Threadfin Shad Dorosoma petenense Effects on Water Quality, Phytoplankton, and Channel Catfish Production in Ponds

Threadfin shad Dorosoma petenense are often stocked into commercial catfish ponds for biological control of algae. It is thought that the fish will alter the phytoplankton community, improve water quality, and enhance channel catfish production. Co-stocking of shad and catfish is a common practice, although there is limited information regarding the effects of threadfin shad on pond dynamics and catfish production. To evaluate the influence of shad in catfish ponds, this study was conducted in ten 0.04-ha experimental earthen ponds near Auburn, Alabama. All ponds were stocked in April with 600 fingerling channel catfish Ictal-urus punctatus (13,200/ha) with a mean length of 10.4 cm (4.1 in). Additionally, five of these ponds were randomly chosen and stocked with 70 adult threadfin shad (1,750/ha) weighing a total of 3.3 kg (16.5 kg/ha). At harvest in November, an average of 1,284 threadfin shad (32,100/ha), weighing a total of 55 kg (1,375 kg/ha) were collected from each shad pond. Water quality was improved with the addition of threadfin shad to channel catfish ponds. Mean total ammonia-nitrogen was significantly lower and less variable in the shad treatment. Observed mean nitrite concentrations, though not significant, were lower in the shad treatment. The phytoplankton community of the shad treatment had significantly higher density, more taxa, and smaller organisms. Pond water in the shad treatment had higher projected early morning dissolved oxygen levels requiring less aeration. Channel catfish had significantly higher survival in the shad treatment, furthermore, though not statistically significant, observed mean fish production was higher and feed conversion ratio was lower than in the no-shad treatment.     

Comparison of two DNA extractions and nested PCR, real-time PCR, a new commercial PCR assay, and bacterial culture for detection of Mycobacterium avium subsp. paratuberculosis in bovine feces.

In this study, 5 combinations of 2 DNA extractions and 3 polymerase chain reaction (PCR) techniques were compared with culture for the detection of Mycobacterium paratuberculosis directly from bovine feces. These combinations included a new commercial extraction technique combined with a commercial PCR/Southern blot technique, nested PCR (nPCR), or real-time PCR, and a university-developed extraction combined with nPCR or real-time PCR. Four of the 5 combinations had statistically similar sensitivities between 93% and 100% and specificity between 95% and 100%, when compared with culture results from 63 bovine fecal samples. These results indicated that using a commercial extraction with a commercial PCR/Southern blot, nPCR, or real-time PCR, or a university-developed extraction with real-time PCR would result in similar sensitivities to culture for the identification of M. paratuberculosis from bovine feces and are valid alternatives to culture.     

The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview

Mangrove communities are recognized as highly productive ecosystems that provide large quantities of organic matter to adjacent coastal waters in the form of detritus and live animals (fish, shellfish). The detritus serves as a nutrient source and is the base of an extensive food web in which organisms of commercial importance take part. In addition, mangrove ecosystems serve as shelter, feeding, and breeding zones for crustaceans, mollusks, fish of commercial importance, and resident and migratory birds. Although mangroves in the United States are protected, the systematic destruction of these ecosystems elsewhere is increasing. Deforestation of mangrove communities is thought to be one of the major reasons for the decrease in the coastal fisheries of many tropical and subtropical countries. There is evidence to propose a close microbe-nutrient-plant relationship that functions as a mechanism to recycle and conserve nutrients in the mangrove ecosystem. The highly productive and diverse microbial community living in tropical and subtropical mangrove ecosystems continuously transforms nutrients from dead mangrove vegetation into sources of nitrogen, phosphorus, and other nutrients that can be used by the plants. In turn, plant-root exudates serve as a food source for the microorganisms living in the ecosystem with other plant material serving similarly for larger organisms like crabs. This overview summarizes the current state of knowledge of microbial transformations of nutrients in mangrove ecosystems and illustrates the important contributions these microorganisms make to the productivity of the ecosystems. To conserve the mangrove ecosystems, which are essential for the sustainable maintenance of coastal fisheries, maintenance and restoration of the microbial communities should be undertaken. Inoculation of mangrove seedlings with plant-growth-promoting bacteria may help revegetate degraded areas and create reconstructed mangrove ecosystems.     

Habitat edges alter arthropod community composition

Landscape Ecology - Historically, habitat edges were thought to increase diversity by combining communities from two habitats, but empirical results are mixed. Variation in edge responses may be...     

A satellite image-based analysis of factors contributing to the green-space cool island intensity on a city scale

Urban green spaces provide cooler microclimates and create localized urban cool islands and, as part of an adaptation strategy to cope with future urban climate change, have been proposed as a means to mitigate the urban heat island effect. Numerous previous research papers have discussed green-space size, type, and vegetation density, as well as many other factors that might influence green-space cooling effects. However, little has been done with regard to exploring and quantifying the characteristics of the green-space cool island (UCI). It is also largely unknown whether or how the patterns of green space and land use, as well as the adjacent urban thermal environment, affect UCIs. In this paper, the land surface temperature (LST) was retrieved from satellite imagery. The UCI was identified, and one of the UCI characteristics, the UCI intensity, was defined. Multiple linear regression models were then used to explore and quantify the combined effects of factors related to the UCI intensity. The results show that the intensity differed between UCIs, and correlated significantly with the extent of and mean temperature reduction associated with an UCI. Multiple linear regression analysis found that UCI intensity was affected by areas of forest vegetation and its spatial arrangements, as well as by the composition of the cool island and its neighboring thermal environment. The study validated the suitability of using intensity as an indicator of the UCI. Identifying the UCI as a result of the green-space cooling effect, will help in the management and planning of the spatial arrangement of green spaces in cities to reduce the effects of the urban thermal environment and help cities adapt to climate change.     

A case-control study of pathogen and lifestyle risk factors for diarrhoea in dogs

Diarrhoea is a common and multi-factorial condition in dogs, the aetiology of which is often incompletely understood. A case-control study was carried out to compare the carriage of some common canine enteric pathogens (enteric coronavirus, parvovirus, distemper, endoparasites, Campylobacter and Salmonella spp.), as well as lifestyle factors such as vaccination history, diet and contact with other species, in dogs presenting at first opinion veterinary practices with and without diarrhoea. Multivariable conditional logistic regression showed that dogs in the study which scavenged or had had a recent change of diet (OR 3.5, p=0.002), had recently stayed in kennels (OR 9.5, p=0.01), or were fed a home-cooked diet (OR 4, p=0.002) were at a significantly greater risk of diarrhoea, whilst being female (OR 0.4, p=0.01), currently up to date with routine vaccinations (OR 0.4, p=0.05) and having contact with horse faeces (OR 0.4, p=0.06) were associated with a reduced risk. None of the pathogens tested for was a significant factor in the final multivariable model suggesting that in this predominantly vaccinated population, diarrhoea may be more associated with lifestyle risk factors than specific pathogens.     

National soil data in EU countries,where do we stand?

At the European scale, soil characteristics are needed to evaluate soil quality, soil health and soil-based ecosystem services in the context of the European Green Deal. While some soil databases exist at the European scale, a much larger wealth of data is present in individual European countries, allowing a more detailed soil assessment. There is thus an urgent and crucial need to combine these data at the European scale. In the frame of a large European Joint Programme on agricultural soils launched by the European Commission, a survey was conducted in the spring of 2020, in the 24 European participating countries to assess the existing soil data sources, focusing on agricultural soils. The survey will become a contribution to the European Soil Observatory, launched in December 2020, which aims to collect metadata of soil databases related to all kind of land uses, including forest and urban soils. Based upon a comprehensive questionnaire, 170 soil databases were identified at local, regional and national scales. Soil parameters were divided into five groups: (1) main soil parameters according to the Global Soil Map specifications; (2) other soil chemical parameters; (3) other physical parameters; (4) other pedological parameters; and (5) soil biological features. A classification based on the environmental zones of Europe was used to distinguish the climatic zones. This survey shows that while most of the main pedological and chemical parameters are included in more than 70% of the country soil databases, water content, contamination with organic pollutants, and biological parameters are the least frequently reported parameters. Such differences will have consequences when developing an EU policy on soil health as proposed under the EU soil strategy for 2023 and using the data to derive soil health indicators. Many differences in the methods used in collecting, preparing, and analysing the soils were found, thus requiring harmonization procedures and more cooperation among countries and with the EU to use the data at the European scale. In addition, choosing harmonized and useful interpretation and threshold values for EU soil indicators may be challenging due to the different methods used and the wide variety of soil land-use and climate combinations influencing possible thresholds. The temporal scale of the soil databases reported is also extremely wide, starting from the '20s of the 20th century.     

Identification of a host 14-3-3 Protein that Interacts with Xanthomonas effector AvrRxv

AvrRxv is a member of a family of pathogen effectors present in pathogens of both plant and mammalian species. Xanthomonas campestris pv. vesicatoria strains carrying AvrRxv induce a hypersensitive response (HR) in the tomato cultivar Hawaii 7998. Using a yeast two-hybrid screen, we identified a 14-3-3 protein from tomato that interacts with AvrRxv called AvrRxv Interactor 1 (ARI1). The interaction was confirmed in vitro with affinity chromatography. Using mutagenesis, we identified a 14-3-3-binding domain in AvrRxv and demonstrated that a mutant in that domain showed concomitant loss of interaction with ARI1 and HR-inducing activity in tomato. These results demonstrate that the AvrRxv bacterial effector recruits 14-3-3 proteins for its function within host cells. AvrRxv homologues YopP and YopJ from Yersinia do not have AvrRxv-specific HR-inducing activity when delivered into tomato host cells by Agrobacterium. Although YopP itself cannot induce HR, its C-terminal domain containing the catalytic residues can replace that of AvrRxv in an AvrRxv-YopP chimera for HR-inducing activity. Phylogenetic analysis indicates that the sequences encoding the C-termini of family members are evolving independently from those encoding the N-termini. Our results support a model in which there are three functional domains in proteins of the family, translocation, interaction, and catalytic.     

Suppression of Fusarium wilt of spinach with compost amendments

The effect of different organic composts on the suppression of wilt disease of spinach caused by Fusarium oxysporum f. sp. spinaciae was evaluated in a continuous cropping system in both containers and in microplot field trials. Test soils infested with the pathogen were amended with wheatbran, wheatbran and sawdust, coffee grounds, chicken manure, or mixture of different composts with and without 5% (w/w) crab shell powder either once (5%, w/w) or continuously (2.5%) into the test soils infested with the pathogen. In the container trials, the soil amended with composts became suppressive to disease development on the second and third cropping. The suppressive effect was notable in the soil amended with the mixture of compost with and without crab shell powder. The coffee compost lowered soil pH but became suppressive to the disease after modifying the soil pH. In the field trial using the mixture of the different composts containing 5% crab shell powder, a combination of 5% before the first cropping and 2.5% every second cropping gave stable disease control and promoted plant growth. After compost amendment, populations of fungi, bacteria and actinomycetes as measured by dilution plate counting and the total microbial activity as evaluated by fluorescein diacetate hydrolysis increased and population of the pathogen gradually decreased. These phenomena were especially notable in soils amended with the mixture of different composts. These results indicate that diversity in the organic materials promotes higher microbial activity and population in the soil thereby enhancing disease suppressiveness.