Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils

The extent of microbial community diversity in two similar sandy surface soils from Virginia and Delaware (USA) was analysed with a culture-independent small subunit ribosomal RNA (SSU rRNA) gene-based cloning approach with about 400-700 SSU rDNA clones obtained from each sample. While there were no operational taxonomic units (OTUs) having more than three individuals, about 96-99% of the OTUs had only a single individual. The clones showing less than 85% similarity to the sequences in the current databases were fully sequenced. The majority of the clones (55%) had sequences that were more than 20% different from those in the current databases. About 37% of the clones differed by 15-20% in sequence from the database, 16% of the clones differed by 10-15%, and 5% of the clones differed by only 1-10%. Phylogenetic analysis indicated that these sequences fell into 10 of the 35-40 known phylogenetic divisions. Many of the clones were affiliated with Acidobacterium (35%). While a substantial portion of the clones belong to alpha (24%) and beta (12%) Proteobacteria, a few of them were affiliated with delta (6%) and gamma (3%) Proteobacteria. About 6% of the clones belong to Planctomycetes, and 4% of the clones were related to gram-positive bacteria. About 4% of clones were related to other bacterial divisions, including Cytophaga, Green sulfur bacteria, Nitrospira, OP10, and Verrucomicrobia. Eight sequences had no specific association with any of the known divisions or candidate divisions and were phylogenetically divided into three novel division level groups, named AD1, AD2 and AD3. Candidate division AD1 represented by six clones (4%) was found in both sites and consisted of two subdivisions. The community structures were similar between these two widely separated, sandy, oligotrophic, surface soils under grass vegetation in a temperate, humid climate but somewhat dissimilar to community structures revealed in similar studies in other types of soil habitats.     

The faculty of language: what is it,who has it,and how did it evolve?

We argue that an understanding of the faculty of language requires substantial interdisciplinary cooperation. We suggest how current developments in linguistics can be profitably wedded to work in evolutionary biology, anthropology, psychology, and neuroscience. We submit that a distinction should be made between the faculty of language in the broad sense (FLB) and in the narrow sense (FLN). FLB includes a sensory-motor system, a conceptual-intentional system, and the computational mechanisms for recursion, providing the capacity to generate an infinite range of expressions from a finite set of elements. We hypothesize that FLN only includes recursion and is the only uniquely human component of the faculty of language. We further argue that FLN may have evolved for reasons other than language, hence comparative studies might look for evidence of such computations outside of the domain of communication (for example, number, navigation, and social relations).     

A new population of very high energy gamma-ray sources in the Milky Way

Very high energy gamma-rays probe the long-standing mystery of the origin of cosmic rays. Produced in the interactions of accelerated particles in astrophysical objects, they can be used to image cosmic particle accelerators. A first sensitive survey of the inner part of the Milky Way with the High Energy Stereoscopic System (HESS) reveals a population of eight previously unknown firmly detected sources of very high energy gamma-rays. At least two have no known radio or x-ray counterpart and may be representative of a new class of "dark" nucleonic cosmic ray sources.     

Computational constraints on syntactic processing in a nonhuman primate

The capacity to generate a limitless range of meaningful expressions from a finite set of elements differentiates human language from other animal communication systems. Rule systems capable of generating an infinite set of outputs ("grammars") vary in generative power. The weakest possess only local organizational principles, with regularities limited to neighboring units. We used a familiarization/discrimination paradigm to demonstrate that monkeys can spontaneously master such grammars. However, human language entails more sophisticated grammars, incorporating hierarchical structure. Monkeys tested with the same methods, syllables, and sequence lengths were unable to master a grammar at this higher, "phrase structure grammar" level.     

Non-invasive measurement of the cardiovascular effects of chronic hypoxaemia on dogs living at moderately high altitude

Pulmonary hypertension is a well-recognised condition in dogs, and, among other mechanisms, is caused by hypoxia. In order to evaluate the effect of chronic hypobaric hypoxia on pulmonary arterial pressure in dogs, a colony of 19 clinically and biochemically healthy Greenland sled dogs living permanently at at least 2300 m above sea level (altitude dogs) and 10 clinically healthy Greenland sled dogs living at 700 to 900 m above sea level (control dogs) were examined. Investigations were made of the dogs' packed-cell volume, venous and arterial blood gases, electrocardiogram, blood pressure and echocardiograph, including the calculation of pulmonary arterial pressure by Doppler examination of tricuspid regurgitation. The altitude dogs had a marked arterial hypoxaemia with a mean (sd) oxygen partial pressure of 61.9 (7.4) mmHg and a significantly lower arterial oxygen saturation (90.7 [3.7] per cent) than the control dogs (96.7 [0.8] per cent). In eight of the altitude dogs, tricuspid regurgitation allowed calculation of the systolic pulmonary arterial pressure, which was 29.5 (10.4) mmHg. Eight of the control dogs had tricuspid insufficiency, and their derived systolic pulmonary arterial pressure was significantly lower (17.4 [3.9] mmHg).     

Use of a low dose prostaglandin F2 alpha in bitches

The dosage of Prostaglandin F2 alpha used until the present (100, 250 and 1000 micrograms/kg bw), in order to treat pyometra in the bitch, was accompanied with side effects such as salivation, vomiting and diarrhea. In the present work, the efficiency of low dose Prostaglandin (20 micrograms/kg bw) was examined in two different groups of patients: Group 1: Included 9 bitches pregnant for a period of 5-7 weeks duration. Initially the bitches were treated 3 or 4 times per day with Prostaglandin F2 alpha. In these cases abortion took place within 4 to 11 days. Group 2: 12 dogs, suffering from pyometra, were treated 3 times per day with PGF2 alpha for 8 days. In 9 dogs the pyometra resolved and the bitches came in estrus 2-5 months after treatment. 7 bitches have been mated and 6 of these gave birth to healthy litters. During a follow-up period of at least 10 months there has not been a reoccurrence of pyometra. In 3 out of the 12 dogs the uteri were still enlarged after 8 days of treatment. These bitches underwent ovariohysterectomy and a cystic hyperplasia of the endometrium was diagnosed histologically. The low dose (20 micrograms/kg BW) Prostaglandin F2 alpha induced in all dogs the expulsion of the uterine contents. Side effects during the treatment were not observed.     

Nitrogen and phosphorus uptake by maize as affected by particulate organic matter quality, soil characteristics, and land-use history for soils from the West African moist savanna zone

 The impact of land use (unfertilized continuous maize cropping, unfertilized and fertilized alley cropping with maize, Gliricidia sepium tree fallow, natural fallow) on the soil organic matter (SOM) status and general soil fertility characteristics were investigated for a series of soils representative for the West African moist savanna zone. Three soils from the humid forest zone were also included. In an associated pot experiment, relationships between maize N and P uptake and SOM and general soil characteristics were developed. Soils under natural fallow contained the highest amount of organic C (1.72%), total N (0.158%), and had the highest effective cation exchange capacity (ECEC) [8.9 mEq 100 g^–1 dry soil], while the Olsen P content was highest in the fertilized alley cropping plots (13.7 mg kg^–1) and lowest under natural fallow (6.3 mg kg^–1). The N concentration of the particulate organic matter (POM) was highest in the unfertilized alley cropping plots (2.4%), while the total POM N content was highest under natural fallow (370 mg N kg^–1) and lowest in continuously cropped plots (107 mg N kg^–1). After addition of all nutrients except N, a highly significant linear relationship (R ²=0.91) was observed between the total N uptake in the shoots and roots of 7-week-old maize and the POM N content for the savanna soils. POM in the humid forest soils was presumably protected from decomposition due to its higher silt and clay content. After addition of all nutrients except P, the total maize P uptake was linearly related to the Olsen P content. R ² increased from 0.56 to 0.67 in a multiple linear regression analysis including the Olsen P content and clay content (which explained 11% of the variation in P uptake). Both the SOM status and N availability were shown to be improved in land-use systems with organic matter additions, while only the addition of P fertilizer could improve P availability. Received: 9 April 1999     

Biomass production and N fixation of five Mucuna pruriens varieties and their effect on maize yields in the forest zone of Cameroon

Mucuna has been tested intensively in past years as green manure for intensive maize production in West Africa. However, information is missing about the yield effect of different existing mucuna varieties. Five Mucuna pruriens varieties were grown for 40 weeks followed by sole maize (Zea mays L.) in order to determine differences in biomass production, nitrogen fixation, and effects on maize yield. Mucuna varieties differed in length of growing period, total biomass production (5.9—8.8 Mg ha^—1), seed production (0.65—1.3 Mg ha^—1), nitrogen (N) uptake (147—222 kg ha^—1), N fixation (87—171 kg ha^—1), and the amount of N retained in residues (138—218 kg ha^—1). The grain yield of maize grown immediately after the short mucuna fallow was significantly higher after mucuna vars. jaspaeda (4.60 Mg ha^—1), utilis (3.49 Mg ha^—1), and cochinchinensis (3.44 Mg ha^—1), compared with a non‐fertilized control (1.93 Mg ha^—1) which had a maize crop and vegetation regrowth before. After mucuna vars. ghana and veracruz, 2.90 and 2.65 Mg ha^—1 of maize grain were produced, respectively. No significant correlation between mucuna biomass and its N uptake and maize grain yield was found, whereas maize stover yield showed a significant positive correlation. Application of 30, 60, and 90 kg ha^—1 N as <?tw=98%>urea on sub‐plots of the control yielded 2.20, 3.19, and 3.46 Mg ha^—1 <?tw>of maize grain in the first year. Only the difference between 0 and 90 kg ha^—1 N was significant. Fertilizer N equivalent values for mucuna varieties ranged from 41 to 148 kg ha^—1. The yield advantage of vars. jaspaeda, utilis, and cochinchinensis versus the control without N fertilizer application was confirmed in the following year, with no significant difference in maize grain yield between mucuna and the control with N fertilizer application.<?show $6#>     

Conservation of migratory fishes in the Amazon basin

1. The Amazon basin hosts the Earth's highest diversity of freshwater fish. Fish species have adapted to the basin's size and seasonal dynamics by displaying a broad range of migratory behaviour, but they are under increasing threats; however, no study to date has assessed threats and conservation of Amazonian migratory fishes.
2. Here, the available knowledge on the diversity of migratory behaviour in Amazonian fishes is synthesized, including the geographical scales at which they occur, their drivers and timing, and life stage at which they are performed.
3. Migratory fishes are integral components of Amazonian society. They contribute about 93% (range 77–99%) of the fisheries landings in the basin, amounting to ~US$436 million annually.
4. These valuable fish populations are mainly threatened by growing trends of overexploitation, deforestation, climate change, and hydroelectric dam development. Most Amazonian migratory fish have key ecological roles as apex predators, ecological engineers, or seed-dispersal species. Reducing their population sizes could induce cascading effects with implications for ecosystem stability and associated services.
5. Conserving Amazonian migratory fishes requires a broad portfolio of research, management, and conservation actions, within an ecosystem-based management framework at the basin scale. This would require trans-frontier coordination and recognition of the crucial importance of freshwater ecosystems and their connectivity.
6. Existing areas where fishing is allowed could be coupled with a chain of freshwater protected areas. Management of commercial and subsistence species also needs fisheries activities to be monitored in the Amazonian cities and in the floodplain communities to allow assessments of the status of target species, and the identification of management units or stocks. Ensuring that existing and future fisheries management rules are effective implies the voluntary participation of fishers, which can be achieved by increasing the effectiveness and coverage of adaptive community-based management schemes.

     

Toxic effects seen in a herd of beef cattle following exposure to ash residues contaminated by lead and mercury

Lead poisoning was diagnosed in three cattle along with increased mercury levels in the liver and kidney tissues of two of these animals. The clinical signs were different in each case and included salivation, anorexia, delayed menace response, delayed withdrawal reflex, head pressing, localized muscle fasciculation, reduced tongue tone, ataxia, rumen atony and seizures. Blood lead concentration was increased in all three cases to 0.76, 0.37 and 0.454ppm. Post mortem changes characteristic of lead poisoning were only recognized in one case and included cerebro-cortical oedema, cortical neuronal necrosis and endothelial proliferation, especially at the tips of the cerebral gyri. The animals were poisoned by ingestion of lead-contaminated ash residues from a bonfire. The abnormal levels of mercury in the liver and kidney tissues of two animals may also be at least partly attributable to the intake of the metal in the ash residues. The levels of mercury in the three samples from the ash residue were relatively low (1.31, 0.7 and 2.1ppm).