Use of a substrate/alliinase combination to generate antifungal activity in situ

Allicin, an active ingredient of garlic, possesses a range of antimicrobial properties. Unfortunately, certain properties of the compound, such as chemical instability and low miscibility with water, have hampered its practical use in the past. Here, we show that it is possible to use a binary system consisting of the plant enzyme alliinase and its substrate alliin to generate allicin, and hence antifungal activity, in situ. During application, the two inactive components generate compounds that inhibit growth and infection-related development of the rice blast fungus Magnaporthe grisea. It is therefore possible to "trigger" biological activity in a controlled, yet effective manner. Apart from circumventing many of the drawbacks of allicin, this binary system has additional important advantages, such as low toxicity of its individual components and selective activation. Importantly, alliinase is also able to use different substrates, therefore paving the way to a range of novel, binary antimicrobial systems with custom-made chemical and biochemical properties.     

Modeling soil metabolic processes using isotopologue pairs of position-specific C-labeled glucose and pyruvate

Most organic carbon (C) in soils eventually turns into CO₂ after passing through microbial metabolic pathways, while providing cells with energy and biosynthetic precursors. Therefore, detailed insight into these metabolic processes may help elucidate mechanisms of soil C cycling processes. Here, we describe a modeling approach to quantify the C flux through metabolic pathways by adding 1-¹³C and 2,3-¹³C pyruvate and 1-¹³C and U-¹³C glucose as metabolic tracers to intact soil microbial communities. The model calculates, assuming steady-state conditions and glucose as the only substrate, the reaction rates through glycolysis, Krebs cycle, pentose phosphate pathway, anaplerotic activity through pyruvate carboxylase, and various biosynthesis reactions. The model assumes a known and constant microbial proportional precursor demand, estimated from literature data. The model is parameterized with experimentally determined ratios of ¹³CO₂ production from pyruvate and glucose isotopologue pairs. Model sensitivity analysis shows that metabolic flux patterns are especially responsive to changes in experimentally determined ¹³CO₂ ratios from pyruvate and glucose. Calculated fluxes are far less sensitive to assumptions concerning microbial chemical and community composition. The calculated metabolic flux pattern for a young volcanic soil indicates significant pentose phosphate pathway activity in excess of pentose precursor demand and significant anaplerotic activity. These C flux patterns can be used to calculate C use efficiency, energy production and consumption for growth and maintenance purposes, substrate consumption, nitrogen demand, oxygen consumption, and microbial C isotope composition. The metabolic labeling and modeling methods may improve our ability to study the biochemistry and ecophysiology of intact and undisturbed soil microbial communities.     

Modeling carbon allocation in trees: a search for principles

We review approaches to predicting carbon and nitrogen allocation in forest models in terms of their underlying assumptions and their resulting strengths and limitations. Empirical and allometric methods are easily developed and computationally efficient, but lack the power of evolution-based approaches to explain and predict multifaceted effects of environmental variability and climate change. In evolution-based methods, allocation is usually determined by maximization of a fitness proxy, either in a fixed environment, which we call optimal response (OR) models, or including the feedback of an individual's strategy on its environment (game-theoretical optimization, GTO). Optimal response models can predict allocation in single trees and stands when there is significant competition only for one resource. Game-theoretical optimization can be used to account for additional dimensions of competition, e.g., when strong root competition boosts root allocation at the expense of wood production. However, we demonstrate that an OR model predicts similar allocation to a GTO model under the root-competitive conditions reported in free-air carbon dioxide enrichment (FACE) experiments. The most evolutionarily realistic approach is adaptive dynamics (AD) where the allocation strategy arises from eco-evolutionary dynamics of populations instead of a fitness proxy. We also discuss emerging entropy-based approaches that offer an alternative thermodynamic perspective on allocation, in which fitness proxies are replaced by entropy or entropy production. To help develop allocation models further, the value of wide-ranging datasets, such as FLUXNET, could be greatly enhanced by ancillary measurements of driving variables, such as water and soil nitrogen availability.     

Germination in five shrub species of Maritime Pine understory—does seed provenance matter?

? Context

Maritime Pine forests cover important mountain areas in Portugal and are known to be a particularly fire-prone forest type. Understory composition plays an important role in maintaining biodiversity and ecosystem services after recurrent wildfires.

? Aims

This study aims to improve the knowledge on the germination ecology of understory species of Maritime Pine forests, focusing on the importance of seed provenance, including in relation to germination enhancement by heating.

? Methods

The selected species were Cistus ladanifer L., Erica australis L., Erica umbellata L., Pterospartum tridentatum L. (Willk), and Genista triacanthos Brot. Seeds were collected from two or three distant populations. Besides a control treatment, two heating regimes were applied, i.e., 100°C during 5?min and 80°C during 30?min.

? Results

Heating treatments significantly enhanced germination in four out of the five species. Differences between provenances were most evident for C. ladanifer and E. australis, especially following the heating treatments. Overall, the seeds from the southern provenances germinated better and, at the same time, were smaller.

? Conclusion

The present results confirmed that seed provenance should not be ignored as a key factor in germination ecology, so that further work is needed to untangle the roles of environmental and genetic factors in the observed differences between provenances.     

Antimicrobial flavonoids from the stem bark of Erythrina burttii

The chloroform extract of the stem bark of Erythrina burttii showed antifungal and antibacterial activities using the disk diffusion method. Flavonoids were identified as the active principles. Activities were observed against fungi and Gram(+) bacteria, but the Gram(-) bacteria Escherichia coli was resistant.     

Factors affecting a sheep vegetation management system in British Columbia, Canada

A silvopastoral agroforestry system involving sheep is an important silvicultural issue. We examined the factors that affect the continuation or discontinuation of sheep vegetation management (SVM) in British Columbia. A questionnaire was used to conduct interviews with a randomly selected sample of contractors and farmers who were involved in SVM in British Columbia (BC). Based on a stepwise discriminant analysis, we found that the profitability of SVM, and the practitioners' commitment (number of ewes owned by the farmer or contractor), experience (number of years the farmer or contractor has practiced SVM on public lands in BC) and trust or confidence (number of years the farmer or contractor has consistently worked for the landlord) contributed to the farmer's or contractor's continuation or discontinuation of SVM practice. The factors we defined seemed to be validated (corroborated) by a complex of determinants voiced by various experts concerning the relationship between SVM and the forestry economy in BC, the scale of sheep farming in BC, the relative absence of an agricultural infrastructure to support sheep farming in BC, and the continuity of SVM from year to year. Further investigation into these factors and others is required to advance our understanding of SVM in British Columbia. This revised version was published online in June 2006 with corrections to the Cover Date.     

Productivity of temperate broad-leaved forest stands differing in tree species diversity

? Understanding the effects of tree species diversity on biomass and production of forests is fundamental for carbon sequestration strategies, particularly in the perspective of the current climate change. However, the diversity-productivity relationship in old-growth forests is not well understood.

? We quantified biomass and above-ground production in nine forest stands with increasing tree species diversity from monocultures of beech to stands consisting of up to five deciduous tree species (Fagus sylvatica, Fraxinus excelsior, Tilia spp., Carpinus betulus, Acer spp.) to examine (a) if mixed stands are more productive than monospecific stands, (b) how tree species differ in the productivity of stem wood, leaves and fruits, and (c) if beech productivity increases with tree diversity due to lower intraspecific competition and complementary resource use.

? Total above-ground biomass and wood production decreased with increasing tree species diversity. In Fagus and Fraxinus, the basal area-related wood productivity exceeded those of the co-occurring tree species, while Tilia had the highest leaf productivity. Fagus trees showed no elevated production per basal area in the mixed stands.

? We found no evidence of complementary resource use associated with biomass production. We conclude that above-ground productivity of old-growth temperate deciduous forests depend more on tree species-specific traits than on tree diversity itself.

     

Effects of selective cutting and herbicide use in spring barley on seed production of Cirsium arvense

A field experiment was performed in Sweden to evaluate the effect of herbicide treatment and selective cutting on the seed production of Cirsium arvense. Four treatments (control (C), selective cutting (S), early (H1) and late (H2) herbicide application) were laid out in a randomized block experiment. The field was sown with spring barley and contained a natural population of the weed. Treatments were first applied 2015 and repeated 2016. Changes in the number of seeds per flower receptacle and average seed weight were measured over time in 2016 from the onset of seed production until crop harvest. At harvest, number of shoots per area and cumulative numbers of flower receptacles, which had shed mature seeds over the season, were counted. These data were used to assess total seed production over the season. Treatment H2 led to a significantly decreased number of seeds per receptacle (49) compared to S (59), H1 (64) and C (67). Over time and treatment, number of seeds per flower receptacle was lowest in the second week (47) and increased over the third week to 69 in week four. Average weight per seed was about constant over time (0.91?mg) while H1 and S (0.63 and 0.78?mg, respectively) had lower seed weights compared to H2 and C (1.04 and 1.19?mg, respectively). Total seed production over the season in terms of number of seeds per square meter was greatly reduced by all treatments (5–20 seeds m^?2, or 3–14?mg?m^?2) compared to the control (6600 seeds m^?2, or 7800?mg?m^?2). We conclude that seed production of C. arvense is inhibited a thousand-fold and equally well by selective cutting as by early or late herbicide treatments.     

Degradation of DEHP,PAHs and LAS in Source Separated MSW and Sewage Sludge During Composting

The efficiency of composting to remove the pollutants DEHP, PAHs and LAS from organic waste products was investigated. Source separated MSW and sewage sludge, respectively, were composted at temperatures ranging from 35 to 70°C using a laboratory-scale reactor composting system. At regular intervals, compost samples were taken from the reactors for chemical analysis. DEHP disappeared rapidly during composting of MSW; 96 to 99% of the initial content was degraded within 25 days of composting regardless of process temperature. In sewage sludge, the highest degradation of 91% was reached at a composting temperature of 65°C. LAS degradation in sewage sludge was fastest at 55°C, but at both process temperatures tested 99% of the initial content had been removed within 25 days. Degradation of PAHs was less complete. However, in all composting experiments, with MSW as well as sewage sludge, the final PAH concentration was less than in the starting material. Further experiments suggested that less than 0.1% of the pollutants had evaporated. Thus, composting proved to be a promising technique to promote degradation of organic pollutants — especially DEHP and LAS — in MSW and sewage sludge.