Comparison between 10,000-year old and contemporary spruce lignin

Wood from white spruce Picea glauca that had been preserved by rapid burial in lake sediments 10,000 years ago, was investigated and compared to a contemporary reference white spruce wood. The 10,000-year old sample appeared to have an intact primary cell wall and middle lamella, whereas the carbohydrate monomer distribution, and microscopic images showed that the secondary wall was at least partially removed, indicating that this structure had been selectively attacked by bacteria. The Klason lignin amount in the aged spruce was found to be 60%. The relative lignin monomer content in the aged spruce was 9% lower than that of the reference wood, showing that there were fewer β-O-4′ linkages in the aged sample. This finding was supported by SEC analysis of the thioacidolysed samples as a larger proportion of lignin oligomers were observed in the aged spruce than in the reference material. This indicates a somewhat greater number of condensed bonds in the aged spruce than in the reference spruce sample. Quantitative ¹³C NMR analysis and HSQC techniques applied on milled wood lignins (MWL) revealed no significant structural differences between the aged spruce and the reference.     

Cellulose content as a selection trait in breeding for kraft pulp yield in Eucalyptus urophylla

? The aim of this study was to investigate the effectiveness of using cellulose content, measured by the diglyme-HCl method, as a selection trait in breeding programs for kraft pulp yield in Eucalyptus urophylla.

? A total of 275 trees from sixty-two families were sampled from a thinned progeny trial of E. urophylla in northern Vietnam to evaluate cellulose content from breast-height increment cores. Among those, twenty unrelated trees were felled to evaluate cellulose content and pulp yield from breast-height disk samples.

? The regression of pulp yield of disk samples on cellulose content was strong either from disks (R ² = 0.83) or increment cores (R ² = 0.69). There was no significant difference in cellulose content between the provenances. The narrow-sense within-provenance heritability of cellulose content was 0.50 and the coefficient of additive genetic variation was 3.9%. Genetic correlations between cellulose content and growth (0.28–0.45) or wood basic density (?0.02) were not significantly different from zero.

? Breast-height increment core cellulose content measured by diglyme-HCl method is under strong genetic control and can be used to rank trees for pulp yield in E. urophylla plantations. Selection for increased cellulose content would have only minor effects on growth and wood basic density.

     

Relationship of wood composition to growth traits of selected open-pollinated families of <Emphasis Type="Italic">Eucalyptus urophylla</Emphasis> from a progeny trial in Vietnam

Lignin and cellulose contents and wood basic density were related to diameter at breast height (DBH) in six fast-growing and five slow-growing families from a combined progeny test and seedling seed orchard of Eucalyptus urophylla grown for 10 years in northern Vietnam. The mean cellulose content of the fast-growing families was significantly higher than that of the slow growing-families (40.0 and 37.1%, respectively), and for individual trees cellulose content was significantly correlated phenotypically with DBH. Wood basic density was significantly lower in the fast-growing group than in the slow-growing group (0.506 and 0.535 g cm⁻³, respectively), and was significantly negatively correlated phenotypically with DBH. The lignin contents were not significantly different between groups. Cellulose content and wood basic density were not correlated. The main conclusion is that there is no obstacle to combining high growth rate with high cellulose content, for plantation of forests intended mainly for pulpwood.     

Infection dynamics of Ascaridia galli in non-caged laying hens

The infection dynamics of Ascaridia galli in laying hens was investigated in six commercial non-caged flocks. Three flocks were managed in accordance with the regulations for organic production and had outdoor access, whereas three flocks were housed indoors in aviaries or traditional floor systems. Faecal egg counts and total worm burdens were determined at specified intervals during the first 50 weeks of the production period. In two conventional flocks the efficacy of flubendazole on lumenal stages was investigated. All flocks became infected following the arrival of the birds (post placement) with residual infective eggs derived from the previous flock. In four flocks (two organic and two conventional) parasite eggs were first detected in faeces 6-7 weeks post placement, whereas parasite eggs were not detected until after 17-18 weeks in two flocks. This delay was observed in two of three flocks that were housed in barns that had been thoroughly cleaned and disinfected by chlorocresol. In three flocks (two conventional and one organic) flubendazole was administered to the birds in the drinking water for approximately one week. Both conventional flocks were dewormed twice approximately 20 weeks apart, whereas the organic flock was dewormed only once about 40 weeks post placement. Parasite eggs reappeared after deworming in all flocks, often within 2-4 weeks, followed by a rapid increase in parasite egg expulsion. Our results suggested impairment of host immunity post treatment, as the egg counts exceeded pre-treatment levels after 7-8 weeks on both conventional farms. Accordingly, the way by which anthelmintics and/or disinfectants are used in non-caged chicken flocks must be refined.     

Typing of Brachyspira spp. from rodents, pigs and chickens on Swedish farms

Rhodococcus equi is a soil borne bacterium that causes severe morbidity and death in young foals. The economic costs of the disease include loss of life, treatment expenses, veterinary monitoring expenses and, perhaps most importantly, potential reduction in future athletic performance in horses that suffer severe lung abscessations caused by R. equi. Current standard of care for pneumonia caused by R. equi is treatment with a macrolide antimicrobial and rifampicin. However, the hallmark of pneumonia caused by R. equi is severe formation of pyogranulomas and a walling off effect that can prevent systemic antibiotics from reaching antimicrobial concentrations in lung tissues. It is hypothesized that streptolysin O (SLO) used as an adjunct therapy with antibiotics will reduce the duration and severity of disease caused by R. equi pneumonia compared to antibiotic therapy alone. Addition of SLO to the antibiotic enhanced clinical responses compared to the other groups, including the antibiotic alone group. Of particular significance were lower bacterial counts in the lungs and longer survival time in those foals treated with SLO and antibiotics.     

Modelling temperature,moisture and surface heat balance in bare soil under seasonal frost conditions in China

Soil heat and moisture processes are interconnected, especially during low temperatures. To examine the interaction between soil temperature and moisture under freeze‐thaw cycles, a physical process‐based model (CoupModel) coupled with uncertainty analysis was applied to 3‐year measurements under seasonal frost conditions from a site in the black soil belt of northeast China. The uncertainty in parameters and measurements was described by general likelihood uncertainty estimation (GLUE). To identify the degree of linkage between soil temperature and moisture, three criteria were applied to them separately or together. The most sensitive parameters among 26 site‐specific parameters were closely related to soil heat, soil evaporation and freeze‐thaw processes. Soil temperature was simulated with less uncertainty than soil moisture. Soil temperature measurements had the potential to improve model performance for soil water content, whereas soil moisture measurements demonstrated a trade‐off effect when finding a model with good performance for both temperature and moisture. During winter conditions the uncertainty ranges of soil temperature were most pronounced, probably because of the greater complexity of soil properties during the freeze‐thaw process and the uncertainty caused by snow properties. The largest uncertainty ranges of both soil water content and soil water storage were found mainly in the deep soil layers. The simulated surface heat fluxes are an important output of the model and it is of great value to compare them with the results from regional climate models and micrometeorological measurements.     

Mimotope of Leptospira from phage-displayed random peptide library is reactive with both monoclonal antibodies and patients' sera

The study aim was to use random heptapeptide library displayed by bacteriophage T7 for identifying mimotopes from 15 monoclonal antibodies (MAbs) specific to Leptospira spp., and from four leptospirosis patient sera, respectively. The bound phages, selected from fourth round of bio-panning with each antibody, were cloned by plaque isolation and the binding specificity of individual clones were confirmed by enzyme-linked immunosorbent assay, before being further amplified and checked for phage peptide sequence using PCR and DNA sequencing. All together 150 phages were selected, mimotope from 86 phages (56.6%) were found to match with protein sequences of Leptospira from GenBank database. The predominant mimotopes were mimotope with sequence LTPCD that found in 27.3%, followed by TPCSK (16%), KSKKSS (4%), KTKRXAS (4%), SSKSYR (3.3%), DPNXNSF (3.3%), KSGRC (2.6%), TLINIF (2%), TPCI (2%), 1.33% each with mimotopes PKKS, PCNTKXTA, and CTKKK, and one phage each (0.66%) with mimotopes PTFGS, TNSKRK, SKSSRC, RSKRIR, VTNNTP, and CSNXSKR. Interestingly, mimotopes LTPCD, TPCSK, and TPCI were found to react with both MAb and patient's sera. The matched proteins from GenBank namely, leptospiral putative outer membrane protein (matched with mimotope PTFGS), thermolysin precursor protein (matched with mimotope TPCIXXGSAS), and hypothetical protein LIC12228 (matched with mimotope CSNXSKR), were found to locate at outer membrane of Leptospira. These phage mimotopes and matched proteins may have potential for further use as diagnostic reagent and immunogen against leptospirosis in the future. The results demonstrate that phage display technique has potential for rapidly identifying phage mimotopes that interact with leptospiral MAbs and patient's sera.     

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

We report the draft genome of the black cottonwood tree, Populus trichocarpa. Integration of shotgun sequence assembly with genetic mapping enabled chromosome-scale reconstruction of the genome. More than 45,000 putative protein-coding genes were identified. Analysis of the assembled genome revealed a whole-genome duplication event; about 8000 pairs of duplicated genes from that event survived in the Populus genome. A second, older duplication event is indistinguishably coincident with the divergence of the Populus and Arabidopsis lineages. Nucleotide substitution, tandem gene duplication, and gross chromosomal rearrangement appear to proceed substantially more slowly in Populus than in Arabidopsis. Populus has more protein-coding genes than Arabidopsis, ranging on average from 1.4 to 1.6 putative Populus homologs for each Arabidopsis gene. However, the relative frequency of protein domains in the two genomes is similar. Overrepresented exceptions in Populus include genes associated with lignocellulosic wall biosynthesis, meristem development, disease resistance, and metabolite transport.     

Mast cells can enhance resistance to snake and honeybee venoms

Snake or honeybee envenomation can cause substantial morbidity and mortality, and it has been proposed that the activation of mast cells by snake or insect venoms can contribute to these effects. We show, in contrast, that mast cells can significantly reduce snake-venom-induced pathology in mice, at least in part by releasing carboxypeptidase A and possibly other proteases, which can degrade venom components. Mast cells also significantly reduced the morbidity and mortality induced by honeybee venom. These findings identify a new biological function for mast cells in enhancing resistance to the morbidity and mortality induced by animal venoms.     

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom

Phytoplankton blooms characterize temperate ocean margin zones in spring. We investigated the bacterioplankton response to a diatom bloom in the North Sea and observed a dynamic succession of populations at genus-level resolution. Taxonomically distinct expressions of carbohydrate-active enzymes (transporters; in particular, TonB-dependent transporters) and phosphate acquisition strategies were found, indicating that distinct populations of Bacteroidetes, Gammaproteobacteria, and Alphaproteobacteria are specialized for successive decomposition of algal-derived organic matter. Our results suggest that algal substrate availability provided a series of ecological niches in which specialized populations could bloom. This reveals how planktonic species, despite their seemingly homogeneous habitat, can evade extinction by direct competition.