The Endo-α(1,3)-Fucoidanase Mef2 Releases Uniquely Branched Oligosaccharides from Saccharina latissima Fucoidans

Fucoidans are complex bioactive sulfated fucosyl-polysaccharides primarily found in brown macroalgae. Endo-fucoidanases catalyze the specific hydrolysis of α-L-fucosyl linkages in fucoidans and can be utilized to tailor-make fucoidan oligosaccharides and elucidate new structural details of fucoidans. In this study, an endo-α(1,3)-fucoidanase encoding gene, Mef2, from the marine bacterium Muricauda eckloniae, was cloned, and the Mef2 protein was functionally characterized. Based on the primary sequence, Mef2 was suggested to belong to the glycosyl hydrolase family 107 (GH107) in the Carbohydrate Active enZyme database (CAZy). The Mef2 fucoidanase showed maximal activity at pH 8 and 35 °C, although it could tolerate temperatures up to 50 °C. Ca²⁺ was shown to increase the melting temperature from 38 to 44 °C and was furthermore required for optimal activity of Mef2. The substrate specificity of Mef2 was investigated, and Fourier transform infrared spectroscopy (FTIR) was used to determine the enzymatic activity (Units per μM enzyme: U_f/μM) of Mef2 on two structurally different fucoidans, showing an activity of 1.2 × 10⁻³ U_f/μM and 3.6 × 10⁻³ U_f/μM on fucoidans from Fucus evanescens and Saccharina latissima, respectively. Interestingly, Mef2 was identified as the first described fucoidanase active on fucoidans from S. latissima. The fucoidan oligosaccharides released by Mef2 consisted of a backbone of α(1,3)-linked fucosyl residues with unique and novel α(1,4)-linked fucosyl branches, not previously identified in fucoidans from S. latissima.     

电子自旋共振波谱技术在辐照葡萄检测中的应用

为了应用电子自旋共振（ESR）波谱技术检测辐照葡萄,以葡萄皮、葡萄柄和葡萄籽为试验材料,研究其在0～10.0 kGy剂量范围ESR波谱特征变化以及辐照剂量与信号强度的关系。结果表明： 葡萄皮、葡萄柄和葡萄籽辐照后ESR波谱均有明显的区别,信号强度均随辐照剂量增加而增大。葡萄柄的辐照剂量检出限最低（0.25 kGy）,是鉴定葡萄样品是否经过辐照的理想材料。通过比较葡萄皮、葡萄柄和葡萄籽剂量效应曲线得出葡萄柄拟合曲线最为准确（R2=0.9943）。3种辐照试验材料在贮藏期（15 d）内信号强度均有不同程度的衰减,辐照葡萄皮信号强度衰减最为剧烈（衰减80%）。研究结果为ESR波谱技术在辐照葡萄检测中的应用提供了技术依据。     

Analysis of ITS of the rDNA to infer phylogenetic relationships among Vietnamese Citrus accessions

This study focused on clarifying phylogenetic relationships among Citrus accessions from Vietnam. Our phylogenetic analysis based on nucleotide sequences from the ITS of the ribosomal DNA included 69 accessions belonging to Citrus and related (sub)genera. Maximum parsimony and Bayesian analysis confirmed a clear separation of the three ‘true’ Citrus species (C. medica, C. maxima and C. reticulata). Confirming recent taxonomic revisions, Fortunella, Poncirus trifoliata and Citrus hystrix are clustered among the accessions of subgenus Citrus. C. × sinensis accessions revealed a close evolutionary relationship to either C. maxima or C. reticulata, thereby confirming their involvement in its hybrid origin. Also, some other hybrid taxa and their proposed parental species were investigated and their origin could in some cases be confirmed using the ITS sequence data.     

Slow-binding inhibition of soybean lipoxygenase-1 by dodecyl gallate

Dodecyl gallate inhibited the soybean lipoxygenase-1 (EC 1.13.11.12, type-1) catalyzed peroxidation of linoleic acid with an IC50 of 0.007 microM without being oxidized. The progress curves for enzyme reactions were recorded by both spectrophotometric and polarographic methods, and the inhibition kinetics revealed competitive and slow-binding inhibition. Both the initial velocity and steady-state rate in the progress curve decreased with increasing dodecyl gallate. The kinetic parameters that described the inhibition by dodecyl gallate were evaluated by nonlinear regression fits.     

The commercial exploitation of a protected anadromous species,the river lamprey (Lampetra fluviatilis (L.)), in the tidal River Ouse,north‐east England

• 1. Throughout Europe, populations of anadromous fish and lampreys have declined over the past centuries due to human activities. River lamprey Lampetra fluviatilis are representative of such species and are listed in international conservation agreements.
• 2. Historic (1908–09 to 1913–14) and modern (1995–96 to 2003–04) data were available on commercial catches of river lampreys in the tidal Ouse, north‐east England. During 2003–04, additional traps were operated by the University of Durham, downstream of the commercial fishery.
• 3. Catch per unit effort (CPUE) in the modern commercial fishery showed considerable variation between fishing seasons, ranging from a median CPUE of 0.5 lampreys per trap per day in 2000–01 to a median of 22.3 lampreys per trap per day in 2003–04.
• 4. The estimated catch of adult river lampreys each season in the historic fishery ranged between 25 500 (1913–14) and 54 500 (1910–11). Recent catches tended to be smaller, with a minimum catch of 9083 lampreys (2000–01) and a maximum of 30 992 lampreys (2003–04).
• 5. CPUE increased with discharge, up to a point above which CPUE declined with further increase in discharge. Migratory activity may be reduced at high flows and not stimulated at low flows, although the fishing efficiency of the traps themselves was probably reduced during high flows.
• 6. Samples of river lampreys caught in the university's traps were marked and released. Based upon the number of recaptures, the absolute minimum relative exploitation level of the commercial traps, over the whole fishing season, was estimated as 9.9%. The effect of such a reduction in the spawning population upon future recruitment is at present unknown.
• 7. The population of river lampreys in the tidal Ouse is potentially threatened by an unregulated increase in fishing effort. Current legislation needs to be modified to allow effective fishery management.

Copyright © 2006 John Wiley & Sons, Ltd.     

Pathogenicity of H5N1 influenza A viruses isolated in Vietnam between late 2003 and 2005

Since late 2003, highly pathogenic H5N1 influenza A viruses have spread among poultry and wild aquatic birds in Asian countries. Transmission of these viruses to humans can be lethal. Most human cases of infection with H5N1 viruses have occurred in Vietnam. Therefore, to understand the pathogenicity in mammals of these H5N1 viruses, we took viruses isolated from poultry (5 strains) and humans (2 strains) in Vietnam and tested their virulence in mice. The results showed that the H5N1 viruses from humans were pathogenic in mice and that one avian isolate was also pathogenic. These findings suggested that the H5N1 viruses circulating in poultry adapted during replication in humans or that strains pathogenic in mice were transmitted directly to humans.     

Molecular characterization of the hemagglutinin and neuraminidase genes of H5N1 influenza A viruses isolated from poultry in Vietnam from 2004 to 2005

Highly pathogenic H5N1 avian influenza A viruses have been spreading among domestic poultry, wild aquatic birds, and humans in many Asian countries since 2003. The largest number of patients, to date, infected with the H5N1 viruses are in Vietnam, where these viruses continue to cause outbreaks in domestic poultry. Here, we molecularly characterized the hemagglutinin and neuraminidase genes of nine H5N1 viruses isolated between January 2004 and August 2005 from domestic poultry in Vietnam. We found that several groups of highly pathogenic H5N1 avian influenza viruses are circulating among these birds, which suggests that H5N1 viruses of different lineages have been introduced into Vietnam multiple times.     

基于对应分析的土壤盐渍化现状特征及其与光谱关系研究

土壤盐渍化是目前世界农业面临的主要环境问题之一。全球盐渍化土壤大约9.55×10~8hm~2,次生盐渍化土壤约0.77×10~8hm~2,而且还在不断增加。这就需要认真、及时地监测土壤盐渍化的现状及其变化趋势以阻止土壤次生盐渍化的不断发展,确保土地利用和管理的可持续发展。Metternicht     

Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization

The classical view of DNA posits that DNA must be stiff below the persistence length [<150 base pairs (bp)], but recent studies addressing this have yielded contradictory results. We developed a fluorescence-based, protein-free assay for studying the cyclization of single DNA molecules in real time. The assay samples the equilibrium population of a sharply bent, transient species that is entirely suppressed in single-molecule mechanical measurements and is biologically more relevant than the annealed species sampled in the traditional ligase-based assay. The looping rate has a weak length dependence between 67 and 106 bp that cannot be described by the worm-like chain model. Many biologically important protein-DNA interactions that involve looping and bending of DNA below 100 bp likely use this intrinsic bendability of DNA.