Interactive responses to water deficits and crop load in olive (Olea europaea L., cv. Morisca). II: Water use, fruit and oil yield

To understand the relations between water use and yield in response to crop load, two experiments were conducted in olive (cv. Morisca), during six consecutive years (2002-2007) in an experimental orchard located in Badajoz, Southwest Spain. Experiment 1, assessed the responses during the early years of the orchard (2002-2004) using four irrigation treatments that applied fractions of the estimated crop evapotranspiration (ET_c) (125%, 100%, 75% and 0%) and three crop load levels (100%, 50% and 0% of fruit removal, termed Off, Medium and On treatments). Experiment 2 assessed the response of more mature trees (2005-2007) to three irrigation treatments (115%, 100%, and 60% of ET_c) and the natural crop load which were Off, On, and Medium in 2005, 2006 and 2007, respectively. Yield was reduced by water deficits and so did the estimated tree transpiration which was linearly related to yield (y = 1.2302x − 21.15, R² = 0.8864), showing the high sensitivity of cultivar Morisca to water deficits. The relations between fruit number and fruit weight showed that high crop loads had lower fruit weights and oil yield, a decrease that was more pronounced as water deficits increased. The yield response to water supply in the control and excess treatments, and the observations on the water relations of these two treatments suggest that the calculations made using the FAO method (Doorenbos and Pruit, 1974) with the crop coefficient proposed by Pastor et al. (1998) and the reduction coefficient (Fereres et al., 1982) to apply 100% of ET_c in the control treatment, underestimated the ET_c of the orchard. The results indicate that, although the absence of fruits lead to reduced water use as compared to situations of medium and high crop loads, canopy size was much more determinant of orchard water requirements than crop load.     

The Breakdown of Olivine to Perovskite and Magnesiowustite

San Carlos olivine crystals under laboratory conditions of 26 gigapascals and 973 to 1473 kelvin (conditions typical of subducted slabs at a depth of 720 kilometers) for periods of a few minutes to 19 hours transformed to the phase assemblage of perovskite and magnesiowustite in two stages: (i) the oxygen sublattice transformed into a cubic close-packed lattice, forming a metastable spinelloid, and (ii) at higher temperatures or longer run durations, this spinelloid broke down to perovskite and magnesiowustite by redistributing silicon and magnesium while maintaining the general oxygen framework. The breakdown was characterized by a blocking temperature of 1000 kelvin, below which olivine remained metastable, and by rapid kinetics once the reaction was activated.     

Inactivation of TNF signaling by rationally designed dominant-negative TNF variants

Tumor necrosis factor (TNF) is a key regulator of inflammatory responses and has been implicated in many pathological conditions. We used structure-based design to engineer variant TNF proteins that rapidly form heterotrimers with native TNF to give complexes that neither bind to nor stimulate signaling through TNF receptors. Thus, TNF is inactivated by sequestration. Dominant-negative TNFs represent a possible approach to anti-inflammatory biotherapeutics, and experiments in animal models show that the strategy can attenuate TNF-mediated pathology. Similar rational design could be used to engineer inhibitors of additional TNF superfamily cytokines as well as other multimeric ligands.     

The protein kinase complement of the human genome

We have catalogued the protein kinase complement of the human genome (the "kinome") using public and proprietary genomic, complementary DNA, and expressed sequence tag (EST) sequences. This provides a starting point for comprehensive analysis of protein phosphorylation in normal and disease states, as well as a detailed view of the current state of human genome analysis through a focus on one large gene family. We identify 518 putative protein kinase genes, of which 71 have not previously been reported or described as kinases, and we extend or correct the protein sequences of 56 more kinases. New genes include members of well-studied families as well as previously unidentified families, some of which are conserved in model organisms. Classification and comparison with model organism kinomes identified orthologous groups and highlighted expansions specific to human and other lineages. We also identified 106 protein kinase pseudogenes. Chromosomal mapping revealed several small clusters of kinase genes and revealed that 244 kinases map to disease loci or cancer amplicons.     

A protein sensor for siRNA asymmetry

To act as guides in the RNA interference (RNAi) pathway, small interfering RNAs (siRNAs) must be unwound into their component strands, then assembled with proteins to form the RNA-induced silencing complex (RISC), which catalyzes target messenger RNA cleavage. Thermodynamic differences in the base-pairing stabilities of the 5' ends of the two approximately 21-nucleotide siRNA strands determine which siRNA strand is assembled into the RISC. We show that in Drosophila, the orientation of the Dicer-2/R2D2 protein heterodimer on the siRNA duplex determines which siRNA strand associates with the core RISC protein Argonaute 2. R2D2 binds the siRNA end with the greatest double-stranded character, thereby orienting the heterodimer on the siRNA duplex. Strong R2D2 binding requires a 5'-phosphate on the siRNA strand that is excluded from the RISC. Thus, R2D2 is both a protein sensor for siRNA thermodynamic asymmetry and a licensing factor for entry of authentic siRNAs into the RNAi pathway.     

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism

Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for approximately 20% of global carbon fixation. We report the 34 million-base pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand-base pair mitochondrial genomes. Sequence and optical restriction mapping revealed 24 diploid nuclear chromosomes. We identified novel genes for silicic acid transport and formation of silica-based cell walls, high-affinity iron uptake, biosynthetic enzymes for several types of polyunsaturated fatty acids, use of a range of nitrogenous compounds, and a complete urea cycle, all attributes that allow diatoms to prosper in aquatic environments.