Ecological conservation and the restoration of freshwater environments in Korea

In this study, we aim to construct and apply a simple genetic algorithm (SGA) to optimize a large number of parameters of an one-box ecosystem model. The ecosystem model was used to simulate the water quality over a 6-month period based on the new observation data in an agricultural pond which was strongly influenced by a green algal bloom. Of the 54 parameters in this model, 10 important parameters were initially selected for the optimization, with one other parameter being subsequently added. The SGA program was used for three purposes, namely (1) to narrow the search space for the 10 parameters, (2) to assess the influence of the additional parameter on the optimization results, and (3) to observe the distribution and convergence of the optimized values for the 10 selected parameters. In the next step, new ranges for these 10 important parameters were assigned and the SGA was applied to all 54 model parameters to seek the optimum value for each parameter. The modeling approach and the results presented here provide valuable and reliable evidences of the optimum parameters for further simulations to clarify the mechanisms of the biochemical processes in the water.     

Patient-specific embryonic stem cells derived from human SCNT blastocysts

Patient-specific, immune-matched human embryonic stem cells (hESCs) are anticipated to be of great biomedical importance for studies of disease and development and to advance clinical deliberations regarding stem cell transplantation. Eleven hESC lines were established by somatic cell nuclear transfer (SCNT) of skin cells from patients with disease or injury into donated oocytes. These lines, nuclear transfer (NT)-hESCs, grown on human feeders from the same NT donor or from genetically unrelated individuals, were established at high rates, regardless of NT donor sex or age. NT-hESCs were pluripotent, chromosomally normal, and matched the NT patient's DNA. The major histocompatibility complex identity of each NT-hESC when compared to the patient's own showed immunological compatibility, which is important for eventual transplantation. With the generation of these NT-hESCs, evaluations of genetic and epigenetic stability can be made. Additional work remains to be done regarding the development of reliable directed differentiation and the elimination of remaining animal components. Before clinical use of these cells can occur, preclinical evidence is required to prove that transplantation of differentiated NT-hESCs can be safe, effective, and tolerated.     

A short Fe-Fe distance in peroxodiferric ferritin: control of Fe substrate versus cofactor decay?

The reaction of oxygen with protein diiron sites is important in bioorganic syntheses and biomineralization. An unusually short Fe-Fe distance of 2.53 angstroms was found in the diiron (mu-1,2 peroxodiferric) intermediate that forms in the early steps of ferritin biomineralization. This distance suggests the presence of a unique triply bridged structure. The Fe-Fe distances in the mu-1, 2 peroxodiferric complexes that were characterized previously are much longer (3.1 to 4.0 angstroms). The 2.53 angstrom Fe-Fe distance requires a small Fe-O-O angle (approximately 106 degrees to 107 degrees). This geometry should favor decay of the peroxodiferric complex by the release of H2O2 and mu-oxo or mu-hydroxo diferric biomineral precursors rather than by oxidation of the organic substrate. Geometrical differences may thus explain how diiron sites can function either as a substrate (in ferritin biomineralization) or as a cofactor (in O2 activation).     

Reversing the inactivation of peroxiredoxins caused by cysteine sulfinic acid formation

The active-site cysteine of peroxiredoxins is selectively oxidized to cysteine sulfinic acid during catalysis, which leads to inactivation of peroxidase activity. This oxidation was thought to be irreversible. However, by metabolic labeling of mammalian cells with 35S, we show that the sulfinic form of peroxiredoxin I, produced during the exposure of cells to H2O2, is rapidly reduced to the catalytically active thiol form. The mammalian cells' ability to reduce protein sulfinic acid might serve as a mechanism to repair oxidatively damaged proteins or represent a new type of cyclic modification by which the function of various proteins is regulated.     

Role of the Arabidopsis glucose sensor HXK1 in nutrient,light, and hormonal signaling

Glucose modulates many vital processes in photosynthetic plants. Analyses of Arabidopsis glucose insensitive2 (gin2) mutants define the physiological functions of a specific hexokinase (HXK1) in the plant glucose-signaling network. HXK1 coordinates intrinsic signals with extrinsic light intensity. HXK1 mutants lacking catalytic activity still support various signaling functions in gene expression, cell proliferation, root and inflorescence growth, and leaf expansion and senescence, thus demonstrating the uncoupling of glucose signaling from glucose metabolism. The gin2 mutants are also insensitive to auxin and hypersensitive to cytokinin. Plants use HXK as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.     

Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1

Cells of the monocyte-macrophage lineage are targets for human immunodeficiency virus-1 (HIV-1) infection in vivo. However, many laboratory strains of HIV-1 that efficiently infect transformed T cell lines replicate poorly in macrophages. A 20-amino acid sequence from the macrophage-tropic BaL isolate of HIV-1 was sufficient to confer macrophage tropism on HTLV-IIIB, a T cell line--tropic isolate. This small sequence element is in the V3 loop, the envelope domain that is the principal neutralizing determinant of HIV-1. Thus, the V3 loop not only serves as a target of the host immune response but is also pivotal in determining HIV-1 tissue tropism.     

An inverse compton process for the excess diffuse EUV emission from the virgo and coma galaxy clusters

The excess extreme-ultraviolet (EUV) emission detected in the Virgo and Coma clusters is explained by inverse Compton scattering of cosmic microwave background photons, which are scattered by the relativistic electrons that account for the extended radio synchrotron emission of these clusters. The lower limits of the average magnetic fields of these clusters estimated from the EUV excess are close to the equipartition magnetic fields derived from radio observations, indicating that the electron energies and magnetic field energies might be close to equipartition. The excess emission suggests energy reservoirs of approximately 10(61) and approximately 10(60) ergs for the Coma and Virgo clusters, respectively.