Impact of fertilization on cover crops and microbial community on a bauxite‐mined soil undergoing reclamation

The reclamation of bauxite‐mined areas can be favored by the application of organic and/or chemical fertilization to restore the vegetation. Otherwise, the impact of fertilizations on soil microbiota or plant–microbe interactions as land reclamation progresses is less understood. To address this issue, we evaluated the impact of organic and chemical fertilization on plants and soil microbial community within the first 36 months of land reclamation in a bauxite‐mined site. The experiment was set up according to a split‐plot design in which the main plots received fertilizations [non‐fertilized control (NF), chemical fertilization (CF; NPK and rock phosphate), organic fertilization (OF; poultry litter), and CF+OF combined], and the subplots received cover crops [no cover crops (NC), grass (B; Brachiaria), legume (S, Stylosanthes), and B+S combined]. Cover crops biomass yield was assessed annually with five field campaigns per year. We used phospholipid fatty acids (PLFAs) to infer the impacts of mining and restoration practices on actinobacteria, Gram‐negative and Gram‐positive bacteria, arbuscular mycorrhizal fungi, and fungi. Accordingly, PLFAs were determined before bauxite mining (pre‐mining), six months after topsoil reconfiguration (post‐mining), and after 14 and 36 months following the application of the fertilizations and cover crops. PLFAs results indicated that in post‐mining, the living microbiota was significantly lower than in pre‐mining. Cover crops biomass yield was highest for B and B+S fertilized with CF+OF at 14 and 36 months. Both parametric and non‐parametric statistics showed a temporal variation in the response of living microbes to the treatments applied. After 14 months, living microbes showed greatest response to OF, while at 36 months their response was strongest in the treatments with highest plant biomass production (B and B+S). These results suggest that in the early stages of land reclamation, living microbial biomass benefit the most from organic fertilizers. As this initial boost decline, living microbes are more likely to thrive in areas undergoing reclamation where they can develop synergistic interactions with plants.     

Throughfall quality and quantity in polluted and damaged ecosystems in Northern Bohemia

The interaction between high concentrations of polluting gases (SO₂ and NO_x) and damaged forest ecosystems was observed by studying throughfall precipitation in the Erzegebirge Mountains, Northern Bohemia. Qualitative and quantitative data on throughfall for the period November 1989–October 1990 are presented. Weighted averages of SO ₄ ^2? and NO ₃ ^? concentrations in the throughfall were 23.05 mg L^?1 and 13.61 mg L^?1 in a beech and 34.41 mg L^?1 and 11.03 mg L^?1 in a spruce forest respectively. Three variables (the molar ratios of K/Na, N_tot/S and N-NO₃/N-NE₄) were used to compare the spruce throughfall quality to that observed in areas with similar however, less damaged spruce stands. Both K/Na and N-NO₃/N-NH₄ ratios clearly decreased with increasing tree damage, the N_tot/S ratio increased. The results suggest that the throughfall in damaged ecosystems of the Erzegebirge region becomes more like a wet precipitation as the tree canopies get sparser and the trees reduce canopy leaching.     

Influence of soil and host plant crop on the genetic diversity of Azospirillum amazonense isolates

The genetic structure of Azospirillum amazonense populations isolated from the rhizosphere soil and washed and surface-sterilised roots of rice, maize and sorghum plants, cropped simultaneously in two different soils (clay loam and sandy loam) was characterised. Genetic diversity was measured by restriction fragment length polymorphism of the amplified 16S–23S rDNA intergenic spacer region (RISA-RFLP) and cluster analysis. Four genetically distinct clusters of isolates were observed with 78% similarity, suggesting that the A. amazonense population was heterogeneous at the strain level regardless of the soil type or host plant. Analysis of molecular variance (AMOVA) demonstrated that the host plant had a highly significant selective effect on the genetic structure of this species, especially on those isolates intimately associated with them, but also to a lesser extent on isolates from the rhizosphere and washed roots. The soil type also had a highly significant selective effect on A. amazonense genetic diversity, especially for those isolates from the rhizosphere soil. The selective effect of the soil type combined with that of the host plant suggests that environmental factors, such as soil texture and composition of exudates provided by C₃ or C₄ plants, play major roles in the overall genetic structure of A. amazonense populations associated with these cereals.     

Cryptosporidium scrofarum n. sp. (Apicomplexa: Cryptosporidiidae) in domestic pigs (Sus scrofa)

We describe the morphological, biological, and molecular characteristics of Cryptosporidium pig genotype II and propose the species name Cryptosporidium scrofarum n. sp. to reflect its prevalence in adult pigs worldwide. Oocysts of C. scrofarum are morphologically indistinguishable from C. parvum, measuring 4.81–5.96 μm (mean = 5.16) × 4.23–5.29 μm (mean = 4.83) with a length to width ratio of 1.07 ± 0.06 (n = 400). Oocysts of C. scrofarum obtained from a naturally infected pig were infectious for 8-week-old pigs but not 4-week-old pigs. The prepatent period in 8-week-old Cryptosporidium-naive pigs was 4–6 days and the patent period was longer than 30 days. The infection intensity of C. scrofarum in pigs was generally low, in the range 250–4000 oocysts per gram of feces. Infected pigs showed no clinical signs of cryptosporidiosis and no pathology was detected. Cryptosporidium scrofarum was not infectious for adult SCID mice, adult BALB/c mice, Mongolian gerbils (Meriones unguiculatus), southern multimammate mice (Mastomys coucha), yellow-necked mice (Apodemus flavicollis), or guinea pigs (Cavia porcellus). Phylogenetic analyses based on small subunit rRNA, actin, and heat shock protein 70 gene sequences revealed that C. scrofarum is genetically distinct from all known Cryptosporidium species.     

Gemmamyces bud blight of Picea pungens: a sudden disease outbreak in Central Europe

Due to its high tolerance to acid rain, the North American Colorado blue spruce (Picea pungens) has been among the most frequent substitute tree species used in reforestation programmes in spruce mountain forests in the Ore and Sudeten Mountains in the Czech Republic after destruction by sulphur dioxide pollution in the second half of the last century. This species was planted on more than 8800 ha of destroyed mountain forest stands in the Ore Mountains alone. New plantations prospered until a massive outbreak of the gemmamyces bud blight, first identified in 2009. The causal agent, Gemmamyces piceae, induced massive bud blight in infected trees – bud loss progressively increased to 70–80% or more, and because the trees were not able to replace the natural loss of older needles, they quickly withered and died. Many plantations disrupted by the pathogen had to be cut down. Although several resistant genotypes have been identified, the cultivation of this species in forest stands has no future in this area. Because this disease was also identified in several ornamental plantations in the area, the bud blight epidemic haunts public green space administrators and nursery and Christmas tree plantation owners. Other pathogens and pests, such as Lophodermium piceae, Sirococcus conigenus and Elatobium abietinum, have also been identified as involved in the damage to P. pungens.     

Genetics of wood quality attributes in Western Larch

Context

Wood quality traits are important to balance the negative decline of wood quality associated with selection for growth attributes in gymnosperm breeding programs. Obtaining wood quality estimates quickly is crucial for successful incorporation in breeding programs.

Aims

The aims of this paper are to: (1) Estimate genetic and phenotypic correlations between growth and wood quality attributes, (2) Estimate heritability of the studied traits, and (3) Assess the accuracy of in situ non-destructive tools as a representative of actual wood density.

Methods

Wood density (X-ray densitometry), tree height, diameter, volume, resistance drilling, acoustic velocity, and dynamic modulus of elasticity were estimated, along with their genetic parameters, for 1,200, 20-year-old trees from 25 open-pollinated families.

Results

Individual tree level heritabilities for non-destructive evaluation attributes were moderate ( $ {\widehat{h}}_i^2=0.37-0.42 $ ), wood density and growth traits were lower ( $ {\widehat{h}}_i^2=0.23-0.35 $ ). Favorable genetic and phenotypic correlations between growth traits, wood density, and non-destructive evaluation traits were observed. A perfect genetic correlation was found between resistance drilling and wood density (r _G ?=?1.00?±?0.07), while acoustic velocity and dynamic modulus of elasticity showed weaker genetic correlations with wood density (r _G ?=?0.25?±?0.24;?0.46?±?0.21, respectively).

Conclusion

This study confirmed that resistance drilling is a reliable predictor of wood density in western larch, while the weak genetic correlations displayed by acoustic velocity and dynamic modulus of elasticity suggest limited dependability for their use as fast in situ wood density assessment methods in this species.     

Eutypella parasitica naturalised in Bohemian and Polish Silesia

In 2015 and 2016, the North American maple tree pathogen Eutypella parasitica was identified in Bohemian and Polish Silesia. To date, the pathogen has been recorded in 35 locations over an area of approximately 400 km². It has been found primarily in natural stands in Silesia in several types of ravine and alluvial forests, in other natural or commercial forests, in riparian stands and in open landscapes. The proportion of diseased maples ranged between approximately 1% and 50% in certain locations. Acer pseudoplatanus was confirmed as the main host but infections were also detected on A. platanoides and A. campestre. E. parasitica damages the most valuable sycamore timber and represents a clear risk for maple cultivation in the region.     

Presence of porcine parvovirus in sera from pigs is independent of antibody titers

Porcine parvovirus (PPV) is a widespread DNA virus that causes reproductive failure in swine. The aim of the present study was to investigate the presence of PPV in sera of nursery piglets (healthy n = 191 and wasting n = 132) and regularly vaccinated sows (with different parity rank [PR] n = 129), collected from different herds. Altogether, 452 animals were sampled in 27 herds owned by five companies. All sera were analyzed for the presence of PPV DNA by nested-PCR. The samples from sows were in addition tested for the presence of antibodies by Hemagglutination Inhibition (HI). PPV DNA was detected in healthy piglets (15.7%), wasting piglets (18.2%) and sows (17.8%). 25 herds had at least one positive sample and four companies had positive animals. The serology revealed that 84.7% of the sows had detectable antibodies and the fourth PR sows had the highest mean PPV antibody titers. Thirteen sows (19.1%) were found to be positive for DNA detection in the presence of high levels of antibody titers (> 512). This finding indicates that PPV DNA can be detected in different swine production categories irrespective of antibody titers.     

Risk factors for stillbirth and foetal mummification in four Brazilian swine herds

The objective of this study was to identify the risk factors of stillbirth and foetal mummification in 565 farrowings of four commercial pig farms in Brazil. Stillborn piglets were observed in 31.3% of the litters and the stillborn risk was 5.6%. Mummified foetuses occurred in 42.1% of the litters and the mummification risk was 3.4%. The potential risk factors were included in multivariable logistic regression models as categories: herd (1–4); parity (1, 2–5 and >5); litter size (<10, 10–12 and >12 piglets); farrowing length (≤3 or >3 h); presence of mummified foetuses (yes or no); farrowing induction (yes or no); use of oxytocin (yes or no); use of vaginal palpation (yes or no); body condition score (<3, 3 and ≥4), and placental production index (PPI) (≤5 or >5) which was measured as the ratio of total foetal weight to total placental weight. Duration of farrowing and use of farrowing induction, oxytocin or vaginal palpation were not included in the model that investigated the risk factors of foetal mummification. Two models were used to investigate the risk factors of stillbirth, one with and the other without the inclusion of farrowing length. When compared to sows of parity 2–5, sows of parity >5 had 1.7- and 1.6-times higher odds (P < 0.05) for stillbirth in the models with and without the inclusion of farrowing length, respectively. In both models, sows with more than 12 piglets/litter had 3.6-times higher odds of stillbirth occurrence compared to sows with less than 10 piglets (P < 0.05). Sows with prolonged farrowing (>3 h) had 2.0-times higher odds of stillbirth occurrence than sows with short farrowing (P < 0.05). Sows with more than 12 piglets/litter had 14.5-times higher odds of mummification compared to sows with less than 10 piglets (P < 0.05). Sows of parities 1 and >5 had 3.5- and 2.0-times, respectively, higher odds of mummification in comparison to sows of parity 2–5 (P < 0.05). Sows with low PPI had 1.7-times higher odds of mummification compared to those with high PPI (P < 0.05). A large litter, a high-parity and a prolonged farrowing increased the risk of stillbirth. The probability of having a mummified foetus was increased in very young and older sows, when having a large litter and a litter with a less efficient placenta.     

Supplementary feeding with thermally treated cereals in common carp (<Emphasis Type="Italic">Cyprinus carpio</Emphasis> L.) pond farming and its effects on water quality,nutrient budget and zooplankton and zoobenthos assemblages

To test the influence of supplementary feeding with thermally treated cereals on nutrient budget and environmental and biotic variables, three different treatments were applied in four experimental ponds: two with thermally treated cereals, one with raw cereal and a control with no supplementary feeding. Water parameters, zooplankton and zoobenthos were analysed from May to October over two consecutive years (2012 and 2013). In addition, nitrogen and phosphorus budgets were calculated as the difference between input (feed, stocked fish) and output (harvested fish). The results showed that type of supplementary feed had no influence on water quality, aside from water transparency. Ponds with added thermally treated cereal had significantly (P < 0.05) lower turbidity and suspended solids (and increased Secchi depth) compared with control. While no significant differences were observed in zooplankton assemblages between the experimental ponds and the control, macrozoobenthos density and biomass were considerably lower in the control pond. High seasonal fluctuations resulted in significant differences in density in 2012 only. The use of thermally treated cereal led to improved carp growth and nutrient budget, with an increase in carp yield and nutrient removal per hectare of pond surface. This result is a win–win situation with 10 % lower feed conversion ratio, increased profits and lower environmental impact.