Detection of Ecballium elaterium in hedgerow olive orchards using a low-cost uncrewed aerial vehicle and open-source algorithms

BACKGROUND

Ecballium elaterium (common name: squirting cucumber) is an emerging weed problem in hedgerow or superintensive olive groves under no tillage. It colonizes the inter-row area infesting the natural or sown cover crops, and is considered a hard-to-control weed. Research in other woody crops has shown E. elaterium has a patchy distribution, which makes this weed susceptible to design a site-specific control strategy only addressed to E. elaterium patches. Therefore, the aim of this work was to develop a methodology based on the analysis of imagery acquired with an uncrewed aerial vehicle (UAV) to detect and map E. elaterium infestations in hedgerow olive orchards.

RESULTS

The study was conducted in two superintensive olive orchards, and the images were taken using a UAV equipped with an RGB sensor. Flights were conducted on two dates: in May, when there were various weeds infesting the orchard, and in September, when E. elaterium was the only infesting weed. UAV-orthomosaics in the first scenario were classified using random forest models, and the orthomosaics from September with E. elaterium as the only weed, were analyzed using an unsupervised algorithm. In both cases, the overall accuracies were over 0.85, and the producer's accuracies for E. elaterium ranged between 0.74 and 1.00.

CONCLUSION

These results allow the design of a site-specific and efficient herbicide control protocol which would represent a step forward in sustainable weed management. The development of these algorithms in free and open-source software fosters their application in small and medium farms. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm

This study was carried out to evaluate the advantage of preselecting SNP markers using Markov blanket algorithm regarding the accuracy of genomic prediction for carcass and meat quality traits in Nellore cattle. This study considered 3675, 3680, 3660 and 524 records of rib eye area (REA), back fat thickness (BF), rump fat (RF), and Warner–Bratzler shear force (WBSF), respectively, from the Nellore Brazil Breeding Program. The animals have been genotyped using low-density SNP panel (30 k), and subsequently imputed for arrays with 777 k SNPs. Four Bayesian specifications of genomic regression models, namely Bayes A, Bayes B, Bayes Cπ and Bayesian Ridge Regression methods were compared in terms of prediction accuracy using a five folds cross-validation. Prediction accuracy for REA, BF and RF was all similar using the Bayesian Alphabet models, ranging from 0.75 to 0.95. For WBSF, the predictive ability was higher using Bayes B (0.47) than other methods (0.39 to 0.42). Although the prediction accuracies using Markov blanket of SNP markers were lower than those using all SNPs, for WBSF the relative gain was lower than 13%. With a subset of informative SNPs markers, identified using Markov blanket, probably, is possible to capture a large proportion of the genetic variance for WBSF. The development of low-density and customized arrays using Markov blanket might be cost-effective to perform a genomic selection for this trait, increasing the number of evaluated animals, improving the management decisions based on genomic information and applying genomic selection on a large scale.     

Using midday stem water potential for scheduling deficit irrigation in mid–late maturing peach trees under Mediterranean conditions

Irrigation techniques that reduce water applications are increasingly applied in areas with scarce water resources. In this study, the effect of two regulated deficit irrigation (RDI) strategies on peach [Prunus persica (L.) Batsch cv. “Catherine”] performance was studied over three growing seasons. The experimental site was located in Murcia (SE Spain), a Mediterranean region. Two RDI strategies (restricting water applications at stage II of fruit development and postharvest) based on stem water potential (Ψ_s) thresholds (?1.5 and ?1.8 MPa during fruit growth and ?1.5 and ?2.0 MPa during postharvest) were compared to a fully irrigated control. Soil water content (θ_v), Ψ_s, gas exchange parameters, vegetative growth, crop load, yield and fruit quality were determined. RDI treatments showed significantly lower values of θ_v and Ψ_s than control trees when irrigation water was restricted, causing reductions in stomatal conductance and photosynthesis rates. Vegetative growth was reduced by RDI, as lower shoot lengths and pruning weights were observed under those treatments when compared to control. However, fruit size and yield were unaffected, and fruit quality was slightly improved by RDI. Water savings from 43 to 65 % were achieved depending on the year and the RDI strategy, and no negative carryover effect was detected during the study period. In conclusion, RDI strategies using Ψ_s thresholds for scheduling irrigation in mid–late maturing peach trees under Mediterranean conditions are viable options to save water without compromising yield and even improving fruit quality.     

Monitoring forage production for farmers’ decision making

Objective management of grazing livestock production systems needs monitoring of forage production at the managerial unit level. Our objectives were to develop a system that routinely estimates forage above-ground net primary production (ANPP) at the spatial and temporal resolution required by farmers in the Pampas of Argentina, and to facilitate adoption of the system by end users as a managerial support tool. Our approach was based on the radiation use efficiency (RUE) logic, which proposes that ANPP is determined by the amount of photosynthetically active radiation absorbed by the canopy (APAR), and the efficiency with which that energy is transformed in above-ground dry matter (radiation use efficiency, RUE). APAR is the product of incoming photosynthetically active radiation (PAR) and the fraction absorbed by the canopy (fPAR). We estimated fPAR as a non-linear function of MODIS normalized difference vegetation index (NDVI). RUE was empirically estimated for the two principal forage resources of the region, yielding the following relations: ANPP = 0.6 × APAR + 12, (R² = 0.86; p < 0.001; n = 18) for the upland sown pastures, and ANPP = 0.27 × APAR + 26, (R² = 0.74; p < 0.001; n = 18) for the lowland naturalized pastures, with ANPP in g/m²/60 days and APAR in MJ/m²/60 days. The models were able to predict independent ANPP values with acceptable accuracy. Computational procedures were automated and run in a Relational Data Base Manager System that stored and managed all the information. The system is currently monitoring 212,794 ha in 83 farms and provides monthly ANPP values for the previous month and a history of the last 6 years. The data so generated show ANPP differences between the two major forage resources, considerable variability of a given month’s ANPP among years and paddocks, and contrasting among-farm differences in the efficiency of conversion of ANPP and forage supplements into beef production. The system was well accepted by end users who utilize it mainly for making near real time decisions according to last month ANPP, and explaining results of previous production cycles by incorporating ANPP as an explicative variable. However, there were differences among farmers in the degree of utilization, apparently related to the advisor’s attitude toward this new technology. Our results indicate that (1) forage production of large extensions can be monthly monitored at the paddock level by a small laboratory with capabilities in geographic information systems, and (2) advisors and farmers apply this information to their managerial decisions.     

Measuring versus estimating net radiation and soil heat flux: Impact on Penman–Monteith reference ET estimates in semiarid regions

The standardized ASCE Penman–Monteith and FAO-56 equations were used to estimate reference evapotranspiration (ET₀) using estimated and measured net radiation (R_n) and soil heat flux (G), based on hourly and daily meteorological data. The estimates were evaluated against lysimeter measurements. The results indicate that using measured or estimated values of R_n and G can have significant effect on the accuracy of the ET₀ estimations, especially when calculations were made on an hourly basis. The FAO-56 version performed very well during the irrigation season on a daily basis. The use of measured R_n and G did not improve ET₀ estimation on a daily basis, therefore, the use of estimated R_n and G appears to be dependable when calculations are based on 24-h weather data. When daily ET₀ was calculated from hourly estimations, the results were different depending on the version used. The ASCE version was more accurate, especially when R_n and G were measured. Therefore, measurement of R_n and G may have potential to improve estimation only when daily ET₀ is calculated from hourly estimations. The PM FAO-56 version was always a little less accurate than the ASCE version. For hourly calculations, using a constant surface resistance (as in FAO-56 version), the PM method underpredicted for high evaporative demand and vice versa. The ASCE version performed better than PM FAO-56 version when R_n and G were measured and estimated. Therefore, ASCE version tended to provide quite accurate values of hourly ET₀, even using estimated values of R_n and G. As conclusion, the methods proposed by FAO-56 for estimating R_n and G tended to produce accurate estimates for daily and hourly ET₀ under semiarid conditions and can be used with some degree of confidence for estimating ET₀. In addition, results suggest that the ASCE standardized equation on an hourly basis improved the accuracy of ET₀ estimation with respect to the FAO-56 version.     

SIRIAS: a simulation model for sprinkler irrigation

Uniformity of distribution in irrigation systems plays an important role in the optimum use of irrigation water, with direct repercussions on water-use efficiency and production. To evaluate the effects of the wind on sprinkler water uniformity, it is necessary to measure infield water distribution under different wind conditions and then calculate the parameters that define water distribution. This paper perfects the SIRIAS simulation model for sprinkler systems, which can be used to design new irrigation installations or to improve existing ones. Using ballistic theory to simulate the trajectory of drops discharged by the sprinkler, the model obtains wind-distorted water distribution, with a new formulation for the air drag coefficient. It takes into account three options to distribute the evaporation and drift losses in the irrigation process. SIRIAS software has been programmed using Delphi language for Windows 95, 98 and NT.     

Artificial inoculation and susceptibility of Pinus armandii to Dothistroma septosporum

Dothistroma needle blight (DNB) is a serious needle disease of conifers that primarily affects pine species (Pinus spp.). Dothistroma septosporum is one of the DNB pathogens that has a diverse range of host species excluding Pinus armandii. In 15 inoculated P. armandii seedlings, D. septosporum acervuli were observed in 43 infected needles of ten seedlings with a mean disease severity of 1.11% at 25 weeks after inoculations, demonstrating the potential of D. septosporum to cause symptoms on the needles of P. armandii via artificial inoculation. The disease severity of P. armandii was similar to the positive control, Pinus nigra (median 0.75 for P. armandii to 0.70 for P. nigra), thus, P. armandii acts under artificial conditions as a susceptible host species.     

Multivariate analysis of invasive plant species distributions in southern US forests

Landscape Ecology - Invasive plants cause significant impacts in forested areas throughout the world. However, little is known about the relative importance of environmental drivers on the...     

Contrasting edge and pasture matrix effects on ant diversity from fragmented landscapes across multiple spatial scales

Landscape Ecology - Harmful effects of habitat loss and fragmentation can be detected across multiple spatial scales, yet most studies that aim to characterize these effects take place at a single...