Genotype by Environment Interaction in Nordic Dairy Cattle Studied Using Reaction Norms

Genotype by environment interaction for production and fertility was studied by use of a reaction norm model. Milk recording data, comprising 927 929 records, were analysed to predict reaction norms for young bulls of the Nordic Red dairy breeds. Random regressions were estimated for each bull, regressing phenotypic values of daughters on herd environment. The phenotypic measures were 305 days kg protein production and days open in first lactation. The herd environment was defined as the herd-year average of protein production and days open, respectively. Heritability of protein production and days open and genetic correlation between the two traits were estimated as functions of the herd environment. The results showed that the genetic parameters change over environments, which are measured on a continuous scale across countries. Grouping of observations is avoided and thereby the problem of genetic connectedness between groups or countries may be avoided. Although significant genetic variation for the slope of the reaction norm was found, there was little reranking of sires, except between extreme environments. More appropriate models and methods need to be developed for further studies of genetic variation in reaction norms.     

Cytogenetic and FMS-like tyrosine kinase 3 mutation analyses in acute promyelocytic leukemia patients

Background: The secondary genetic changes other than the promyelocytic leukemia-retinoic acid receptor (PML-RARA) fusion gene may contribute to the acute promyelocytic leukemogenesis. Chromosomal alterations and mutation of FLT3 (FMS-like tyrosine kinase 3) tyrosine kinase receptor are the frequent genetic alterations in acute myeloid leukemia. However, the prognostic significance of FLT3 mutations in acute promyelocytic leukemia (APL) is not firmly established. Methods: In this study, the chromosomal abnormalities were analyzed by bone marrow cytogenetic in 45 APL patients and FLT3 internal tandem duplications (ITD) screening by fragment length analysis and FLT3 D835 mutation by melting curve analysis were screened in 23 APL samples. Results: Cytogenetic study showed 14.3% trisomy 8 and 17.1% chromosomal abnormalities other than t(15;17). About 13% of the patients had FLT3 ITD, and 26% had D835 point mutation. FLT3 ITD mutation was associated with higher white blood cell count at presentation and poor prognosis. Conclusion: The PML-RARA translocation alone may not be sufficient to induce leukemia. Therefore, we assume that FLT3 mutations and the other genetic and chromosomal alterations may cooperate with PML-RARA in the development of APL disease.Key Words: Chromosome aberrations, FMS-like tyrosine kinase 3, Acute promyelocytic leukemia     

The role of Ile3434Thr XRCC7 gene polymorphism in Differentiated Thyroid Cancer risk in an Iranian population

Background

The aim of this study was to understand any association between differentiated thyroid carcinoma (DTC) and Ile3434Thr XRCC7 gene polymorphism (GenBank accession number: rs7830743). DTC is the most prevalent thyroid neoplasm, which includes papillary and follicular cell carcinoma. XRCC7 gene encodes a protein that functions in non-homologous end joining DNA repair pathway. Non-synonymous polymorphisms in this gene may alter DNA repair capacity of the cell and change the risk of developing cancers.

Methods

DTC patients (n = 173) and cancer free individuals (n = 204) were enrolled in a case-control study. The Ile3434Thr polymorphic alleles were discriminated by using amplification refractory mutation system-PCR method. The frequencies of this single nucleotide polymorphism in case and control groups were compared. Also, risk ratio for developing DTC in dichotomized genotypes was estimated by multivariate logistic regression analysis.

Results

Dichotomized genotypes into those with and without the 3434Thr allele showed that this allele was associated with DTC (OR [odd ratio]: 1.89, 95% confidence interval (CI) = 1.29-2.79, P<0.001). Also, TC genotype was significantly associated with increased risk of DTC (OR: 2.42, 95% CI = 1.55-3.81, P = 0.0001) in individuals carrying this genotype.

Conclusion

Allele 3434Thr in XRCC7 gene might be associated with differentiated thyroid cancer risk. Further studies with larger samples are needed to verify these initial findings. Key Words: DNA repair enzymes, Thyroid neoplasms, Genetic polymorphism     

Effects of foliar spray of two kinds of zinc oxide on the growth and ion concentration of sunflower cultivars under salt stress

This study investigated the effects of foliar application of normal and nano-sized zinc oxide on the response of sunflower cultivars to salinity. Treatments included five cultivars (‘Alstar’, ‘Olsion’, ‘Yourflor’, ‘Hysun36’ and ‘Hysun33’), two salinity levels [0 and 100 mM sodium chloride (NaCl)], and three levels of fertilizer application. Fertilizer treatments were the foliar application of normal and nano-sized zinc oxide (ZnO). Foliar application of ZnO in either forms increased leaf area, shoot dry weight, net carbon dioxide (CO₂) assimilation rate (A), sub-stomatal CO₂ concentration (Ci), chlorophyll content, Fv/Fm, and Zn content and decreased Na content in leaves. The extent of increase in chlorophyll content, Fv/Fm and shoot weight was greater as nano-sized ZnO was applied to the normal form. The results show that the nano-sized particles of ZnO compared to normal form has greater effect on biomass production of sunflower plants.     

The effectiveness of seed priming with synthetic zinc-amino acid chelates in comparison with soil-applied ZnSO4 in improving yield and zinc availability of wheat grain

The effect of soil applied zinc (Zn) sulfate and seed priming with Zn-glutamine [Zn(Gln)₂], Zn-glycine [Zn(Gly)₂], Zn-arginine [Zn(Arg)₂], and Zn-histidine [Zn(His)₂] on yield and grain nutritional quality of two bread (Triticum aestivum L. cvs. Back Cross and Kavir) and a durum wheat genotype (Triticum durum L. cv. Durum) was investigated. Seed priming with [Zn(Gly)₂] and [Zn(Gln)₂] increased grain yield of wheat over soil applied Zn-sulfate treatment by 46 and 14%, respectively. Seed priming with [Zn(Gln)₂], [Zn(Arg)₂], and [Zn(His)₂] significantly increased grain protein content of wheat in comparison with control treatment. Seed priming with [Zn(Arg)₂] and [Zn(His)₂] resulted in higher Zn and Fe accumulation in wheat grain as compared with the other Zn treatments. Priming seeds with [Zn(Arg)₂] reduced phytic acid to Zn molar ratio of wheat grain. Seed priming with [Zn(Arg)₂] and [Zn(His)₂] might be used as an alternative approach for soil application of Zn-sulfate to overcome Zn deficiency in calcareous soils.     

Subcritical soil hydrophobicity in the presence of native and exotic arbuscular mycorrhizal species at different soil salinity levels

Soil salinity and arbuscular mycorrhizal fungi (AMF) influence the soil hydrophobicity. An experiment was performed to determine the effects of soil salinity and AMF species on soil water repellency (SWR) under wheat (Triticum aestivum L.) crop. Six AMF treatments, including four exotic species (Rhizophagus irregularis, Funneliformis mosseae and Claroideoglomus claroideum, a mix of three species), one mix native AMF species treatment and an AMF-free soil in combination with four salinity levels (1, 5, 10, and 15 dS m^?1) were used. The soil repellency index (RI) increased with salinity increment ranging from 2.4 to 10.5. The mix of three exotic and native AMF treatments enhanced the RI significantly compared to AMF-free soil in all salinity levels with one exception for native treatment at 1 dS m^?1. Among individual AMF species, the C. claroideum treatment at 10 dS m^?1 increased the RI by 67% compared to AMF-free soil. The native AMF treatment was more efficient in root colonization, glomalin production and SWR development at 10 and 15 dS m^?1, compared to exotic species. In addition to the net positive effect of salinity on SWR, the AMF influences on the RI were greatly dependent on salinity levels.     

Modeling hydrogen peroxide bleaching to predict optical properties of bleached hardwood CMP

Due to the variations in opacity and brightness of peroxide bleached pulp at Mazandaran Wood and Paper Industries Company (MWPI), empirical models were developed to predict chemimechanical pulp (CMP) brightness and opacity from peroxide bleaching conditions and to drive the optimum operating conditions. To overcome the inconsistency problem, a multi-variate regression analysis method was used for model building. The models were then validated using a new data set from the bleach plant at MWPI, assessing the models’ predictive ability and performance. The results show that there is a relationship between bleaching variables and such dependent variables as pulp brightness and opacity. In addition to the hydrogen peroxide charge and pulp initial brightness, the initial opacity had a significant reverse effect on the final CMP brightness. It was also found that the concentration of total Na⁺ in the CMP tower was the most important variable affecting the final pulp opacity. The validation results demonstrated that these models can be employed as useful tools for process optimization purposes.     

The potential contribution of siderophore producing bacteria on growth and Fe ion concentration of sunflower (Helianthus annuus L.) under water stress

In the present study, 100 bacterial strains were isolated from the soil and tested for siderophore producing ability. Among siderophore producing bacteria, three superior isolates with the highest level of siderophore (F13, F58 and F66) selected for further study. Production of lecithinase, arginine dehydrolase, catalase, oxidase, hydrogen cyanide, indole acetic acid, solubilization of phosphate, gelatin hydrolysis, oxidative/fermentative, motility and gram staining by these strains was evaluated. In greenhouse experiment, the ability of selected isolates in solubilizing insoluble iron-containing compounds was examined at three moisture levels (0.45–0.6, 0.6–0.7 and 0.7–0.85 field capacity). Results showed that isolates F13 and F66 have greatest effects on chlorophyll amount and shoot dry weight compared to isolate F58. On average, iron concentration of sunflower in the presence of bacteria was 2.85-fold more than control, while it was 1.88-fold for roots. In addition, bacterial treatments enhanced resistance to water stress in sunflower. Based on biochemical tests and by comparison of 16S rRNA sequences, the F13, F58 and F66 isolates were closely related to Pseudomonas spp., Enterobacter spp. and Bacillus Sporothernodurans, respectively.     

Korean <Emphasis Type="Italic">Brassica oleracea</Emphasis> germplasm offers a novel source of qualitative resistance to blackleg disease

Blackleg disease, caused by the hemibiotrophic fungal pathogen Leptosphaeria maculans, is one of the most devastating disease of Brassica species worldwide. To date, a total of 20 race-specific blackleg resistance (R) genes have been reported and all of those loci are located in either the A or B genomes of various Brassica species. The B. oleracea genome (CC) shares a high ancestral synteny with the A genome of B. rapa, suggesting the presence of qualitative (race specific) resistance to blackleg disease is also possible in B. oleracea germplasm. In the present study the C genome of Korean B. oleracea germplasm was screened for the presence of blackleg R genes. Thirty-two inbred cabbage lines with unknown resistance profiles, along with five control B. napus lines with well-characterised race-specific R genes, were assessed for cotyledon resistance against two L. maculans isolates with known and highly-contrasting avirulence gene (Avr) profiles. Two cabbage accessions were identified which produced a strong resistance when challenged with either isolate, demonstrating the presence of effective blackleg R genes in the cabbage C genome. Additionally, 16 microsatellite markers linked to seven different R genes of the B. napus A genome were converted into markers for their homologous regions on the B. oleracea C genome. These markers were used to screen all B. oleracea lines to assess if the novel C genome R genes were syntenous to known R gene-homologous regions of the A genome. The resistant cabbage lines offer C genome R genes for the protection of B. oleracea varieties against incursion of blackleg disease, as well as novel additional resistance sources for introgression into B. napus and B. carinata breeding material.     

Nutritional status of Washington Navel orange orchards in arid lands of southern Iran

Nutrient deficiency may be a reason for citrus decline in many countries. In the current investigation, soil and leaf samples of 63 Washington Navel orange orchards in arid lands of southern Iran (Darab region) were analyzed to study the nutritional status of orange orchards and to find relationships between soil properties and nutrients content of soils and orange leaves. The soils differed widely in clay content (3–37%), pH value (7.04–7.95), calcium carbonate equivalent (18–86%), and organic matter content (0.3–12%). These soils represented a wide range of plant nutrients concentration. Majority of the studied soils had sufficient concentrations of all nutrients (except Fe). Results indicated that pH, organic matter, clay, and calcium carbonate contents are the most important characteristics that control the soil nutrients availability. The mean contents of N, K, P, Fe, Mn, Zn, and Cu in leaves were 2.59, 0.84, and 0.14% and 66, 44, 17, and 12?mg?kg^?1, respectively. Most orchards showed K, Fe, and Zn deficiencies. We found no relationships between nutrients content in leaf and soil (except for K, Mn, and Zn); and this indicated that soil analysis may not be a reliable method for most nutrient deficiency diagnosis.