Tools for optimizing management of spatially-variable fields

Efficient use of agro-chemicals is beneficial for farmers as well as for the environment. Spatial and temporal optimization of farm management will increase productivity or reduce the amount of agro-chemicals. This type of management is referred to as Precision Agriculture. Traditional management implicitly considers any field to be a homogeneous unit for management: fertilization, tillage and crop protection measures, for example, are not varied within a single field. The question for management is what to do when. Because of the variability within the field, this implies inefficient use of resources. Precision agriculture defines different management practices to be applied within single, variable fields, potentially reducing costs and limiting adverse environmental side effects. The question is not only what and when but also where. Many tools for management and analysis of spatial variable fields have been developed. In this paper, tools for managing spatial variability are demonstrated in combination with tools to optimize management in environmental and economic terms. The tools are illustrated on five case studies ranging from (1) a low technology approach using participatory mapping to derive fertilizer recommendations for resource-poor farmers in Embu, Kenya, (2) an example of backward modelling to analyze fertilizer applications and restrict nitrogen losses to the groundwater in the Wieringermeer in The Netherlands, (3) a low-tech approach of precision agriculture, developed for a banana plantation in Costa Rica to achieve higher input use efficiency and insight in spatial and temporal variation, (4) a high-tech, forward modelling approach to derive fertilizer recommendations for management units in Zuidland in The Netherlands, and (5) a high-tech, backward modelling approach to detect the relative effects of several stress factors on soybean yield.     

Modelling the effect of El Niño on the persistence of small populations: The Galápagos penguin as a case study

Small populations are vulnerable to long-term declines, even where short-term censuses indicate increasing trends in numbers. Census data for the Galápagos penguin (Spheniscus mendiculus) collected between 1970 and 2004 provide evidence that despite year-to-year population increases detected in most of the annual censuses, the strong El Niño events of 1982-83 and 1997-98 were followed by population declines of more than 60% from which the species has yet to recover. Such large declines raise concerns about the future viability of the species because the frequency and severity of El Niño events are predicted to increase. We used the simulation software VORTEX to evaluate the potential effects of El Niño on the risk of extinction of the Galápagos penguin population and its four constituent subpopulations. Weak and strong El Niño events were treated as catastrophes, with varying frequencies, which simulated past, current and future effects on the penguin population. The “Current El Niño” scenario, based on the frequency of El Niño events recorded in the Galápagos between 1965 and 2004, indicated an approximately 30% probability of extinction within the next 100 years for the penguin population. More ominously, the species may be at a greater risk if the frequency of strong El Niño episodes increases only marginally. A probability of extinction greater than 80% was predicted when the current frequency (5%) of strong El Niño events was doubled (to 10%). The probabilities of extinctions were higher for each subpopulation treated individually, ranging from 34% for Isabela and Fernandina, 64% for Bartolomé-Santiago to 78% for the smallest subpopulation on Floreana. Sensitivity analyses identified survival of penguins during El Niño events and sex ratio as influential parameters. The estimates of extinction risk may be conservative as other threats associated with increased human activities on the islands may further compromise species persistence.     

A description of the growth and moulting of feathers in commercial broilers

ABSTRACT

1. Changes in feather length and weight and daily losses of down, contour feathers, remiges and retrices were studied in two commercial broiler strains to determine feather growth and moult in broilers up to 112 d of age.

2. Ten pens of 20 chicks for each sex x strain were fed adequate amounts of dietary protein in a four-phase feeding programme. Ten birds were sampled per genotype at 14, 28, 42, 56, 70, 84, 98 and 112 d. Feather loss was determined for individual birds caged within a nylon net.

3. All feathers were dry-plucked from each of seven tracts, with representative feathers from the capital-cervical, dorsopelvic and interscapular, pectoral and femoral tracts being randomly selected. Three rectrices of the dorsocaudal tract and three primaries and secondaries of the humeral-alar tract of the right wing were evaluated.

4. The length of the selected feathers was measured, and the feathers from each tract and from the whole bird were weighed.

5. A wide range of rates of maturing (0.0250–0.0907/d) and mature weights (9.62–52.9 g) were evident between sampled tracts.

6. Feather weight failed to predict some moults which were detected by the measurement of feather losses. From the weight data, moulting was evident only in the humeral-alar and dorsocaudal tracts, whereas, when daily losses were measured, contour feathers accounted for over 0.7 proportion of feather losses. Logistic equations adequately described the cumulative losses of down, contour feathers and remiges.

7. Feather loss needs to be considered when feather growth is determined from feather weight at different ages.

8. The rate of maturing (B) of feathers was numerically higher in Ross males and females than in the Cobb strain. In females, B was higher than in males (0.0483 vs. 0335/d) but the mature weight was lower (162 vs. 230 g).     

Relationship between reproductive and productive traits in Holstein cattle using multivariate analysis

Multivariate procedures are used for the extraction of variables from the correlation matrix of phenotypes in order to identify those traits that explain the largest proportion of phenotypic variation and to evaluate the relationship structure between these traits. The reproductive traits (days from calving to first estrus [CFE], days from calving to last service [CLS], calving interval [CI] and gestation length [GL]) and milk production traits (milk yield at 305 days of lactation [MY305], peak yield [PY] and milk yield per day of calving interval [MYCI]) of 5,217 Holstein females (primiparous and multiparous) were measured. Principal component analysis (PCA) and factor analysis of the correlation matrix were used to estimate the correlation between traits. Analysis grouped the seven traits into three principal components and four latent factors that retained approximately 81.5% and 88.9% of the total variation of the data, respectively. The production variables exhibited positive phenotypic correlation coefficients of high magnitude (>.67). The phenotypic correlation estimates between the productive and reproductive traits were low, ranging from .13 to .22. A strong association (.99) was observed between CLS and CI. Our results indicate that multivariate analysis was effective in generating correlations between the traits studied, grouping the seven traits in a smaller number of variables that retained approximately 81% of the total variation of the data.     

Competitiveness of Rhizobium leguminosarum bv. phaseoli strains in relation to environmental stress and plant defense mechanisms

Summary Six Rhizobium leguminosarum bv. phaseoli strains (Ciat 151, Ciat 895, Ciat 899, CE3, H2C, Kim5s) were tested for nodule occupancy in different bean cultivars at two field sites (one fertile, one acid tropical soil) and in the greenhouse. The effects of several environmental factors such as low pH, high temperature, Al and Mn toxicity, iron deficiency, bean tannins, and bean phytoalexins were tested in vitro. Strain Kim5s was competitive under all tested conditions while strains CE3 and H2C had consistently low nodule occupancy levels. Strain Ciat 151 was superior to the other inoculant strains in the acid soil but competed poorly in the fertile soil. Strain Ciat 895 was more competitive in the fertile soil. There was a decline in nodule occupancy for all strains tested from the first trifoliate leaf stage to the pod-filling stage. No plant genotype effect on nodule occupancy was observed. There were significant (P<0.05) plant genotype and location effects, but no significant strain effect on acetylene reduction activity, plant dry weight, and nodule number. The greenhouse experiments confirmed, at least partially, the results from the field trials. In Leonard jars with an acid soil, strains Ciat 151 and Kim5s were amongst the most competitive strains. In coinoculation experiments, Kim5s was the most competitive strain, followed by Ciat 899 and Ciat 895. The competitiveness of a given strain was affected by the coinoculant strain. Tolerance in vitro to low pH, high growth temperature, Al or Mn toxicity, or Fe limitation was not related to competitiveness of the inoculum strains. The sensitivity of the strains towards bean tannins or bean phytoalexins also was not correlated with their competitiveness.     

Plasma concentrations resulting from florfenicol preparations given to pigs in their drinking water

Florfenicol administered through the drinking water has been recommended as a metaphylactic antibacterial drug to control outbreaks of respiratory diseases in pigs caused by strains of Actinobacillus pleuropneumoniae and Pasteurella multocida, yet it is difficult to pinpoint in practice when the drug is given metaphylactically or therapeutically. Further, pigs are likely to reject florfenicol-medicated water, and plasma concentrations of the drug are likely to be marginal for diseases caused by Escherichia coli, Klebsiella pneumoniae, and Staphylococcus aureus. The reported minimal inhibitory concentration (MIC) values for these organisms show a breakpoint of 2 to 3 μg/mL. An experiment was conducted during September and October 2009. One hundred twenty healthy crossbred pigs (Landrace-Yorkshire), weighing 23 ± 6.2 kg, were used in this trial. They were randomly assigned to 5 groups, with 3 replicates of 8 animals/group. Two commercial preparations of florfenicol were administered through the drinking water at 2 concentrations (0.01 and 0.015%). Water intake was measured before and after medication, and plasma concentrations of florfenicol were determined by HPLC. Considerable rejection of florfenicol-medicated water was observed. However, plasma florfenicol concentrations were of a range sufficient for a methaphylaxis approach to preventing disease by bacteria, with MIC breakpoints of ≤ 0.25 μg/mL. Decreased efficacy as a metaphylactic medication should be expected for bacteria with MIC >0.25 μg/mL, considering the reported existence of bacteria resistant to florfenicol and the natural resistance of Streptococcus suis or E. coli to this drug.     

Hg, Cu, Pb, Cd, and Zn Accumulation in Macrophytes Growing in Tropical Wetlands

The concentrations of Hg, Cu, Pb, Cd, and Zn accumulated by regional macrophytes were investigated in three tropical wetlands in Colombia. The studied wetlands presented different degrees of metal contamination. Cu and Zn presented the highest concentrations in sediment. Metal accumulation by plants differed among species, sites, and tissues. Metals accumulated in macrophytes were mostly accumulated in root tissues, suggesting an exclusion strategy for metal tolerance. An exception was Hg, which was accumulated mainly in leaves. The ranges of mean metal concentrations were 0.035?C0.953 mg g^?1 Hg, 6.5?C250.3 mg g^?1 Cu, 0.059?C0.245 mg g^?1 Pb, 0.004?C0.066 mg g^?1 Cd, and 31.8?363.1 mg g^?1 Zn in roots and 0.033?C0.888 mg g^?1 Hg, 2.2?C70.7 mg g^?1 Cu, 0.005?C0.086 mg g^?1 Pb, 0.001?C0.03 mg g^?1 Cd, and 12.6?C140.4 mg g^?1 Zn in leaves. The scarce correlations registered between metal concentration in sediment and plant tissues indicate that metal concentrations in plants depend on several factors rather than on sediment concentration only. However, when Cu and Zn sediment concentrations increased, these metal concentrations in tissues also increased in Eichhornia crassipes, Ludwigia helminthorriza, and Polygonum punctatum. These species could be proposed as Cu and Zn phytoremediators. Even though macrophytes are important metal accumulators in wetlands, sediment is the main metal compartment due to the fact that its total mass is greater than the corresponding plant biomass in a given area.     

Past,present and future of wild ungulates in relation to changes in land use

In recent decades, Mediterranean landscapes have been experiencing more rapid changes in land use than usual, which have affected the ecology of the species inhabiting this biodiversity hotspot. Some studies have assessed the effect of such changes on biodiversity, but most of these were diachronic studies of population dynamics, or synchronic studies of species habitat selection, whereas few studies have simultaneously taken into account temporal changes in habitat composition and changes in species distribution. This study analysed the effects of land-use changes on the distribution of wild ungulates (Capreolus capreolus, Capra pyrenaica, Cervus elaphus and Sus scrofa). Using favourability function and Markov chain analysis combined with cellular automata, we addressed the following objectives: (i) to examine the environmental determinants of ungulate distribution in the past (1960s) and present (1990s), (ii) to model land use for 2040 to forecast future species distributions and (iii) to assess the biogeographical differences between the above-mentioned study periods (past–present and present–future). Species favourability was predicted to be more widely distributed in the present than in the past, but this increase varied across species. Areas predicted to be favourable in the present should remain stable in the future, but in addition there will be more new favourable areas not previously occupied by these species. The results are discussed from the perspective of the socio-economic relevance of wild ungulates in relation to some unfavourable areas of Mediterranean regions.     

Effects of feeding systems on social and feeding behavior and performance of finishing pigs

Two experiments were conducted to study the effects of feeding systems on feeding behavior, aggression, social ranks and average daily gain (ADG) of pigs. In Exp. 1, feed was delivered during the day from 1100 to 1400 and at night from 2300 to 0200. One pen containing 10 barrows and 10 gilts was used. Correlation coefficients were calculated between pairs of traits. In Exp. 2, four feeding systems were tested using similar group composition as in Exp. 1. Two feeding systems were ad libitum, offering either dry or wet feed; the other two used time-restricted feeding from 0900 to 1100 and from 1600 to 1800, but with water supplied either ad libitum or time-restricted. Analyses of variance were used to test feeding system effects; correlation coefficients were calculated for pairs of traits. Results of Exp. 1 indicated that pigs displayed predominantly daytime activities. Frequency of aggressive acts were correlated significantly with feeding frequency (r = .48), time to first feeding (r = -.50) and ADG (r = .56). In Exp. 2, pigs on time-restricted feeding with ad libitum water had significantly depressed ADG and reduced feed intake. A possible association between time-restricted feeding and water intake is postulated. Feeding behavior, aggression and social rank were associated with ADG in time-restricted systems but not in ad libitum systems. There was a tendency in time-restricted-fed pigs for the more aggressive pigs to perform more feeding activities, to rank higher in the social order, and to gain faster.     

Wild potato (Solanum sect.Petota) germplasm collecting expedition to Mexico in 1993, with special reference toSolanum bulbocastanum Dunal andS. cardiophyllum Lindley

Summary A joint Mexico/United States expedition collected wild potato (Solanum sect.Petota) germplasm in Mexico between August 1–31, 1993. The purpose of the expedition was to expand germplasm and herbarium collections ofS. bulbocastanum andS. cardiophyllum. Collections were made from west-central to southern Mexico, and comprised 19 true seed and 37 tuber collections (45 collections in total) of 9 species and two putative natural hybrids.