Genetic diversity within Australian wheat breeding programs based on molecular and pedigree data

124 wheat cultivars and breeding lines were screened with 19 microsatellite (SSR) loci generating 160 scorable bands which were used to construct a genetic distance (GD) matrix. A distance matrix based on coefficient of parentage (COP) scores was also generated for the cultivars for which good pedigree records were available. The SSR and COP data for 101 of the wheat cultivars were compared with genetic distance scores obtained using1898 scorable restriction fragment length polymorphism (RFLP) bands previously generated. Phylograms were generated based on the SSR, RFLP,combined SSR and RFLP and COP data. The standardised Mantel's Z test showed that the distance matrices generated from all of the data sets were significantly correlated. Bootstrap analysis showed that, although the SSR and RFLP data were correlated, a large number of SSR loci are required for determining robust genetic relationships between large numbers of cultivars. In addition, accurate pedigree records are needed to determine genetic relatedness using COP. The molecular data were also used to determine the level of genetic variability within breeding programs and to assess the impact of the introduction of semidwarf and other germplasm. The results showed that the level of genetic diversity in Australian wheat cultivars has increased over time and that in particular, the introduction of semidwarf germplasm resulted in an increase in the overall diversity. This revised version was published online in August 2006 with corrections to the Cover Date.     

Yield and adaptation of hexaploid spring triticale

Summary Gains in yield and stability were analysed using grain yield data from the 8th to the 14th International Triticale Yield Nursery (ITYN) and differences in adaptation between complete and substituted triticales (X Triticosecale Wittmack) were examined. A trend of improving yield and adaptation was observed. As highly significant genotype × site interaction each year was not adequately described using regression analysis, yield stability was examined by ranking genotypes within sites and summarizing scores for individual genotypes across sites. Cluster analysis was used to study the relationships among sites and among genotypes. There was little evidence of sites grouping on a geographical basis. Grouping of genotypes showed a tendency for complete and substituted triticales to perform differently, suggesting that diversity for adaptation is maximized by utilizing both types in breeding.Progress for grain yield is compared with more spectacular gains in test weight and reasons for the different rates of improvement are postulated.Abbreviations CIMMYT International Maize & Wheat Improvement Centre - ITYN International Triticale Yield Nursery contribution from CIMMYT/Agriculture Canada (No. R-002)     

Local population structure of a naturally occurring metapopulation of the quokka (Setonix brachyurus Macropodidae: Marsupialia)

We investigated the population structure of the quokka (Setonix brachyurus) on the mainland of Western Australia using mark–recapture techniques. Seven previously known local populations and one unconfirmed site supporting the preferred, patchy and discrete, swampy habitat of the quokka were trapped. The quokka is now considered as locally extinct at three sites. The five remaining sites had extremely low numbers, ranging from 1 to 36 individuals. Population density at these sites ranged from 0.07 to 4.3 individuals per hectare. There has been no response to the on-going, 6 year fox control programme occurring in the region despite the quokkas’ high fecundity and this is due to low recruitment levels. The remaining quokka populations in the northern jarrah forest appear to be the terminal remnants of a collapsing metapopulation.     

Application of a simulation model for assessing integration of smallholder shifting cultivation and sheep production in Yucatán, Mexico

Simulation models are effective tools to examine interactions between livestock, cropping systems, households, and natural resources. Our study objective was to use an integrated livestock and crop model to assess the outcomes from selected suites of management decisions observed in smallholder sheep-cropping systems of Yucatán, Mexico. The scenarios contrasted specialized systems versus mixed farming, and evaluated the outcomes of increased crop-livestock integration. Mixed enterprise scenarios involving sheep provided more income than specialized enterprises, and capitalized on a lower price of on-farm maize grain, efficient utilization of surplus labor, and availability of common land. Labor and management income was greatest for the unintegrated and partially integrated crop and livestock scenarios. It was more profitable for producers to sell excess grain and maize stover, and use common land to feed the livestock, suggesting that increased integration does not always result in improved outcomes. The results are consistent with a system not yet pushed to the point where integration is inevitable. For all sets of scenarios, the model structure was able to accommodate subtle management differences to produce appropriate biophysical, labor, and economic outcomes. We conclude there is potential to use similar model development methods to describe other crop-livestock systems, thus providing tools for learning, scenario analysis, and impact assessment.     

CX3CR1-mediated dendritic cell access to the intestinal lumen and bacterial clearance

Dendritic cells (DCs) and macrophages are critical to innate and adaptive immunity to the intestinal bacterial microbiota. Here, we identify a myeloid-derived mucosal DC in mice, which populates the entire lamina propria of the small intestine. Lamina propria DCs were found to depend on the chemokine receptor CX3CR1 to form transepithelial dendrites, which enable the cells to directly sample luminal antigens. CX3CR1 was also found to control the clearance of entero-invasive pathogens by DCs. Thus, CX3CR1-dependent processes, which control host interactions of specialized DCs with commensal and pathogenic bacteria, may regulate immunological tolerance and inflammation.