Influence of water quality,local knowledge and river–floodplain connectivity on commercial wild crayfish harvesting in the Atchafalaya River Basin

Water quality and river connectivity influence fisheries, but their role is not understood in wild crayfish harvest, or how water quality and river connectivity are incorporated into crayfish harvest strategies. In Louisiana, wild harvesting practices were evaluated with field observations and interviews with individual harvesters. Field observations included trap locations, water quality, water stable isotopes (2016) and habitat components over two seasons (2015 and 2016). Traps were set in less turbid water (NTU < 69.4), in depths from 1 to 3 m or 3 to 3.6 m and in locations associated with river water inputs. Harvester interviews indicated the importance of tradition (35%‐47% respondents), depth (88% respondents) and water colour (>40% respondents; a surrogate for turbidity and connectivity) in harvesting initiation and trap locations. Harvesters appeared to follow lateral water movements onto and within the floodplain, likely based on local environmental knowledge.     

A methodology for assessing the risk posed by the deliberate and harmful use of plant pathogens in Europe

Deliberate and malevolent use of plant pathogens, i.e. agroterrorism lato sensu (anticrop bioterrorism and use of bioweapons against the agricultural sector), may represent a non-negligible threat for crops and forests in Europe. In order to assess this risk objectively, a methodology based on a critical review of existing Pest Risk Analysis schemes has been elaborated and is described in the present paper. In this methodology, three interdependent steps are suggested: (i) definition of an a priori list of potentially dangerous plant pathogens for Europe, (ii) detailed elaboration and analysis of theoretical scenarios of possible acts of agroterrorism, and (iii) elaboration and use of a risk assessment scheme adapted to agroterrorism.     

The phylogeny of marine and freshwater species of the genus Chloromyxum Mingazzini, 1890 (Myxosporea: Bivalvulida) based on small subunit ribosomal RNA gene sequences

The small subunit ribosomal RNA gene (SSU rDNA) of two freshwater and one marine species of the genus Chloromyxum Mingazzini, 1890 were sequenced. The SSU rDNA trees obtained show the phylogenetic position of the marine species Chloromyxum leydigi Mingazzini, 1890 to be at the base of the freshwater clade, being well supported by a high bootstrap value. Chloromyxum cyprini Fujita, 1927 is closely related to Chloromyxum truttae Léger, 1906 and they represent a sister branch to raabeia sp., Myxidium sp. and Myxidium truttae Léger, 1930. Chloromyxum legeri Tourraine, 1931 is in a position ancestral to Myxidium lieberkuehni Bútschli, 1882 and Sphaerospora oncorhynchi Kent, Whitaker et Margolis, 1993. Three newly sequenced species of the genus Chloromyxum represent three separate lineages within the myxosporean tree and do not support the monophyly of this genus.     

First record of metacestodes of Mesocestoides sp. in the common starling (Sturnus vulgaris) in Europe, with an 18S rDNA characterisation of the isolate

Metacestodes of Mesocestoides sp. were recorded from Sturnus vulgaris (Passeriformes: Stumidae) in the Czech Republic in April 2002. They were found in a cutaneous cyst and in the thoracic region of the body cavity of the bird. This is the first record of metacestodes of Mesocestoides sp. in this host species in Europe as well as the first finding of the formation of a cutaneous cyst provoked by this parasite. Additional specimens from Apodemus agrarius (Mammalia: Rodentia) from Bulgaria and Lacerta agilis (Reptilia: Squamata) from the Czech Republic were compared with that from S. vulgaris. Sequence data from the V4 variable region (18S rDNA) were used to compare genetic variability among these and previously characterized isolates of Mesocestoides spp. A number of distinct clades were recognized, with metacestodes from L. agilis showing the highest degree of relative divergence.     

Impact of solar activity on the growth of pine trees: case study

In this work, we focus on the analysis of data for the ring width of two pine tree species: samples of six maritime pines (Pinus pinaster), grown in the north of Portugal, and one sample of Scots pine (Pinus sylvestris), grown in the south of Slovakia. A negative impact of solar activity (SA) was observed on the growth of these pine trees with particularly strong impact in the case of the maritime pines. The width of the annual rings was generally smaller in the years of maximum SA; furthermore, it was found that it is latewood width that is affected whereas earlywood width is not affected; as a corollary, the percentage of latewood also shows a significative negative correlation with SA.     

A rabbit model of non-typhoidal Salmonella bacteremia

Bacteremia is an important cause of morbidity and mortality in humans. In this study, we focused on the development of an animal model of bacteremia induced by non-typhoidal Salmonella. New Zealand White rabbits were inoculated with a human isolate of non-typhoidal Salmonella strain CVD J73 via the intra-peritoneal route. Blood samples were collected at specific time points and at euthanasia from infected rabbits. Additionally, tissue samples from the heart, lungs, spleen, gastrointestinal tract, liver and kidneys were obtained at euthanasia. All experimentally infected rabbits displayed clinical signs of disease (fever, dehydration, weight loss and lethargy). Tissues collected at necropsy from the animals exhibited histopathological changes indicative of bacteremia. Non-typhoidal Salmonella bacteria were detected in the blood and tissue samples of infected rabbits by microbiological culture and real-time PCR assays. The development of this animal model of bacteremia could prove to be a useful tool for studying how non-typhoidal Salmonella infections disseminate and spread in humans.     

Elementary structural motifs in a random network of cytosine adsorbed on a gold(111) surface

Nonsymmetrical organic molecules adsorbed on solid surfaces may assemble into random networks, thereby providing model systems for organic glasses that can be directly observed by scanning tunneling microscopy (STM). We investigated the structure of a disordered cytosine network on a gold(111) surface created by thermal quenching, to temperatures below 150 K, of the two-dimensional fluid present on the surface at room temperature. Comparison of STM images to density functional theory calculations allowed us to identify three elementary structural motifs (zigzag filaments and five- and six-membered rings) that underlie the whole supramolecular random network. The identification of elementary structural motifs may provide a new framework for understanding medium-range order in amorphous and glassy systems.     

Stress-induced mutagenesis in bacteria

The evolutionary significance of stress-induced mutagenesis was evaluated by studying mutagenesis in aging colonies (MAC) of Escherichia coli natural isolates. A large fraction of isolates exhibited a strong MAC, and the high MAC variability reflected the diversity of selective pressures in ecological niches. MAC depends on starvation, oxygen, and RpoS and adenosine 3',5'-monophosphate regulons; thus it may be a by-product of genetic strategies for improving survival under stress. MAC could also be selected through beneficial mutations that it generates, as shown by computer modeling and the patterns of stress-inducible and constitutive mutagenesis. We suggest that irrespective of the causes of their emergence, stress-induced mutations participate in adaptive evolution.     

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

Nonhuman primates represent the most relevant model organisms to understand the biology of Homo sapiens. The recent divergence and associated overall sequence conservation between individual members of this taxon have nonetheless largely precluded the use of primates in comparative sequence studies. We used sequence comparisons of an extensive set of Old World and New World monkeys and hominoids to identify functional regions in the human genome. Analysis of these data enabled the discovery of primate-specific gene regulatory elements and the demarcation of the exons of multiple genes. Much of the information content of the comprehensive primate sequence comparisons could be captured with a small subset of phylogenetically close primates. These results demonstrate the utility of intraprimate sequence comparisons to discover common mammalian as well as primate-specific functional elements in the human genome, which are unattainable through the evaluation of more evolutionarily distant species.