Realizing the potential of trait‐based approaches to advance fisheries science

Analysing how fish populations and their ecological communities respond to perturbations such as fishing and environmental variation is crucial to fisheries science. Researchers often predict fish population dynamics using species‐level life‐history parameters that are treated as fixed over time, while ignoring the impact of intraspecific variation on ecosystem dynamics. However, there is increasing recognition of the need to include processes operating at ecosystem levels (changes in drivers of productivity) while also accounting for variation over space, time and among individuals. To address similar challenges, community ecologists studying plants, insects and other taxa increasingly measure phenotypic characteristics of individual animals that affect fitness or ecological function (termed “functional traits”). Here, we review the history of trait‐based methods in fish and other taxa, and argue that fisheries science could see benefits by integrating trait‐based approaches within existing fisheries analyses. We argue that measuring and modelling functional traits can improve estimates of population and community dynamics, and rapidly detect responses to fishing and environmental drivers. We support this claim using three concrete examples: how trait‐based approaches could account for time‐varying parameters in population models; improve fisheries management and harvest control rules; and inform size‐based models of marine communities. We then present a step‐by‐step primer for how trait‐based methods could be adapted to complement existing models and analyses in fisheries science. Finally, we call for the creation and expansion of publicly available trait databases to facilitate adapting trait‐based methods in fisheries science, to complement existing public databases of life‐history parameters for marine organisms.     

Thermal disinfection of seawater for aquacultural purpose

The dose of heat required to kill Vibrio anguillarum has been determined. The results show that > 99·97% inactivation was obtained after 3 min exposure to 44·0°C. After 2 min exposure to 47·5°C, > 99·99% inactivation was obtained. The results indicate that heating is a useful method for safe disinfection of small amounts of water.     

Understanding root,tuber, and banana seed systems and coordination breakdown: a multi-stakeholder framework

Vegetatively propagated crop (VPC) seed tends to remain true to varietal type but is bulky, often carries disease, and is slow to produce. So VPC seed needs to be handled differently than that of other crops, e.g., it tends to be sourced locally, often must be fresh, and it is less often sold on the market. Hence, a framework was adapted to describe and support interventions in such seed systems. The framework was used with 13 case studies to understand VPC seed systems for roots, tubers, and bananas, including differing roles and sometimes conflicting goals of stakeholders, and to identify potential coordination breakdowns when actors fail to develop a shared understanding and vision. In this article, we review those case studies. The framework is a critical tool to (a) document VPC seed systems and build evidence; (b) diagnose and treat coordination breakdown and (c) guide decision-makers and donors on the design of more sustainable seed system interventions for VPCs. The framework can be used to analyze past interventions and will be useful for planning future VPC seed programs.     

High-EPA Biomass from Nannochloropsis salina Cultivated in a Flat-Panel Photo-Bioreactor on a Process Water-Enriched Growth Medium

Nannochloropsis salina was grown on a mixture of standard growth media and pre-gasified industrial process water representing effluent from a local biogas plant. The study aimed to investigate the effects of enriched growth media and cultivation time on nutritional composition of Nannochloropsis salina biomass, with a focus on eicosapentaenoic acid (EPA). Variations in fatty acid composition, lipids, protein, amino acids, tocopherols and pigments were studied and results compared to algae cultivated on F/2 media as reference. Mixed growth media and process water enhanced the nutritional quality of Nannochloropsis salina in laboratory scale when compared to algae cultivated in standard F/2 medium. Data from laboratory scale translated to the large scale using a 4000 L flat panel photo-bioreactor system. The algae growth rate in winter conditions in Denmark was slow, but results revealed that large-scale cultivation of Nannochloropsis salina at these conditions could improve the nutritional properties such as EPA, tocopherol, protein and carotenoids compared to laboratory-scale cultivated microalgae. EPA reached 44.2% ± 2.30% of total fatty acids, and α-tocopherol reached 431 ± 28 µg/g of biomass dry weight after 21 days of cultivation. Variations in chemical compositions of Nannochloropsis salina were studied during the course of cultivation. Nannochloropsis salina can be presented as a good candidate for winter time cultivation in Denmark. The resulting biomass is a rich source of EPA and also a good source of protein (amino acids), tocopherols and carotenoids for potential use in aquaculture feed industry.     

Lipids and Composition of Fatty Acids of Saccharina latissima Cultivated Year-Round in Integrated Multi-Trophic Aquaculture

This study is evaluating the seasonal lipid and fatty acid composition of the brown seaweed Saccharina latissima. Biomass was sampled throughout the year (bi-monthly) at the commercial cultivation site near a fish farm in an integrated multi-trophic aquaculture (IMTA) and at a reference site in Denmark (2013–2014). Generally, there was no difference in the biomass composition between sites; however, significant seasonal changes were found. The lipid concentration varied from 0.62%–0.88% dry weight (DW) in July to 3.33%–3.35% DW in November (p < 0.05) in both sites. The fatty acid composition in January was significantly different from all the other sampling months. The dissimilarities were mainly explained by changes in the relative abundance of 20:5n-3 (13.12%–33.35%), 14:0 (11.07%–29.37%) and 18:1n-9 (10.15%–16.94%). Polyunsaturated fatty acids (PUFA’s) made up more than half of the fatty acids with a maximum in July (52.3%–54.0% fatty acid methyl esters; FAME). This including the most appreciated health beneficial PUFA’s, eicosapentaenoic (EPA; 20:5n-3) and docosahexaenoic acid (DHA; 22:6n-3), but also arachidonic (ARA) and stearidonic acid (SDA), which are not found in land vegetables such as cabbage and lettuce. Compared to fat (salmon) and lean fish (cod) this seaweed species contains higher proportions of ARA and SDA, but lower EPA (only cod) and DHA. Conclusively, the season of harvest is important for the choice of lipid quantity and quality, but the marine vegetables provide better sources of EPA, DHA and long-chain (LC)-PUFA’s in general compared to traditional vegetables.     

Multiple measurements constrain estimates of net carbon exchange by a Eucalyptus forest

Net ecosystem exchange of carbon (F_NEE) was estimated for a temperate broadleaf, evergreen eucalypt forest ecosystem at Tumbarumba in south-eastern Australia to investigate the processes controlling forest carbon sinks and their response to climate. Measurements at a range of temporal and spatial scales were used to make three different estimates of F_NEE based on: (1) the difference between fluxes of carbon input by photosynthesis and output by autotrophic plus heterotrophic respiration, (2) changes over time in the carbon pools in the above- and below-ground biomass, soil and litter, and (3) micrometeorological flux measurements that provide a continuous estimate of the net exchange. A rigorous comparison of aggregated component fluxes and the net eddy fluxes within a flux tower source area was achieved based on an inventory of the site and a detailed sampling strategy. Measurements replicated in space and time provided mean values, confidence limits and patterns of variation of carbon pools and fluxes that allowed comparisons within known limits of uncertainty. As a result of comparisons between nighttime eddy flux and chamber measurements of respiration, a revised micrometeorological method was developed for estimating nighttime carbon flux using flux tower measurements. Uncertainty in the final estimate of F_NEE was reduced through mutual constraints of each of these measurement approaches. F_NEE for the period October 2001–September 2002, with average rainfall, was an uptake of 6.7 (5.1–8.3) tC ha^?1 yr^?1 estimated from component fluxes, and 5.4 (3.0–7.5) tC ha^?1 yr^?1 estimated from the revised eddy flux method. Biomass increment was 4.5 (3.7–5.4) tC ha^?1 yr^?1 and the remaining 0.9–2.2 tC ha^?1 yr^?1 could represent a carbon sink in the soil and litter pools or lie within the confidence limits of the measured fluxes. F_NEE was reduced to ?0.1 to 2.4 tC ha^?1 yr^?1 during a period of drought and insect disturbance in October 2002–September 2003, with biomass increment being the main component reduced. The forest is a large carbon sink compared with other forest ecosystems, but this is subject to high-annual variability in response to climate variability and disturbance.     

Outcomes of Heimlich valve drainage in dogs

Objective and design   Retrospective study of the outcomes of Heimlich valve drainage in dogs.
Procedure   Medical records of the past 3 years were retrospectively reviewed. Heimlich valve drainage was used in 34 dogs (median body weight 30 ± 5 kg): lobectomy (n = 15), pneumonectomy (n = 9), intrathoracic oesophageal surgery (n = 2), diaphragmatic hernia repair (n = 1), traumatic open pneumothorax (n = 2), bilobectomy (n = 2), ligation of the thoracic duct (n = 1), and chylothorax and pneumothorax (n = 1 each). Evacuation of air and/or fluid from the pleural cavity was performed with the Heimlich valve following thoracostomy tube insertion. During drainage, the dogs were closely monitored for possible respiratory failure. Termination of Heimlich valve drainage was controlled with underwater seal drainage and assessed with thoracic radiography.
Results   Negative intrathoracic pressure was provided in 29 dogs without any complications. Post pneumonectomy respiratory syncope and post lobectomy massive hemothorax, which did not originate from the Heimlich valve, were the only postoperative complications. Dysfunction of the valve diaphragm, open pneumothorax and intrathoracic localisation of an acute gastric dilatation–volvulus syndrome caused by a left-sided diaphragmatic hernia following pneumonectomy were the Heimlich valve drainage complications.
Conclusions   The Heimlich valve can be used as a continuous drainage device in dogs, but the complications reported here should be considered by veterinary practitioners.     

Epigenetic reprogramming in plant and animal development

Epigenetic modifications of the genome are generally stable in somatic cells of multicellular organisms. In germ cells and early embryos, however, epigenetic reprogramming occurs on a genome-wide scale, which includes demethylation of DNA and remodeling of histones and their modifications. The mechanisms of genome-wide erasure of DNA methylation, which involve modifications to 5-methylcytosine and DNA repair, are being unraveled. Epigenetic reprogramming has important roles in imprinting, the natural as well as experimental acquisition of totipotency and pluripotency, control of transposons, and epigenetic inheritance across generations. Small RNAs and the inheritance of histone marks may also contribute to epigenetic inheritance and reprogramming. Reprogramming occurs in flowering plants and in mammals, and the similarities and differences illuminate developmental and reproductive strategies.     

The potato breeding programme in Denmark

Summary Frem 1948 onward there has been a marked increase in potato breeding work in Denmark. This is due to the fact that the Danish Agriculture Potato Fund was established in this year and its proceeds are devoted to the advancement of potato breeding in Denmark. The fund owns the Potato Breeding Station at Vandel, near Vejle, and this together with the State Research Station at Tylstrup are the only places in Denmark where potato breeding is carried out. Breeding of ware varieties constitutes a great part of the work, although the breeding of varieties used for fodder and industrial purposes is also an important aspect of the work. The quality and yield capacity of the new varieties are very important considerations, although the present work of breeding also aims at finding varieties which are only slightly affected by late blight and common scab. As the conditions governing the production of virus-free seed potatoes, do not constitute any serious problem in Denmark, little attention has been paid to the finding of virus-resistant varieties, except on the case of special varieties intended for export. The station in Vandel owns a fairly large collection of wild and cultivated species of potatoes. Three of the most promising varieties from Vandel will be sent for an official test as from 1958.

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Zusammenfassung Seit dem Jahre 1948 ist die Arbeit der Kartoffelzüchtung in D?nemark ganz bedeutend erweitert worden, da in diesem Jahre der ?Kartoffelfonds der Landwirtschaft? gegründet wurde, dessen Ertrag in erster Linie die Kartoffelzüchtung D?nemarks stützen soll. Der Fonds besitzt die Zuchtstation bei Vandel. Zusammen mit der Versuchsstation in Tylstrip im Besitz des Staates, ist es die einzigen Stelle in D?nemark, wo Kartoffelzüchtung betrieben wird. Die Züchtung von Speisekartoffeln ist sehr wichtig, aber auch die Arbeit mit Futter- und Fabrikkartoffeln ist von gr?sster Bedeutung. Eigenschaften, wie Ertrag und Qualit?t der neuen Kartoffelsorten, sind von besonderer Wichtigkeit, aber eines der Ziele der jetzigen Züchtungsarbeit ist, Kartoffelsorten zu finden, die nicht so stark von Krautf?ule und Kartoffelschorf angegriffen werden. Da die Bedingungen für die Erzeugung von virusfreien Saatkartoffeln in D?nemark sehr günstig sind, hat man nicht viel Interesse daran, virusresistente Sorten zu züchten, mit Ausnahme von Kartoffelsorten für Export. Auf der Station in Vandel befindet sich eine gr?ssere Sammlung von wilden und kultiviertenSolanum-Arten, die einer der Mitarbeiter der Station aus verschiedenen südamerikanischen Staaten mitgebracht hat. Drei neue Sorten haben bei den vorl?ufigen Prüfungen gute Resultaten ergeben.

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Résumé A partir de l'année 1948 l'ocuvre sélectionnaire de la pomme de terre au Danemark a pris un large essor. C'est que dans cette année fut institutée la ?Caisse Agricole de la Pomme de terre?, dont les fonds sont réservés en premier lieu à soutenir l'oeuvre sélectionnaire de la pomme de terre au Danemark. La ?Caisse? exploite la Station d'expérimentation à Vandel qui, ensemble avec la Station d'essais à Tylstrup-également un institut de l'Etat-sont les seules institutions au Danemark où l'on se voue à l'oeuvre sélectionnaire de la pomme de terre. La culture de la pomme de terre de consommation revêt une importance particulière, tout comme d'ailleurs celle des pommes de terre fourragères et industrielles. Les propriétés des nouvelles variétés, telles que rendement et qualité, sont très importantes, mais l'un des objectifs de l'oeuvre sélectionnaire de nos jours est de créer des variétés de pommes de terre résistantes au mildiou et à la gale commune. Etant donné que les conditions de production pour plants de pommes de terre exempts de toute contagion virologique sont très favorables au Danemark, on s'intéresse peu à la culture de variétés résistantes aux maladies à virus, sauf les variétés de pommes de terre destinées à l'exportation. A la Station à Vandel on dispose d'une collection assez riche de variétésSolanum sauvages et cultivées en provenance de différents états américains et approtées par l'un des chercheurs de cet Institut. Trois variétés ont fait l'objet d'expériences entreprises à titre provisoire, et elles ont donné de bons résultats.

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Lecture held at Lund, August 1957