Glacial refugia: hotspots but not melting pots of genetic diversity

Glacial refuge areas are expected to harbor a large fraction of the intraspecific biodiversity of the temperate biota. To test this hypothesis, we studied chloroplast DNA variation in 22 widespread European trees and shrubs sampled in the same forests. Most species had genetically divergent populations in Mediterranean regions, especially those with low seed dispersal abilities. However, the genetically most diverse populations were not located in the south but at intermediate latitudes, a likely consequence of the admixture of divergent lineages colonizing the continent from separate refugia.     

Rising atmospheric CO2 reduces sequestration of root-derived soil carbon

Forests have a key role as carbon sinks, which could potentially mitigate the continuing increase in atmospheric carbon dioxide concentration and associated climate change. We show that carbon dioxide enrichment, although causing short-term growth stimulation in a range of European tree species, also leads to an increase in soil microbial respiration and a marked decline in sequestration of root-derived carbon in the soil. These findings indicate that, should similar processes operate in forest ecosystems, the size of the annual terrestrial carbon sink may be substantially reduced, resulting in a positive feedback on the rate of increase in atmospheric carbon dioxide concentration.     

The complete genome sequence of Propionibacterium acnes, a commensal of human skin

Propionibacterium acnes is a major inhabitant of adult human skin, where it resides within sebaceous follicles, usually as a harmless commensal although it has been implicated in acne vulgaris formation. The entire genome sequence of this Gram-positive bacterium encodes 2333 putative genes and revealed numerous gene products involved in degrading host molecules, including sialidases, neuraminidases, endoglycoceramidases, lipases, and pore-forming factors. Surface-associated and other immunogenic factors have been identified, which might be involved in triggering acne inflammation and other P. acnes-associated diseases.     

Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesin

Adherence by Helicobacter pylori increases the risk of gastric disease. Here, we report that more than 95% of strains that bind fucosylated blood group antigen bind A, B, and O antigens (generalists), whereas 60% of adherent South American Amerindian strains bind blood group O antigens best (specialists). This specialization coincides with the unique predominance of blood group O in these Amerindians. Strains differed about 1500-fold in binding affinities, and diversifying selection was evident in babA sequences. We propose that cycles of selection for increased and decreased bacterial adherence contribute to babA diversity and that these cycles have led to gradual replacement of generalist binding by specialist binding in blood group O-dominant human populations.     

Simultaneous measurement of soil organic and inorganic carbon: evaluation of a thermal gradient analysis

Purpose

The best method for determining soil organic carbon (SOC) in carbonate-containing samples is still open to debate. The objective of this work was to evaluate a thermal gradient method (ThG), which can determine simultaneously inorganic carbon (SIC) and SOC in a wide range of soil samples.

Materials and methods

The determination of SOC by ThG (SOC_ThG) was compared to the following widespread standard methods: (1) acidification (ACI) as pretreatment and subsequent dry combustion (SOC_ACI) and (2) volumetric quantification of SIC by a calcimeter (CALC) and subtraction of the total carbon content as determined by dry combustion (SOC_CALC). Precision (F test) and bias (t test) were tested on a subset of seven samples (n?=?3). Comparison of the ThG and CALC methods was performed by regression analysis (n?=?76) on samples representing a wide range of SOC (5.5 to 212.0 g kg^?1) and SIC (0 to 59.2 g kg^?1) contents.

Results and discussion

Tests on the replicated subset showed that the precision of ThG was not significantly different from ACI or CALC (F values?<?39, n?=?3) for SOC and SIC measurements. However, SOC_ACI and SOC_CALC contents were systematically and significantly lower compared to SOC_ThG contents. The positive bias for SOC_ThG relative to SOC_CALC contents appeared also in the regression analysis (given numbers?±?standard errors) of the whole data set (y?=?(4.67?±?0.70)?+?(0.99?±?0.01)x, R ²?=?0.99, n?=?76). When performing a regression with carbonate-free samples, the bias between the methods was negative (?2.90?±?0.63, n?=?29) but was positive in the set with carbonate-containing samples (3.95?±?1.41, n?=?47). This observation corroborated the suspicion that the use of acid for carbonate decomposition can lead to an underestimation of SOC.

Conclusions

All methods were suitable for differentiation between SIC and SOC, but the use of acid resulted in lower estimates of SOC contents. When comparing soil samples with different carbonate concentrations, the use of the ThG method is more reliable.