Development of an algorithm identifying maximally diverse core collections

The development of a core collection, one which represents the genetic diversity of a crop with minimal redundancy and increases utility of the collection as a whole, is especially important as the funding for germplasm collections decreases. With limited resources, it is difficult to manage large germplasm collections and disperse genetically diverse germplasm to plant breeders. An algorithm was developed to assist in selection of core collections based on estimates of genetic distance. The criteria for selection of the maximum genetically diverse set were based on rankings of genetic distance between an accession with respect to all other accessions. Depending on the size core which a user wished, a zone around each selected accession was determined and no other accession within these limits was selected. The premise for the algorithm was that the genetic variability represented in the core must be representative of the distribution of genetic distances within the population of interest. In the present study, the algorithm was used with RAPD-marker-based estimates of genetic distance for 270 Theobroma cacao L. accessions and 134 Capsicum accessions that chose a set representing 18.5% of the population and representing the breadth of RAPD-based variation.     

The Economics Associated with Crawfish Production from Louisiana's Atchafalaya Basin 1

Unpredictable water levels for the Atchafalaya River resulting from man's efforts to prevent flooding in South Louisiana lead to an unstable market for Louisiana's annual crawfish production. Empirical models presented show that yields from the basin can be estimated on a monthly basis using bimonthly changes in water level, unemployment rates, and crawfish harvests from ponds. The monthly demand model for basin crawfish yielded a price flexibility of –0.059 and a corresponding price elasticity of –16.94. These empirical results support hypotheses that substitutes for crawfish are available to consumers. Uncertain yields from the basin due to the sort of water level fluctuations documented in this study suggest that investment in this area of the Louisiana crawfish industry will continue to be hampered.     

Thyroid Hormones and Their Influences on Larval Performance and Incidence of Cannibalism in Walleye Stizostedion vitreum1

Thyroid hormones, 3,5,3′,5′- tetraiodothyronine (T₄) and 3,5,3′- triiodothyronine (T₃) have been found in the eggs of several teleost species and are potential regulators of larval development, growth, and survival. The purpose of the present study was to determine whether natural variation of T₃ and T₄ in the eggs of six stocks of walleye, five wild stocks from Kansas, Iowa, Wisconsin, Minnesota, and North Dakota, and a semi-domesticated stock from an Ohio fish hatchery, have an effect on larval performance in mass culture. Immersion studies were conducted with samples of larvae from four of the same stocks at exposure concentrations of 0.01, 0.05, and 0.1 ppm of T₃ and T₄. Natural egg concentrations of T₃ (range from 0.70 to 1.5 ng/g wet weight of egg) were not significantly different among stocks. Although means of T₄ concentration among stocks were significantly different (range 0.53–9.27 ng/g), the difference was caused by the exceptionally high concentration for the Wisconsin stock (9.27 ng/g ± 2.20). Performance measures of the Wisconsin stock (Mississippi River), were not related to T₄ concentration in that stock. In spite of similarity in concentrations of T₄ and T₃ in the eggs, there were significant performance differences among the stocks (survival to 21 d, gas bladder inflation, viability, cannibalism, and growth). The immersion studies, however, revealed a significant difference in incidence of cannibalism and temperature units (TU) to 50% mortality (i.e., survival) between the control groups and treatment groups exposed to 0.01 to 0.1 ppm T₃ and T₄. Survival was extended more than 2-fold longer in larvae immersed in T₃ compared with T₄. The immersion study indicated that thyroid hormones are potentially regulators of walleye development, but further investigations are needed to determine reasons for differences in larval performance based on natural concentrations in the egg and artificial exposure (immersion).     

Anti-Liver Membrane Protein Antibodies in Dogs With Chronic Hepatitis

Serum from 21 dogs with chronic hepatitis was evaluated for anti-liver membrane protein (anti-LMP) antibodies by an enzyme-linked immunosorbent assay. Ten of the 21 dogs had anti-LMP antibody concentrations greater than 2 SD above the mean value for the 10 healthy control dogs; titers ranged from 1:40 to greater than 1:1,600. Anti-LMP—positive dogs were not restricted by breed, had higher alanine amino transferase activity and total bilirubin concentration, and more severe liver lesions when compared with anti-LMP—negative dogs. This study provided evidence of humoral autoantibodies in dogs with chronic hepatitis, but it did not determine if the autoantibodies were primary or secondary.     

Dryness thresholds for fire occurrence vary by forest type along an aridity gradient: evidence from Southern Australia

Context

Wildfires are common in localities where there is sufficient productivity to allow the accumulation of biomass combined with seasonality that allows this to dry and transition to a flammable state. An understanding of the conditions under which vegetated landscapes become flammable is valuable for assessing fire risk and determining how fire regimes may alter with climate change.

Objectives

Weather based metrics of dryness are a standard approach for estimating the potential for fires to occur in the near term. However, such approaches do not consider the contribution of vegetation communities. We aim to evaluate differences in weather-based dryness thresholds for fire occurrence between vegetation communities and test whether these are a function of landscape aridity.

Methods

We analysed dryness thresholds (using Drought Factor) for fire occurrence in six vegetation communities using historic fires events that occurred in South-eastern Australia using logistic regression. These thresholds were compared to the landscape aridity for where the communities persist.

Results

We found that dryness thresholds differed between vegetation communities, and this effect could in part be explained by landscape aridity. Dryness thresholds for fire occurrence were lower in vegetation communities that occur in arid environments. These communities were also exposed to dry conditions for a greater proportion of the year.

Conclusions

Our findings suggest that vegetation driven feedbacks may be an important driver of landscape flammability. Increased consideration of vegetation properties in fire danger indices may provide for better estimates of landscape fire risk and allow changes to fire regimes to be anticipated.

     

Presumed primary immune-mediated thrombocytopenia in four cats

Feline primary immune-mediated thrombocytopenia (pIMT) is a rare hematological disorder. Platelet-bound antibody assays for cats have variable specificity and sensitivity and are not widely available. Diagnosis of pIMT is made on the basis of exclusion of other identifiable causes of thrombocytopenia and the response to immunosuppressive therapy. This report describes four cats with severe thrombocytopenia and no detectable underlying disease. One cat was euthanased because of pulmonary hemorrhage, while the other cats had frequent relapses, two of these cats developed diabetes mellitus due to long-term corticosteroid therapy. In these cats IMT had a chronic course and responded poorly to therapy with prednisolone. Alternative immunomodulatory drugs may be considered in the treatment of feline IMT.     

Expression and the molecular forms of neutrophil gelatinase‐associated lipocalin and matrix metalloproteinase 9 in canine mammary tumours

Neutrophil gelatinase‐associated lipocalin (NGAL) is a new biomarker for renal injury. It is also involved in tumorigenesis of different human cancer types. The oncogenic role of NGAL is related to its molecular forms, and heterodimer formation with matrix metalloproteinase 9 (MMP9) promotes human breast cancer (HBC) invasion and metastasis. To date, the levels of NGAL and NGAL/MMP9 complex have not yet been explored in canine mammary tumours (CMTs). Hence, this study aimed to investigate whether NGAL and its molecular forms could be the biomarker for CMT diagnosis. To this end, expression profile of NGAL and MMP9 in mammary epithelial cells as well as in urine samples were detected. By immunohistochemistry staining, NGAL was expressed at variable levels. Unlike HBC, a significant reduction in NGAL expression was demonstrated in benign and malignant CMTs as compared with normal controls. Additionally, NGAL expression was significantly reduced in dogs with metastatic CMTs. By contrast, the mean score of MMP9 expression in ascending order was normal groups, benign, and malignant CMTs. Interestingly, analysis of the molecular form revealed the NGAL/MMP9 complex presents in most mammary tissues and urine of dogs with benign or malignant CMTs, whereas the complex was absent in samples from dogs without CMTs. In conclusion, NGAL and MMP9 are ubiquitously expressed in canine mammary epithelial cells in normal and cancerous status. However, the NGAL/MMP9 complex exclusively presents in mammary tissues and urine of dogs with tumours.     

Early vascular sporulation: a possible role in the virulence of Verticillium albo-atrum in wilt of alfalfa

Serial subculturing of an alfalfa field isolate of Verticillium albo-atrum produced two variants which were significantly less virulent than the original. When conidia of the original isolate, stored at − 70 °C, were infused into alfalfa cuttings, the pathogen grew from spore trapping sites into contiguous vessels and began to sporulate within 24 h. The frequency of vessels in which sporulation occurred at 24 h was similar in alfalfa genotypes known to differ in disease ratings and in host resistance to lateral penetration of vessels. With conidia of the two variants as inoculum, hyphae were found to penetrate much more extensively from trapping ites into adjacent vessels by 24 h. However, the more virulent original isolate sporulated two to three times more frequently. An isolate of V. albo-atrum from potato, which was non-pathogenic to alfalfa, had limited lateral penetrating ability in alfalfa but never sporulated by 24 h in laterally penetrated vessels. Of parameters studied, including sporulation and radial growth, only early vascular sporulation in laterally penetrated vessels correlated with the greater virulence of the original alfalfa isolate.     

Relationships between watershed Stressors and sediment contamination in Chesapeake Bay estuaries

Three methods for assessing the relationships between estuarine sediment contaminant levels and watershed Stressors for 25 Chesapeake Bay sub-estuaries were compared. A geographic information system (GIS) was used to delineate watersheds for each sub-estuary and analyze land use pattern (area and location of developed, herbaceous and forested land) and point source pollution (annual outflow and contaminant loading) using three landscape analysis methods: (1) a watershed approach using the watershed of the estuary containing the sampling station. (2) a partial watershed approach using the area of the watershed within a 10 km radius of the sampling station and (3) a weighted partial watershed approach where Stressors within the partial watershed were weighted by the inverse of their linear distance from the sampling station. Nine sediment metals, 16 sediment organics and seven metals loading variables were each reduced to one principal component for statistical analyses. Relationships between the first principal components for sediment metals and organics concentrations and watershed stressor variables were analyzed using rank correlation and stepwise multiple regression techniques. For both metals and organics, the watershed method yieldedR ² values considerably lower than the partial and weighted partial watershed analysis methods. Regression models using Stressor data generated by the weighted partial watershed landscape analysis method explained 76% and 47% of the variation in the first principal component for sediment metals and organics concentrations, respectively. Results suggest that the area of developed land located in the watershed within 10 km of the sediment sampling station is a major contributing factor in the sediment concentrations of both metals and organics.