Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment

Dried soil samples from many sources have been stored in archives world-wide over the years, but there has been little research on their value for studying microbial populations. Samples collected since 1843 from the Broadbalk field experiment on crop nutrition at Rothamsted have been used to document changes in the structure and composition of soils as agricultural practices evolve, also offering an invaluable record of environmental changes from the pre- to post-industrial era in the UK. To date, the microbial communities of these soils have not been studied, in part due to the well-documented drop in bacterial culturability in dried soils. However, modern molecular methods based on PCR amplification of DNA extracted directly from soil do not require bacterial cells to be viable or intact and may allow investigations into the legacy of bacteria that were present at the time of sample collection.

In a preliminary study, to establish if dried soils can provide a historical record of bacterial communities, samples from the Broadbalk soil archive dating back to 1868 were investigated and plots treated with either farmyard manure (FYM) or inorganic fertilizer (NPK) were compared. As anticipated, the processes of air-drying and milling greatly reduced bacterial viability whilst DNA yields declined less and may be preserved by desiccation. A higher proportion of culturable bacteria survived the archiving process in the FYM soil, possibly protected by the increased soil organic matter. The majority of surviving bacteria were firmicutes, whether collected in 2003 or in 1914, but a wide range of genera was detected in DNA extracted from the samples using PCR and DGGE of 16S rRNA genes. Analysis of DGGE band profiles indicated that the two plots maintained divergent populations. Sequence analysis of bands excised from DGGE gels, from a sample collected in 1914, revealed DNA from - and β-proteobacteria as well as firmicutes. PCR using primers specific for ammonia oxidizing bacteria showed similar band profiles across the two treatments in recently collected samples, however older samples from the NPK plot showed greater divergence. Primers specific for the genus Pseudomonas were designed and used in real-time quantitative PCR to indicate that archived soil collected in 1868 contained 10-fold less pseudomonad DNA than fresh soil, representing around 10⁵ genomes g⁻¹ soil. Prior to milling, dramatically less pseudomonad DNA was extracted from recently collected air-dried soil from the NPK compared to the FYM plot; otherwise, the two plots followed similar trends. Overall bacterial abundance, diversity and survival during the archiving process differed in the two soils, possibly due to differences in clay and soil organic matter content. Nevertheless, the results demonstrate that air-dried soils can protect microbial DNA for more than 150 years and offer an invaluable resource for future research.     

Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities

If soil communities rely on plant-derived carbon, is biodiversity lost when this primary source is removed? Soil microbial and mesofaunal communities at the Rothamsted Highfield site were compared under a mixed grass sward, arable rotation and a section maintained as a bare-fallow for the past 50 years by regular tillage. Organic matter reserves have been degraded and microbial and mesofaunal numbers and mite diversity have declined in this unique bare-fallow site, where fresh carbon inputs have been drastically reduced. However, it supports a species-rich metabolically active bacterial community of similar diversity to that in soil maintained as grass sward. Thus in contrast to soil mesofauna, bacterial diversity (but not abundance) is apparently independent of plant inputs.     

Plant carbon inputs and environmental factors strongly affect soil respiration in a subtropical forest of southwestern China

Soil respiration is a large component of global carbon fluxes, so it is important to explore how this carbon flux varies with environmental factors and carbon inputs from plants. As part of a long-term study on the chemical and biological effects of aboveground litterfall denial, root trenching and tree-stem girdling, we measured soil respiration for three years in plots where those treatments were applied singly and in combination. Tree-stem girdling terminates the flow of carbohydrates from canopy, but allows the roots to continue water and nutrient uptake. After carbon storage below the stem girdles is depleted, the girdled trees die. Root trenching immediately terminates root exudates as well as water and nutrient uptake. Excluding aboveground litterfall removes soil carbon inputs, but allows normal root functions to continue. We found that removing aboveground litterfall and the humus layer reduced soil respiration by more than the C input from litter, a respiration priming effect. When this treatment was combined with stem girdling, root trenching or those treatments in combination, the change in soil respiration was indistinguishable from the loss of litterfall C inputs. This suggests that litterfall priming occurs only when normal root processes persist. Soil respiration was significantly related to temperature in all treatment combinations, and to soil water content in all treatments except stem girdling alone, and girdling plus trenching. Aboveground litterfall was a significant predictor of soil respiration in control, stem-girdled, trenched and stem-girdled plus trenching treatments. Stem girdling significantly reduced soil respiration as a single factor, but root trenching did not. These results suggest that in addition to temperature, aboveground carbon inputs exert strong controls on forest soil respiration.     

卫星遥感技术在林火管理与研究中的应用(英文)

卫星遥感已经成为森林火险等级预测、可燃物和火烧区制图、林火监测和火生态研究的一个主要数据来源。本文综述了这些研究领域的研究成果,分析了未来林火管理中采用的卫星遥感技术的发展趋势。根据卫星遥感数据制取的可燃物分布图可以满足林火管理在空间和时间尺度上的需要。单独采用遥感数据或结合地面气象数据可以生成一些火险指数,用于森林火险的预报。目前NOAA 和MODIS 卫星由于有高的时间分辨率已被广泛用于林火探测和监测,这些监测结果可以在许多林火网站上见到,这为世界各地的林火管理和研究提供了重要的参考资料。作为低成本的有效工具, 卫星遥感技术在确定火烧面积和过火区制图上发挥了重要作用。遥感技术的发展也可以用来推断火烧时间和估计火烧程度。卫星遥感也非常适合用来估计生物燃烧面积,这是估计全球或区域生物燃烧排放量和理解火对全球变化的影响的基础。本文还讨论了林火研究中采用的卫星类型。文章最后建议中国需要在卫星遥感技术的应用上进一步发展,提高我国的林火管理水平。参71。     

Ecology and management of earthworm casting on sports turf

Earthworm activity is beneficial in most natural and agricultural systems, but excessive earthworm casting is a problem on sports fields worldwide. Expulsion of soil‐rich earthworm fecal matter, or casts, as mounds of soil on the turf canopy can muddy the surface, reduce photosynthesis, and lead to thinning, weed invasion and surface softening. Casts affect ball roll on sports fields, cause fouling of maintenance equipment, and dull mower blades. Build‐up of cast material on reel mower units can affect height and quality of cut. Casting activity is dependent on environmental conditions such as soil texture, temperature, moisture, pH, and organic matter. Response to environmental conditions varies by species. Management options are limited, because no pesticides are specifically labeled for earthworm control at this time, and cultural control methods such as soil modification, turfgrass clipping removal, and sand topdressing have limited and inconsistent efficacy. Products containing plant‐derived saponins and irritants show promise for earthworm management. Pest management practices to mitigate excessive earthworm casting will likely need to be species‐specific, but limited knowledge of earthworm identification by end‐users further inhibits the efficacy of control measures. © 2019 Society of Chemical Industry     

Seasonal speedup along the western flank of the Greenland Ice Sheet

It has been widely hypothesized that a warmer climate in Greenland would increase the volume of lubricating surface meltwater reaching the ice-bedrock interface, accelerating ice flow and increasing mass loss. We have assembled a data set that provides a synoptic-scale view, spanning ice-sheet to outlet-glacier flow, with which to evaluate this hypothesis. On the ice sheet, these data reveal summer speedups (50 to 100%) consistent with, but somewhat larger than, earlier observations. The relative speedup of outlet glaciers, however, is far smaller (<15%). Furthermore, the dominant seasonal influence on Jakobshavn Isbrae's flow is the calving front's annual advance and retreat. With other effects producing outlet-glacier speedups an order of magnitude larger, seasonal melt's influence on ice flow is likely confined to those regions dominated by ice-sheet flow.     

Bilateral anterior segment dysgenesis in a 7-week-old domestic shorthaired cat

A 7-week-old, intact, female domestic shorthaired cat was presented to the Atlantic Veterinary College (AVC) Ophthalmology service for a 1-week history of buphthalmia in the left eye and bilateral elevated intraocular pressures. Ocular examination revealed bilateral non-visual glaucomatous eyes. Bilateral enucleations were performed without complications and histopathology revealed anterior segment dysgenesis of varying degrees in both eyes.Key clinical message:Anterior segment dysgenesis is a developmental condition that can result in primary congenital glaucoma for which the best course of treatment is enucleation.