Oxygen-mediated diffusion of oxygen vacancies on the TiO2(110) surface

Defects such as oxygen vacancies play a crucial role in the surface properties of transition metal oxides. By means of time-resolved, high-resolution scanning tunneling microscopy, we unraveled an adsorbate-mediated diffusion mechanism of oxygen vacancies on rutile TiO2(110). Adsorbed oxygen molecules mediate vacancy diffusion through the loss of an oxygen atom to a vacancy and the sequential capture of an oxygen atom from a neighboring bridging oxygen row, leading to an anisotropic oxygen vacancy diffusion pathway perpendicular to the bridging oxygen rows.     

Interstitial collagenase is a Brownian ratchet driven by proteolysis of collagen

We show that activated collagenase (MMP-1) moves processively on the collagen fibril. The mechanism of movement is a biased diffusion with the bias component dependent on the proteolysis of its substrate, not adenosine triphosphate (ATP) hydrolysis. Inactivation of the enzyme by a single amino acid residue substitution in the active center eliminates the bias without noticeable effect on rate of diffusion. Monte Carlo simulations using a model similar to a "burnt bridge" Brownian ratchet accurately describe our experimental results and previous observations on kinetics of collagen digestion. The biological implications of MMP-1 acting as a molecular ratchet tethered to the cell surface suggest new mechanisms for its role in tissue remodeling and cell-matrix interaction.     

Protein conformational dynamics probed by single-molecule electron transfer

Electron transfer is used as a probe for angstrom-scale structural changes in single protein molecules. In a flavin reductase, the fluorescence of flavin is quenched by a nearby tyrosine residue by means of photo-induced electron transfer. By probing the fluorescence lifetime of the single flavin on a photon-by-photon basis, we were able to observe the variation of flavin-tyrosine distance over time. We could then determine the potential of mean force between the flavin and the tyrosine, and a correlation analysis revealed conformational fluctuation at multiple time scales spanning from hundreds of microseconds to seconds. This phenomenon suggests the existence of multiple interconverting conformers related to the fluctuating catalytic reactivity.     

Remote sensing assessment of regional yield losses due to sub-optimal planting dates and fallow period weed management

New tools in agricultural research are needed for improved assessment of agronomic practices and their impacts on crop production. Remote sensing data acquired by satellite sensors offers great promise to complement field-based approaches, which generally suffer from small sample sizes. In this study, we used Landsat data from the Yaqui Valley, a prominent spring wheat (Triticum aestivum L.) growing region in Northwest Mexico, to investigate the effect of planting date and fallow period weeds on wheat yields. Three crops cycles were analyzed for the planting date study, while 2 years were investigated for the weed study.     

The use of a microbial contact toxicity test for evaluating cadmium bioavailability in soil

Background, Aims and Scope

Bioavailability of toxic compounds in soil can be defined as the fraction able to come into contact with biota and to cause toxic effects. The contact toxicity tests may detect the total toxic response of all bioavailable contaminants present in a sample. The objectives of this study were to evaluate the use of microbial contact toxicity tests for cadmium bioavailability assessment and to evaluate the relationship between sorption, soil characteristics and cadmium bioavailability.

Methods

A test soil bacterium,Bacillus cereus, was put in direct contact with the solid sample. Four unpolluted soils were selected to provide solid samples with a variety of physicochemical characteristics. The toxicity and sorption behaviour of cadmium spiked to the soil samples were determined.

Results, Discussion and Conclusions

A significant correlation between contact toxicity test results and partitioning of cadmium in the soil samples (r²= 0.79, p <0.05; n = 26) was found. The results confirm that the bioavailability of cadmium in soil depends on its sorption behaviour. Cadmium sorbed to the cation exchange sites associated with fulvic acids is non-bioavailable in the toxicity test employed in this study. It is concluded that the microbial contact toxicity test is a suitable tool for detecting cadmium bioavailablity in the soils used in this study.

Outlook

The application of microbial contact toxicity tests for bioavailability assessment can be very useful for the risk identification and remediation of soil-associated contaminants.     

Target Spot Control and Modulation of the Physiology in Cucumber Using Phosphites and Chitosan

Phosphites and chitosan were evaluated in target spot control, nutrition and gas exchange in cucumbers. Three weekly sprayings of commercial products were conducted, and Corynespora cassiicola (causal agent of target spot) was inoculated in the second and third true leaves four days after the last spraying. Zn, Mn, K and Cu phosphites reduced the disease severity, but the treatments had no effect on the development of the plants and the accumulation of macronutrients in the above ground part, with the exception of sulfur. The accumulation of Cu, Mn and Zn micronutrients were higher in plants treated with Cu, Mn and Zn phosphites, respectively. The green color index was influenced by the treatments after pathogen inoculation, with the highest values for Zn and Cu phosphites. Before inoculation, the products influenced net CO₂ assimilation rate (A), stomatal conductance (g_s) and internal CO₂ concentration (C_i). The parameters g_s and C_i increased, which indicates that the treatments can physiologically benefit the plants in the absence of a stress condition. After fungal inoculation, the Cu, Mn and Zn phosphites caused positive physiological effects, leading to the highest A values and adequate carboxylation efficiency (CE), which increases the capacity of plants to assimilate CO₂. These phosphites also maintained adequate water use efficiency and g_s and C_i values. Such indexes corresponded to lower disease severity, indicating that Mn, Zn and Cu phosphites reduced the stress caused by the disease, preserving the functionality of the photosynthetic apparatus.

     

Low variability of flower volatiles of Rosa damascena Mill. plants from rose plantations along the Rose Valley, Bulgaria

The composition of volatile compounds in the rose essential oils obtained from the rose flowers has been known to be affected by a number of factors including the region of rose growing. The variations of the flower volatile composition of Rosa damascena plants growing in 11 different rose plantations along the famous Rose Valley in Bulgaria were studied following GC/MS metabolite profiling. ANOVA statistical test revealed that only 14 of a total of 90 identified compounds were significantly influenced by the geographic location of the sampled rose plantation. The hierarchical clustering analysis based on the subset of these 14 compounds revealed no clear correlation between the levels of rose flower volatiles and geographic location of the studied rose plantations. The results from the study suggest low variability of rose flower volatiles accumulation and elevated plasticity of the common R. damascena genotype industrially cultivated in the Rose Valley.