Excitation Gap in the Normal State of Underdoped Bi2Sr2CaCu2O8+delta

Angle-resolved photoemission experiments reveal evidence of an energy gap in the normal state excitation spectrum of the cuprate superconductor Bi2Sr2CaCu2O8+delta. This gap exists only in underdoped samples and closes around the doping level at which the superconducting transition temperature Tc is a maximum. The momentum dependence and magnitude of the gap closely resemble those of the dx2-y2 gap observed in the superconducting state. This observation is consistent with results from several other experimental techniques, which also indicate the presence of a gap in the normal state. Some possible theoretical explanations for this effect are reviewed.     

Impact of the national full herd depopulation policy on the recurrence of bovine tuberculosis in Irish herds, 2003 to 2005

This study evaluated the impact of the Irish herd bovine tuberculosis (bTB) depopulation policy (depopulation, disinfection, contiguous testing and local badger removal where implicated) on the recurrence of bTB infection, by comparing the future risk in restocked herds following depopulation for either bTB or bovine spongiform encephalopathy (BSE) during 2003 to 2005. Each herd was assigned a 'previous bTB risk', based on bTB history during the five years before depopulation. Future bTB risk was estimated, using a multivariable Cox proportional hazard model for time-to-breakdown for each study herd, to identify risk factors associated with bTB. Future bTB risk varied significantly by reason for depopulation and previous bTB risk. Herds depopulated for bTB (by definition, at high bTB risk) were not significantly different from BSE herds with no or a low previous bTB risk. BSE herds with a high previous bTB risk were found to be at significantly greater future bTB risk. Herd bTB depopulation measures, as currently applied in Ireland, are shown to be effective in enabling herds to attain and retain bTB freedom following restocking. Based on the data presented, and consistent with current knowledge of the bTB epidemiology, local badger removal contributes to efforts to limit recurrence of bTB in Ireland.     

Sperm Chromatin Stability During In Vitro Manipulation of Beef Bull Semen

Seven experiments were conducted to study the effect of freezing extenders, antioxidants, motility stimulants, thawing temperature, incubation temperature and time, centrifugation and capacitation on sperm chromatin instability (CI) as well as the influence of sperm CI on pregnancy rates of heifers (n = 360) after AI with frozen semen. Semen was collected once a week from Blonde d’Aquitaine and Limousine bulls (n = 3/breed) via an artificial vagina and only individual ejaculates (n = 300) of >0.3 × 10⁹ sperm/ml and ≥ 70% progressive motility were used. Sperm CI was evaluated by nuclear DNA susceptibility to acid‐induced denaturation using acridine orange fluorescence and by chromatin susceptibility to decondensation using quantitative transmission electron microscopy. Bioxcell extender was better than AndroMed and egg yolk extenders in terms of low incidence of sperm CI in one bull (p < 0.05). Neither antioxidants (EDTA–2Na, Na‐pyruvate and albumin) nor motility stimulants (caffeine and blood serum) had any significant effect on sperm CI. Thawing of frozen semen at 45°C for 30 s decreased (p < 0.025) CI in one bull. Incubation of frozen sperm at 25 and 39°C for 240 min increased sperm CI percentages from 3.47 ± 0.48 and 4.50 ± 0.41% to 6.70 ± 0.36 and 9.71 ± 0.53%, respectively (p < 0.001). Although centrifugation and removal of extracellular milieu increased CI of cooled sperm, it decreased CI of frozen–thawed sperm (p < 0.025). Follicular fluid as a capacitating agent destabilized chromatin structure (p < 0.001). Sperm vulnerability to CI had a negative impact (r² = 0.37–0.77, p < 0.001) on fertility of frozen ejaculates. In conclusion, in vitro manipulation of bovine semen can influence incidence of sperm CI, whereas integrity of sperm chromatin contributes significantly to heifers’ fertility. We would recommend selection of the appropriate extender and thawing temperature for each bull together with careful manipulation of frozen semen to minimize damage of sperm chromatin.     

Aligning conservation priorities across taxa in Madagascar with high-resolution planning tools

Globally, priority areas for biodiversity are relatively well known, yet few detailed plans exist to direct conservation action within them, despite urgent need. Madagascar, like other globally recognized biodiversity hot spots, has complex spatial patterns of endemism that differ among taxonomic groups, creating challenges for the selection of within-country priorities. We show, in an analysis of wide taxonomic and geographic breadth and high spatial resolution, that multitaxonomic rather than single-taxon approaches are critical for identifying areas likely to promote the persistence of most species. Our conservation prioritization, facilitated by newly available techniques, identifies optimal expansion sites for the Madagascar government's current goal of tripling the land area under protection. Our findings further suggest that high-resolution multitaxonomic approaches to prioritization may be necessary to ensure protection for biodiversity in other global hot spots.     

Growth and fillet quality attributes of five genetic strains of rainbow trout (Oncorhynchus mykiss) reared in a partial water reuse system and harvested at different sizes

Genetics and harvest size influence fish growth performance and product quality attributes, making selection of fish strain and harvest size critical for optimizing quality. Definition of performance and quality outcomes in a recirculating aquaculture system (RAS) environment may guide selection of fish stocks best suited for RAS farmers to meet production and product quality goals. Accordingly, five genetic lines of rainbow trout, Oncorhynchus mykiss were reared to 3 kg in a partial water reuse system and sampled at common harvest sizes (0.5, 1, 2 and 3 kg) to compare growth performance and product quality attributes. Fish weight affected fish processing yields and cook yields. Genetic line affected fish weight. When correcting for fish size, differences in fillet yields due to genetic line were present. Both fish weight and genetic line affected different organ indices, fillet colour scores and mortality. Muscle composition and texture were similar at each harvest, but changed with increasing fish size over time. Differences in growth performance and product quality traits due to genetic line identify variation in available fish stocks, and balancing change to these traits due to fish size can guide producer selection of fish stocks and optimal harvest size to meet individual production goals.     

Berry distributions on coffee trees cultivated under high densities modulate the chemical composition of respective coffee beans during one biannual cycle

ABSTRACT

Coffee trees show the fluctuation in production related to biannual phenological development. We aimed to quantify the berry distribution over the vertical profile and relate the chemical composition of coffee beans during few subsequent harvests in each of two production years (PY). The analyzed coffee productions followed severe pruning of plants grown in different planting designs. In the second PY, coffee plants loaded roughly fourfold more berries than the first PY. In the first PY, berry distribution in zones of plagiotropic axes that passed all physiological phases was characterized by random maturation over three harvests, while in the second PY, berry maturation over the orthotropic and plagiotropic axes differed between two harvests, suggesting higher impact of local light microclimate and, consequently, local source–sink relations. Proteins, sucrose, and lipids were the most sensitive studied chemical components when modifications in coffee beans composition were analyzed, considering the impacts of PY, harvest time, planting design, and berry position. Sucrose content increased in latter harvests, indicating better berry maturation compared to the first harvest in both PY. Protein and caffeine contents increased and lipids decreased in higher density and low plant layer during the second PY, suggesting that deposition of those components was modified by self-shading and maturation time related to the berry position over the plant profile.