Molecular mapping of a new gene for resistance to rice blast (Pyricularia grisea Sacc.)

A single dominant blast resistance gene conferring resistance to a Korean rice blast isolate was identified in rice variety `Suweon 365'. We report the chromosomal localization and molecular mapping of this blast resistance gene designated as Pi-18, which confers resistance to Korean isolate `KI-313' of the blast pathogen. To know whether there is a relationship among genes conditioning resistance to location-specific isolates of the blast pathogen and thereby to identify linked markers to resistance gene for isolate KI-313 collected in Korea, RFLP markers previously reported to be linked to major blast resistance genes in different rice germplasm and other markers mapped to nearby regions were surveyed for polymorphism between a resistant (`Suweon 365') and a susceptible (`Chucheongbyeo') parent. Linkage associations of the RFLP markers with the resistance gene were verified using an F2 and F3 segregating population of known blast reaction. RFLP analysis showed that Pi-18 was located near the end of chromosome 11, linked to a single copy clone RZ536 at a distance of 5.4 centiMorgans (cM) and that this gene was different from Pi-1(t). An allelism test revealed that this gene was also different from Pi-k. Currently, a combination of RAPD and microsatellite primers is being employed to find additional markers in this region. Tightly linked DNA markers will facilitate selection for resistant genotypes in breeding programs and provide the basis for map based cloning of this new blast resistance gene. This revised version was published online in July 2006 with corrections to the Cover Date.     

Interpreting the temperature-induced response of ammonia oxidizing microorganisms in soil using nitrogen isotope fractionation

Purpose  

Although nitrification plays a key role in the fate of soil nitrogen (N) under global warming, little information is available for the nitrifiers’ response to changing temperatures. Nitrogen isotope fractionation associated with nitrification can be a proxy of nitrifiers’ sensitivity to changing temperature. We hypothesized that the temperature-induced balance between the transport of substrate NH₄⁺ into the microbial cell (supply) and the intracellular NH₄⁺ oxidation (consumption) governs the intracellular NH₄⁺ concentration and then affects nitrification rates and associated isotope fractionations. This study was conducted to understand the microbial response of NH₄⁺ oxidation to changing temperatures by examining the effect of changing temperature on nitrification rate and apparent isotope fractionation.     

Natural 15N abundance of paddy rice (Oryza sativa L.) grown with synthetic fertilizer, livestock manure compost, and hairy vetch

Nitrogen isotope abundance (?? ¹⁵N) of paddy rice (Oryza sativa L.) grown for 110?days after transplanting (DAT) under field conditions with ammonium sulfate (AS with ?0.4?? as a synthetic fertilizer), pig manure compost (PMC with 15.3?? as a livestock manure compost), and hairy vetch (HV with ?0.5?? as a green manure) was investigated to test the possible use of ?? ¹⁵N technique in discriminating organically grown from conventionally grown rice. At 15 DAT, the ?? ¹⁵N of whole rice decreased (P?<?0.05) in the order of 10.5?? for PMC > 5.5?? for control (without N input) > 4.0?? for HV > 1.8?? for AS. This difference seemed to reflect primarily the ?? ¹⁵N signal of N sources. Although differences in ?? ¹⁵N of rice grown with isotopically distinct N inputs (i.e. PMC vs. AS and PMC vs. HV) became smaller over time, the difference (2.8 and 3.0?? difference at harvest on 110 DAT, respectively) was still significant (P?<?0.05). However, there was no distinguishable difference between AS and HV treatment after 42 DAT. Such effect of N inputs on ?? ¹⁵N of whole rice was also observed for root, shoot, and grain at harvest. Therefore, our study suggests that it is possible to distinguish rice grown with manure composts from that grown with synthetic fertilizers. However, if green manure of preceding N₂-fixing plants is used as the N source, ?? ¹⁵N of rice may not be a good surrogate of N sources.     

Evidence of Long-Range Transport of Pollutants from the Size-Fractionated Ionic Composition of Aerosols in the Jeju Island of Korea

The ionic composition of total suspended particulate (TSP) and fine (PM_2.5) fractions was investigated from an 1,100 site in the middle of Mt. Halla in Jeju Island, Korea from March to November 2006. The sum concentrations of cation and anion species in TSP fraction were 205 ± 170 and 183 ± 164 neq m^?3, respectively, while those for PM_2.5 as 118 ± 129 and 88.5 ± 89.3 neq m^?3, respectively. In TSP, the concentration of the major ions changed in the order of SO₄ ^2? > NH₄ ⁺ > Ca²⁺ > Na⁺ > NO₃ ^? > Mg²⁺ > K⁺ > Cl^?, while its PM_2.5 counterpart as NH₄ ⁺ > SO₄ ^2? > Ca²⁺ > NO₃ ^? > Na⁺ > Mg²⁺ > K⁺ > Cl^?. Inspection of the temporal variabilities of ionic components indicated that most ions peaked in spring or fall months. The back trajectory analysis showed that the atmospheric composition of the major ionic species was affected fairly sensitively by long-range transport from China under the favorable meteorological conditions. In contrast, the lowest ionic concentration levels were seen most abundantly, when air masses passed from South Sea. Hence, the analysis of ionic concentration data suggests that their distributions are controlled by the combined effects of various source processes including the most prominent Chinese origin and the meteorological condition favorable for such transport.     

Effect of dimethylarsenic acid (DMAA) on growth,tissue arsenic,and photosynthesis of rice plants

The effect of dimethylarsenic acid (DMAA) applied to the root on arsenic (As) uptake and concentration, net photosynthesis (Pn), and growth parameters of rice (Oryza sativa L. cv. ‘Mercury') plants was studied. The experiment consisted of four treatments (0, 0.2, 0.8, and 1.6 mg As/L) with four replications in a completely randomized design. The DMAA was applied in nutrient solution as its sodium salt. The solution culture was changed every four days to avoid changes in the As chemical form. Arsenic uptake and concentration in shoot and root increased upon increased DMAA concentration in solution. Upon uptake, DMAA was readily translocated to the shoot. At the two higher rates of DMAA application (0.8 and 1.6 mg As/L), Pn and photosynthetic capacity were significantly decreased in response to tissue As concentration. Leaf area and dry matter production were also significantly reduced at the two higher rates of DMAA. At the lower rate (0.2 mg As/L) of DMAA application, there was no significant reduction in Pn or growth. Dimethylarsenic acid application did not affect nutrient allocation within the rice plant at concentration levels used in this study.     

Biochemically marked lymphocytoid lines: establishment of Lesch-Nyhan cells

Two lymphocytoid cell lines have been established from a patient with the Lesch-Nyhan syndrome. The cells are deficient in hypoxanthine-guanine phosphoribosyltransferase, as demonstrated by their failure to incorporate [H(3)]hypoxanthine and by their inability to grow in medium in which they were nutritionally dependent upon exogenous hypoxanthine. This represents the first establishment of presumptively permanent human lymphocytoid cell lines that are deficient in a specific enzyme.     

Identification of a RAPD marker linked to a brown planthopper resistance gene in rice

We report the tagging of a brown planthopper (BPH) resistance gene (Bph–1) in rice using RAPD and RFLP markers. The Korean rice variety ‘Gayabyeo’ has dominant duplicate genes including Bph–1 conferring resistance to biotype 1 of BPH. Bulked segregant RAPD analysis was employed for rapid identification of DNA markers linked to resistance genes. For tagging these two genes, an F2F3 population from a ‘Gayabyeo’ × ‘Nagdongbyeo’ cross was developed and evaluated for BPH resistance. Three bulked DNAs from two groups of homozygous BPH resistant (each for Bph–1 and the other unknown gene) and homozygous susceptible F2 plants were analyzed by RAPD using 140 random oligomers. One primer, OPD–7 yielded a 700-bp fragment that was present in Gayabyeo and resistant F2 plants (homozygous for Bph-1 locus) but absent in Nagdongbyeo and susceptible F2 plants. Cosegregation of this marker with Bph-1 was verified using an F2 population segregating for Bph-1. Chromosomal regions surrounding the Bph-1 were examined with additional RFLP and microsatellite markers on chromosome 12 to define the location of the RAPD marker and Bph-1. Use of this RAPD marker could facilitate early selection of resistant lines for BPH. This revised version was published online in July 2006 with corrections to the Cover Date.     

Progress of Study on Oriented Growth of Carbon Nanotubes

Owing to unique structure and characteristics of carbon nanotubes, much more are attracted attentions since they were discovered. In recent years, carbon nanotubes have been successfully synthesized by various methods. Especially, highly aligned carbon nanotubes were grown by chemical vapor deposition (CVD) and the oriented growth of carbon nanotubes became realized, resulting in many applications of carbon nanotubes and researches on them. In the work, the methods and mechanisms of orientation growth of carbon nanotubes were reviewed, and it was analyzed and discussed that different methods influenced on the process of growing carbon nanotubes. Simultaneously, it was emphatically analyzed that catalyst particles affected on orientation growth of carbon nanotubes during their growth.     

QTL mapping for capsaicin and dihydrocapsaicin content in a population of Capsicum annuum ‘NB1’ × Capsicum chinense ‘Bhut Jolokia’

Capsaicinoids are pungent compounds used for industrial and medical purposes including food, medicine and cosmetics. The Indian local variety ‘Bhut Jolokia’ (Capsicum chinense Jacq.) is one of the world's hottest chilli peppers. It produces more than one million Scoville heat units (SHUs) in total capsaicinoids. In this study, our goal was to identify quantitative trait loci (QTLs) responsible for the high content of capsaicin and dihydrocapsaicin in ‘Bhut Jolokia’. Capsicum annuum ‘NB1’, a Korean pepper inbred line containing 14 000 SHUs, was used as a maternal line. An F₂ population derived by crossing between ‘NB1’ and ‘Bhut Jolokia’ was generated to map QTLs for capsaicinoids content. A total of 234 markers, including 201 HRM, 21 SSR, 2 CAPS and 10 gene‐based markers of the capsaicinoid synthesis pathway, were mapped. The final map covered a total distance of 1175.2 cM and contained 12 linkage groups corresponding to the basic chromosome number of chilli pepper. Capsaicin and dihydrocapsaicin content were analysed in 175 F₂ pepper fruits using the HPLC method. The maximum total capsaicinoids content was 1389 mg per 100g DW (dry weight), and the minimum content was 11 mg per 100g DW. Two QTLs (qcap3.1 and qcap6.1) for capsaicin content were identified on LG3 and LG6, and two QTLs (qhdc2.1 and qdhc2.2) for dihydrocapsaicin content were located on LG2. We did not detect QTLs for total capsaicinoids content. The QTL positions for capsaicin content were different from those for dihydrocapsaicin content. These results indicate that the complexity of selecting for more pungent chilli peppers must be considered in a chilli pepper breeding programme. The QTL‐linked markers identified here will be helpful to develop more pungent pepper varieties from ‘Bhut Jolokia’, a very hot pepper.