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991.
Genetic diversity of seven Rhus L. species was assessed using random amplified polymorphic DNA (RAPDs) markers. Initially, 90 primers were screened, of which 25 produced reproducible amplification products. These primers generated a total of 296 bands, with an average of 11.8 bands per primer. Out of 296 bands scored, 236 (80%) were polymorphic and 62 (20%) were monomorphic. Primers OPC-05 and OPD-05 generated 100% polymorphic bands. The resolving power of primers ranged from 9.4 to 26.8. Similarity matrix values ranged from 0.45 to 0.63. The dendrogram generated using Unweighted Pair Group Method using Arithmetic Averages (UPGMA) grouped all the species of Rhus in one major group with two sister groups, whilst R. pyroides Burch. and R. dentata Thunb. were outliers. R. gerrardii (Harv. ex Engl.) Diels, R. glauca Thunb. and R. pentheri Zahlbr. constituted one sister group, while R. natalensis Bernh. ex C. Krauss and R. gueinzii Sond. were included in the other. The degree of genetic diversity observed between seven species of Rhus with RAPD markers suggest that this approach could be used for studying the phylogeny of the genus. 相似文献
992.
Niel Hens Christel Faes Marc Aerts Ziv Shkedy Koen Mintiens Hans Laevens Frank Boelaert 《Journal of Agricultural, Biological & Environmental Statistics》2007,12(4):498-513
Modeling infectious diseases data is a relatively young research area in which clustering and stratification are key features.
It is not unlikely for these data to have missing values. If values are missing completely at random, the analysis on the
complete cases is valid. However, in practice this assumption is usually not fulfilled. This article shows the effect of ignoring
missing data in modeling the force of infection of the bovine herpesvirus-1 in Belgian cattle and proposes the use of weighted
generalized estimating equations with constrained fractional polynomials as a flexible modeling tool. 相似文献
993.
Fujun Wang Melanie M. Wall 《Journal of Agricultural, Biological & Environmental Statistics》2003,8(3):296-309
In spatial predictions, researchers usually treat the estimated theoretical variogram parameters as known without error and ignore the variability of the parameter estimators. Although the prediction is still unbiased, the prediction error is usually underestimated. Therefore, the coverage probability of the prediction interval usually is lower than the nominal probability. A simulation study is performed to show how the coverage probability for prediction relates to the true range and sill of an exponential variogram. This article proposes two parametric bootstrap methods to incorporate the variability of the corresponding parameter estimators. A simulation study is performed to evaluate the coverage probability of these proposed methods. Finally, we apply the parametric bootstrap methods to a real dataset and compare the results with those from naive (i.e., treating estimated parameters as known) and Bayesian methods. 相似文献
994.
Dong Fu Liang Chen Guohui Yu Yi Liu Qiaojun Lou Hanwei Mei Liang Xiong Mingshou Li Xiaoyan Xu Lijun Luo 《Euphytica》2011,180(2):209-218
Sheath blight, caused by the pathogen Rhizoctonia solani Kühn, is one of the most serious diseases of rice and leads to severe yield loss worldwide. A recombinant inbred line (RIL)
population consisting of 121 lines was constructed from a cross between HH1B and RSB03, the latter of which is a deep-water
rice variety. Five traits were used to evaluate sheath blight resistance, namely disease rating (DR), lesion length (LL),
lesion height (LH), relative lesion length [RLL, the ratio of LL to plant height (PH)], and relative LH (RLH, the ratio of
LH to PH). Using the RIL population and 123 molecular markers, we identified 28 quantitative trait loci (QTLs) for the five
traits in two environments. These QTLs are located on nine chromosomes and most of them are environment specific. A major
QTL for DR (qSBR1) on chromosome 1 was identified with contributions of 12.7% at Shanghai and 42.6% at Hainan, and it collocated with a QTL
for PH. The allele at this locus from RSB03 enhances sheath blight resistance and increases PH. Another QTL for DR on chromosome 7
was adjacent to QTLs for heading date (HD) and four other disease traits. RSB03 also carries the resistant allele at this
locus and shortens HD. The susceptible parent, HH1B, provides the resistance allele at the locus qSBR8, where QTLs for four other disease traits were identified. QTL mapping results showed that most QTLs for LL, LH, RLL, and
RLH are collocated with QTLs for DR. Three QTLs for DR are independent from HD, PH, and four other disease traits, while four
QTLs are closely related to HD and PH. Four QTLs for LL, LH, RLL, and RLH are independent from DR, HD, and PH, while there
is only one region harboring QTLs for these four traits and HD. Correlation analysis and QTL mapping results indicated that
LL, LH, RLL, and RLH might be important indices, like DR, for evaluating the level of resistance to rice sheath blight. 相似文献
995.
András Cseri Mátyás Cserháti Maria von Korff Bettina Nagy Gábor V. Horváth András Palágyi János Pauk Dénes Dudits Ottó Törjék 《Euphytica》2011,181(3):341-356
In the present study, allele mining was conducted on a panel of drought related candidate genes in a set of 96 barley genotypes
using EcoTILLING, which is a variant of the targeting induced local lesions in genomes (TILLING) technology. Analyzing approximately
1.5 million basepairs in barley a total number of 94 verified unique haplotypes were identified in 18 amplicons designed for
9 genes. Overall, 185 single nucleotide polymorphisms (SNPs) and 46 insertions/deletions (INDELs) were detected with a mean
of 1SNP/92 bp and 1INDEL/372 bp genomic sequence. Based on overlapping haplotype sequences, markers were developed for four
candidate genes (HvARH1, HvSRG6, HvDRF1, HVA1), which allows distinguishing between the main haplotypes showing either differences in amino acid sequence or which have
larger INDELs in the promoter region. As “proof of concept”, the HvARH1 and HvSRG6 haplotypes were tested for the level of abscisic acid-induced gene expression in subsets of genotypes belonging to different
haplotype categories. An integrated database was developed to contain information about the genes, genotypes, and haplotypes
analyzed in this study. The database supplies profound information about the natural variation in the tested drought related
candidate genes providing a significant asset for further mapping studies dealing with this highly polygenic trait. 相似文献
996.
Haejeen Bang Dong Youn Cho Kil-Sun Yoo Moo-Kyoung Yoon Bhimanagouda S. Patil Sunggil Kim 《Euphytica》2011,179(3):439-449
In order to implement reliable marker-assisted selection systems for the restorer-of-fertility locus (Ms) in onions (Allium cepa L.), simple PCR-based codominant markers linked to the Ms locus were developed. Based on the EST probe sequences of previously reported RFLP markers, full-length genomic sequences
of the gene encoding putative oligopeptide transporter (OPT) was obtained by RACE. The first intron contained two 108 and
439-bp indel polymorphisms between the two Ms allele-linked OPT alleles. A simple PCR marker for OPT was developed by designing a primer pair on the flanking regions of
the 108-bp indel which is created by two tandem repeats. The second simple PCR marker was developed from the EST probe encoding
photosystem I subunit O (PsaO). Two 14 and 39-bp tandem repeats were identified from the 5′ upstream sequences of the PsaO-coding
gene, which were isolated by genome walking. Three different compositions of these tandem repeats were identified from diverse
onion germplasm. A primer set binding to the flanking sequence of these polymorphic repeats was used to amplify three different
marker haplotypes. The OPT marker was tightly linked to the Ms locus at a distance of 1.5 cM, but the analysis of the linkage relationship showed little linkage disequilibrium between
the marker and the Ms locus. Even so, these simple PCR markers are valuable tools for the marker-assisted selection of segregating individuals
in onion F1 hybrid breeding programs. 相似文献
997.
This paper offers projections of potential effects of climate change on rusts of wheat and how we should factor in a changing
climate when planning for the future management of these diseases. Even though the rusts of wheat have been extensively studied
internationally, there is a paucity of information on the likely effects of a changing climate on the rusts and their influence
on wheat production. Due to the lack of published empirical research we relied on the few published studies of other plant
diseases, our own unpublished work and relevant information from the vast literature on rusts of wheat to prepare this overview.
Three broad areas of potential risks from a changing climate were described: increased loss from wheat rusts, new rust pathotypes
evolving faster and the reduced effectiveness of rust resistances. Increased biomass of wheat crops grown in the presence
of elevated CO2 concentrations and higher temperatures will increase the leaf area available for attack by the pathogen leading to increased
inoculum production. If changed weather conditions were to accelerate the life cycle of a pathogen, the increased inoculum
can lead to severe rust epidemics in many environments. Likewise should the effects of climate change result in more conducive
conditions for rust development there will also be a corresponding increase in the rate of evolution of new pathotypes which
could increase the rate of appearance of new virulences. The effectiveness of some rust resistance genes is influenced by
temperature and crop development stage. Climate change may directly or indirectly influence the effectiveness of some resistance
genes but this can not be ascertained due to a complete lack of knowledge. Since disease resistance breeding is a long term
strategy it is important to determine if any of the important genes may become less effective due to climate change. Studies
must be made to acquire new information on the rust disease triangle to increase the adaptive capacity of wheat under climate
change. Leadership within the Borlaug Global Rust Initiative (BGRI) is needed to broker research on rust evolution and the
durability of resistance under climate change. 相似文献
998.
Tusar K. Behera Jack E. Staub Snigdha Behera Isabelle Y. Delannay Jin Feng Chen 《Euphytica》2011,178(2):261-272
Cucumber (Cucumis sativus L.) is a major cucurbit vegetable species whose genetic base has been drastically reduced during its domestication. The crop’s
narrow genetic base (3–12% DNA polymorphism) has resulted from the use of limited genetic material and intense selection during
plant improvement. Recently, however, interspecific hybridization has been successful in Cucumis via mating of C. hystrix Chakr. and C. sativus, which resulted in the amphidiploid C. hytivus. We report herein a marker-assisted strategy for increasing genetic diversity in cucumber through introgression backcrossing
employing C. hytivus. The comparatively late-flowering but high-yielding, indeterminate, monoecious line WI 7012A (P1; donor parent) derived from a C. hytivus × C. sativus-derived line (long-fruited Chinese C. sativus cv. Beijingjietou) was initially crossed to the determinate, gynoecious C. sativus line WI 7023A (P2; recurrent parent 1), and then advanced backcross generation progeny (BC2) were crossed with the gynoecious indeterminate line WI 9-6A (P3; recurrent parent 2). More specifically, a single F1 individual (P1 × P2) was backcrossed to P2, and then BC progeny were crossed to P2 and P3, where marker-assisted selection (MAS) for genetic diversity (8 mapped and 16 unmapped markers; designated Sel) or no selection
(designated NSel) was applied to produce BC3P2 (Sel) and BC3P3 (Sel), and BC2P2 (NSel) and BC2P2S1 (NSel) progeny. Relative vegetative growth, number of lateral branches (LB), days to flowering (DF), yield (fruit number),
and fruit quality [as measured by length:diameter (L:D) and endocarp:total diameter (E:T) ratios] were assessed in parents
and cross-progeny. DF varied from ~20 (BC3P2Sel) to ~25 days (BC2P3Sel) among the populations examined, where progeny derived from P2 possessed the shortest DF. Differences in cumulative yield among the populations over six harvests were detected, varying
from ~8 fruits per plant in BC3P2 (Sel) to ~39 fruits per plant in BC2P3 (Sel). Although the vigorous vegetative growth of line P1 was observed in its backcross progeny, highly heterozygous and polymorphic backcross progeny derived from P3 were comparatively more vigorous and bore many high-quality fruit. Response to selection was detected for LB, DF, L:D, and
E:T, but the effectiveness of MAS depended upon the parental lines used. Data indicate that the genetic diversity of commercial
cucumber can be increased by introgression of the C. hystrix genome through backcrossing. 相似文献
999.
Self-incompatibility (SI) is a widespread mechanism in flowering plants that promotes outbreeding and thereby increases genetic
diversity. Recognition specificity in Brassica is achieved by the interaction of the female determinant S-receptor kinase (SRK) and its ligand, the male determinant S-locus protein 11 (SP11). The interaction between SP11 and SRK triggers the signaling cascade in an S-haplotype-specific manner and results in the rejection of self-pollen, but the signal components involved are still not well
characterized. S haplotypes are widespread in self-compatible amphidiploid B. napus, and the interaction of heterozygous S haplotypes causes the loss of SI. This review highlights the recent advances made towards understanding the genetic analysis,
distribution, and evolution of S haplotypes, the signal factors, and the potential of SI in B. napus hybrid breeding program. 相似文献
1000.
A. M. Anithakumari Oene Dolstra Ben Vosman Richard G. F. Visser C. Gerard van der Linden 《Euphytica》2011,181(3):357-369
Drought stress is a major abiotic constraint limiting crop production worldwide. Screening for drought tolerance and the traits
that enhance drought tolerance is not straightforward in large mapping populations. In this study, we investigated the possibility
of screening a mapping population in vitro for PEG-induced water deficit stress and recovery potential. We have measured several
shoot and root growth parameters or traits in the C × E diploid potato mapping population. Significant variation was observed
for genotype-specific responses to water deficit and recovery potential. Genetic variation and heritability estimates were
high to very high for the measured traits depending on growth conditions. In order to identify potato QTLs for drought tolerance
and recovery potential an SNP marker-rich integrated linkage map was used. A total of 23 QTLs were detected under control,
stress and recovery treatments explaining 10.3–22.4% of the variance for each phenotypic trait. Among these, 10 QTLs were
located on chromosome 2. Three QTLs involved in the important trait root to shoot ratio were identified on linkage groups
2, 3 and 8. These loci explained together 41.1% of the variance for this trait, and may be breeding targets for stress tolerance
and yield in the field as well. The SNP markers derived from EST sequences underlying these QTLs led to the identification
of putative candidate genes for further study in potato. This study constitutes the first knowledge of in vitro screening
of a mapping population for drought tolerance in potato. 相似文献