On a razor's edge: Status and prospects of the critically endangered Bellinger River snapping turtle,Myuchelys georgesi

1. In the summer and autumn of 2015, the Bellinger River snapping turtle (Myuchelys georgesi), a narrow‐range endemic of eastern New South Wales, Australia, suffered mass mortality from epidemic disease, apparently caused by a previously unknown virus. Information on the current population size and structure of M. georgesi, and the body condition and growth of the surviving individuals, is needed to support planning of conservation actions. Population estimates are also needed for a sympatric population of the widely distributed Macquarie turtle (Emydura macquarii), which has probably been introduced to the Bellinger River and may threaten the persistence of M. georgesi through hybridization, competition, and disease transmission.
2. Data from five turtle surveys between November 2015 and November 2018 were used to estimate populations of the two species in the Bellinger River by an analysis based on habitat extent and turtle detectability. Changes in the body condition of M. georgesi and the body growth of both species were also assessed.
3. Current populations of ~150 M. georgesi and ~500 E. macquarii are indicated, although the uncertainty of these estimates is high. The estimate for M. georgesi represents a decline of >90% from the historical population. Moreover, about 88% of the surviving M. georgesi are immature, and only about 5% are mature females. However, the body condition of the survivors has improved recently. Growth models suggest that M. georgesi matures later than E. macquarii, which may provide the latter with a competitive advantage.
4. Evidence presented here does not support a previous hypothesis that M. georgesi were predisposed to disease through malnutrition and consequently reduced immune competence caused by high water temperatures and low river flows. Continuing disease, hybridization, and interspecific competition are probably the greatest threats to the persistence of the species.

     

Deep Subseafloor Fungi as an Untapped Reservoir of Amphipathic Antimicrobial Compounds

The evolving global threat of antimicrobial resistance requires a deep renewal of the antibiotic arsenal including the isolation and characterization of new drugs. Underexplored marine ecosystems may represent an untapped reservoir of novel bioactive molecules. Deep-sea fungi isolated from a record-depth sediment core of almost 2000 m below the seafloor were investigated for antimicrobial activities. This antimicrobial screening, using 16 microbial targets, revealed 33% of filamentous fungi synthesizing bioactive compounds with activities against pathogenic bacteria and fungi. Interestingly, occurrence of antimicrobial producing isolates was well correlated with the complexity of the habitat (in term of microbial richness), as higher antimicrobial activities were obtained at specific layers of the sediment core. It clearly highlights complex deep-sea habitats as chemical battlefields where synthesis of numerous bioactive compounds appears critical for microbial competition. The six most promising deep subseafloor fungal isolates were selected for the production and extraction of bioactive compounds. Depending on the fungal isolates, antimicrobial compounds were only biosynthesized in semi-liquid or solid-state conditions as no antimicrobial activities were ever detected using liquid fermentation. An exception was made for one fungal isolate, and the extraction procedure designed to extract amphipathic compounds was successful and highlighted the amphiphilic profile of the bioactive metabolites.     

Accumulation of nitrate: a cultivar-linked property with celeriac (Apium graveolens L.var. rapaceum)

The nitrate content of different cultivars of celeriac was determined during the three years. The results showed very high variations. Some cultivars always showed a relatively high content, others a relatively low.Research subsidized by the Instituut tot Aanmoediging van het Wetenschappelijk Onderzoek in Nijverheid en Landbouw (I.W.O.N.L.).     

Trypanosomosis: a priority disease in tsetse-challenged areas of Burkina Faso

Trypanosomosis is an important disease affecting humans as well as animals. It remains a big constraint to livestock productions in tropical areas. The objective of this study was to assess the importance of trypanosomosis among cattle diseases in Burkina Faso, mainly in tsetse-challenged areas, and to capture information on how farmers apply available methods for controlling the disease. A survey has been carried out in 29 villages of Burkina Faso in three regions (north, southwest, and west regions). One hundred and thirty-four cattle breeders were interviewed individually with a questionnaire. The results indicate that among the 16 diseases mentioned by cattle breeders, trypanosomosis is the most important one in tsetse-challenged areas. Overall, 76.12 % of the breeders mentioned it as the most important disease, while 54.55 % of the farmers in the southwest region and 70.91 % of the farmers in the west region ranked it as a priority disease. Chemoprophylaxis/chemotherapy is widely used as a control method. Isometamidium chloride and diminazene aceturate were used by 53.49 and 46.52 % of the responders, respectively. Among farmers, 85.55 % ranked diminazene aceturate as the less efficient while 14.45 % ranked isometamidium chloride as the most efficient trypanocid. Trypanocidal drug quality and drug resistance were raised as a major concern by 30.77 and 50 % of the respondents, respectively. According to them, zebu cattle are more susceptible to trypanosomosis than taurine Baoule cattle and their crosses with zebu, emphasizing that crossing susceptible breeds with trypanotolerant ones, could be used as part of an integrated control strategy.     

Spatial distribution,total length frequencies and otolith morphometry as tools to analyse the effects of a flash flood on populations of roach (Rutilus rutilus)

Floods are known to be the major source of natural variability and disturbance in stream ecosystems. However, the management and channelisation of large rivers have impacted the fluvial geomorphology and disconnected the main channel and floodplains used as nurseries by many species of fish. This study examines the influence of a first autumnal flood event of the Ardèche River on the roach population, Rutilus rutilus (Linnaeus, 1758), in the Caderousse reach on the Rhône River. This influence was evaluated through an analysis of the spatial distribution for the abundance and size of juvenile roach and an analysis of otolith shape. Juvenile roach from the three sections of the reach formed well‐defined local populations before and after the flood event. Juvenile roach were always more abundant in the less modified section (BPS) of the river than in the other sections (RES and TAIL). While the original primary river channel was directly impacted by the flash flood, no significant difference in otolith shape was observed before or after the flash flood. Our results suggest that this part of the reach provides refuge habitats used by fish during high flow events.     

Temporal and spatial variability of enantiomeric fractions (EFs) of chiral organochlorines in relation to soil properties

Purpose

The scope of this article was to investigate the spatial and temporal variability of enantiomeric fractions (EFs) of persistent organic pollutants (POPs) in soil compared to the uncertainty of the analytical data.

Materials and methods

Soil samples were taken with high spatial resolution at two sites in Czech Republic in 2008 to investigate variability on a small spatial scale. In addition, composite soil samples were taken from ten sites in 2005 and 2008 to investigate temporal variations. All samples were analysed for a suite of soil properties as well as concentrations and EFs of polychlorinated biphenyl (PCB) -95, PCB-132 and PCB-149; α-hexachlorocyclohexane (HCH); o,p′-dichlorodiphenyltrichloroethane (DDT); and o,p′-dichlorodiphenyldichloroethane (DDD).

Results and discussion

Median EFs of PCB-95 and PCB-149, α-HCH, o,p′-DDT and o,p′-DDD did not change significantly on the sites sampled in 2005 and again in 2008, while PCB-132 changed from EF?=?0.38 to EF?=?0.53. The sampling methodology is therefore very important, and composite samples will not be the best option if enantioselective degradation processes are investigated. Non-racemic EFs of POPs in the subsampled sites in 2008 were correlated to soil parameters, such as total organic carbon (TOC), total nitrogen and humic acids. These parameters are site specific and might vary on a small scale. This can explain why certain soil parameters are reported as significantly correlated with non-racemic EFs of chiral POPs in some studies, but not always in other similar studies.

Conclusions

While composite samples may still represent the overall prevailing EF range, they are not ideally suited to study enantiomeric degradation processes, which are taking place at a relative small scale, depending on the heterogeneity of soil parameters such as TOC, total organic nitrogen (TON) and humic acids.

     

Influence of DCD and DMPP on soil N dynamics after incorporation of vegetable crop residues

We have investigated the effect of two nitrification inhibitors, 3,4-dimethylpyrazole phosphate (DMPP) and dicyandiamide (DCD), on the accumulation of and after incorporation of cauliflower residues in incubation experiments. Cauliflower leaves were incubated with soil and DCD or DMPP at two application rates [8.93 and 17.9 mg active component (ac) kg⁻¹ for DCD; 0.89 and 1.79 mg ac kg⁻¹ for DMPP]. Both doses of DCD and DMPP increased on average by 18.9 and 26.0 mg N kg⁻¹ for DCD1 (during 30 days) and DCD2 (during 45 days), respectively, and on average by 14.4 mg N kg⁻¹ for DMPP1 and DMPP2 during a period of at least 95 days. In DCD-treated soils, data followed an S-shaped curve, indicating that nitrification restarted during the experiment: inhibition was on average 24% during 35 days for DCD1 and on average 45% during 49 days for DCD2. Thereafter, amount in DCD-treated soils exceeded that of the cauliflower-only treatment by 31% for DCD1 and 78% for DCD2, probably due to a nitrogen release from DCD itself and a priming effect induced by DCD. In DMPP-treated soils, data followed a linear pattern since nitrification was inhibited during the complete incubation (95 days): inhibition was on average 56 and 64% for DMPP1 and DMPP2, respectively. DMPP did not affect the N mineralization of the crop residues. Under favourable conditions, DCD is able to inhibit the nitrification from crop residues for 50 days and DMPP for at least 95 days. Hence, especially DMPP shows a potential to reduce leaching after incorporation of crop residues.     

Reduced tillage effects on physical properties of silt loam soils growing root crops

In the scope of the increasing concern for soil conservation, reduced tillage (RT) agriculture is growing more important in today's agriculture in Western Europe. However, crop rotations often include beets and potatoes, crops that are generally assumed to be less suitable under RT agriculture because they result in a high disturbance of the soil at the formation of the ridges and at harvest. Therefore, the short- and long-term effect of RT agriculture on bulk density (BD), water retention curve (WRC), aggregate stability and field-saturated hydraulic conductivity of silt loam soils with crop rotations including root crops was evaluated. Ten fields at seven locations representing the important RT types, applied for a different number of years, and eight fields under conventional tillage (CT) agriculture with similar soil type and crop rotation were selected. At each location, BD of the 5–10 cm layer was mostly lower in the RT fields (1.42 ± 0.05 Mg m⁻³ [average with standard deviation]) compared to the CT fields (1.44 ± 0.09 Mg m⁻³) and the water content at saturation was mostly higher (0.394 ± 0.027 m³ m⁻³ and 0.382 ± 0.021 m³ m⁻³ for RT and CT fields, respectively). No differences in BD (1.53 ± 0.03 Mg m⁻³) or WRC could be found in the 25–30 cm soil layer when comparing the RT with the CT fields. The stability index of the 0–10 cm layer measured by ‘dry and wet sieving’ [De Leenheer, L., De Boodt, M., 1959. Determination of aggregate stability by the change in mean weight diameter. Mededelingen van landbouwhogeschool en de opzoekingstations van de staat te Gent 24, 290–300] was 40% higher under RT than CT agriculture. The mean weight diameter (MWD) [Le Bissonnais, Y., 1996. Aggregate stability and assessment of soil crustability and erodibility: I. Theory and methodology. Eur. J. Soil Sci. 47, 425–437] was significantly higher even after short-term RT compared to CT agriculture. The MWD after a heavy shower, a slow wetting of the soil and stirring the soil after prewetting was 19%, 38% and 34% higher for RT than CT fields, respectively. The field-saturated hydraulic conductivity tended to be higher under RT compared to the CT fields. Despite the high disturbance of the soil every 2 or 3 years of crop rotations including sugar beets or potatoes, RT agriculture had a positive effect on the investigated physical soil properties.