No. 2693 and IR 64 × Acc. No. 2693. The parent IR 36 showed light yellow (NaOH/KOH) and brown (phenol/modified phenol test) colour; whereas, Acc. No. 2693 revealed wine red/dark wine red (NaOH/KOH) and light brown colour/no reaction (phenol/modified phenol test). In contrary, another parent IR 64 exhibited light yellow (KOH/NaOH) and dark brown (phenol, modified phenol) colour. Both the F₁ showed an intermediate light wine red colour (NaOH/KOH) and dark brown (phenol and modified phenol) colour, which is dominant over their one of the parents. The colour pattern with standard phenol/modified phenol, NaOH and KOH tests in F₂ progenies of both the crosses showed 9:7 (complementary gene interaction) and 11:5 ratios (reciprocal dominance modification of recessive alleles), respectively.

Conclusions

Our findings clearly elucidate the colour inheritance pattern in rice that may facilitate to develop rapid chemical tests to identify/ group the varieties for genetic purity analysis.