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Pronounced fluctuations of spruce bark beetle (Scolytinae: Ips typographus) populations do not invoke genetic differentiation

The dynamics of a recent outbreak of the spruce bark beetle (Ips typographus) in Switzerland was ruled by a devastating winter storm in 1999 and the drought and heat of the summer 2003. Starting from a similar level of population sizes, estimated as the rate of infested growing stock, beetle populations increased differently in magnitude and time among different regions in Switzerland. Accordingly, we expected local or regional genetic differentiation as a result of such repeated population expansion/breakdown dynamics. We analyzed 5 nuclear microsatellites of spruce bark beetles sampled from pheromone traps at 30 locations distributed over Switzerland. Our genetic results did not indicate any sign of population differentiation, structure, isolation by distance, or recent bottlenecks. This complete lack of genetic structure suggests that spruce bark beetles are highly mobile, precluding the formation of a spatial structure at neutral molecular markers. Thus, this molecular–genetic approach does not allow us to discriminate among regional gene pools and to identify the origin of expanding beetle populations.     

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees

The determination of the chimpanzee genome sequence provides a means to study both structural and functional aspects of the evolution of the human genome. Here we compare humans and chimpanzees with respect to differences in expression levels and protein-coding sequences for genes active in brain, heart, liver, kidney, and testis. We find that the patterns of differences in gene expression and gene sequences are markedly similar. In particular, there is a gradation of selective constraints among the tissues so that the brain shows the least differences between the species whereas liver shows the most. Furthermore, expression levels as well as amino acid sequences of genes active in more tissues have diverged less between the species than have genes active in fewer tissues. In general, these patterns are consistent with a model of neutral evolution with negative selection. However, for X-chromosomal genes expressed in testis, patterns suggestive of positive selection on sequence changes as well as expression changes are seen. Furthermore, although genes expressed in the brain have changed less than have genes expressed in other tissues, in agreement with previous work we find that genes active in brain have accumulated more changes on the human than on the chimpanzee lineage.     

Soil and phosphorus redistribution along a steep tea plantation in the Feitsui reservoir catchment of northern Taiwan

Feitsui reservoir, the major water supply of Taipei city, has shown declining water quality in recent years. The reservoir is located in an area famous for tea cultivation, and the question arises as to whether the hillside tea plantations have contributed to increased sediment and nutrient discharge into the reservoir. In this study, soil and phosphorus redistribution were examined along a steep tea plantation in the reservoir's catchment and the provenance of reservoir sediment was assessed. Fallout radionuclides were used as soil erosion/deposition tracers and as markers of sediment sources. Continuous fertilizer application has raised (inorganic) phosphorus levels in the studied tea plantation. The plantation's narrow bench terraces trap eroded material and slow down soil and nutrient translocation. Nevertheless, eroded soil and phosphorus have accumulated on a vegetated toeslope below the tea plantation. The reservoir sediment contained significant amounts of inorganic phosphorus and cesium-137, and application of a mixing model resulted in a surface soil contribution of approximately 30%. This points towards tea plantations as possible sediment and pollutant sources and underlines the necessity of soil conservation strategies, such as the maintenance of vegetated riparian buffer zones. However, other sources, such as landslide debris and urban wastewaters, cannot be entirely ruled out. Further research is needed to better characterize the catchment's soils and sediments and to improve sediment fingerprinting efforts. Potential point and non-point pollution sources need to be examined in detail to better understand how phosphorus enters the reservoir.     

Molecular characterization of Listeria monocytogenes and the significance for food hygiene

Research on the pathogen Listeria monocytogenes is a key issue both for the clinical and the food microbiologist owing to the unique pathway of infection and the exposure of humans via contaminated foods. Although, in Austria, the incidence of listeriosis is about 870-fold lower than the incidence for Salmonella infection, the food law manages both foodborne pathogens with a comparable stringency. The current risk management is based on the assumption that environmental L. monocytogenes isolates, from which the pool of "foodborne" isolates is recruited, are of similar pathogenicity compared to clinical and outbreak isolates. This verdict became doubted in the recent years. Characterization of L. monocytogenes by virulence gene sequencing, virulence studies in vivo and in vitro and by molecular typing was considerably stimulating the discussion on virulence variability in L. monocytogenes. This article provides insights in the value of epidemiological follow-up studies by presenting a typing study on 15 cases of listeriosis observed in a district hospital in Turkey. Furthermore results from typing L. monocytogenes either by virulence gene sequencing, mismatch amplification mutation assay or by pulsed field gel electrophoresis are discussed. The close interaction of molecular microbiology with food microbiology both in applied and basic science is currently creating a new discipline of molecular food microbiology. We are convinced that veterinary medicine will contribute to this exiting development in a fruitful way.     

Soil heterogeneity at the field scale: a challenge for precision crop protection

Crop protection seldom takes into account soil heterogeneity at the field scale. Yet, variable site characteristics affect the incidence of pests as well as the efficacy and fate of pesticides in soil. This article reviews crucial starting points for incorporating soil information into precision crop protection (PCP). At present, the lack of adequate field maps is a major drawback. Conventional soil analyses are too expensive to capture soil heterogeneity at the field scale with the required spatial resolution. Therefore, we discuss alternative procedures exemplified by our own results concerning (i) minimally and non-invasive sensor techniques for the estimation of soil properties, (ii) the evidence of soil heterogeneity with respect to PCP, and (iii) current possibilities for incorporation of high resolution soil information into crop protection decisions. Soil organic carbon (SOC) and soil texture are extremely interesting for PCP. Their determination with minimally invasive techniques requires the sampling of soils, because the sensors must be used in the laboratory. However, this technique delivers precise information at low cost. We accurately determined SOC in the near-infrared. In the mid-infrared, texture and lime content were also exactly quantified. Non-invasive sensors require less effort. The airborne HyMap sensor was suitable for the detection of variability in SOC at high resolution, thus promising further progress regarding SOC data acquisition from bare soil. The apparent electrical conductivity as measured by an EM38 sensor was shown to be a suitable proxy for soil texture and layering. A survey of arable fields near Bonn (Germany) revealed widespread within-field heterogeneity of texture-related ECa, SOC and other characteristics. Maps of herbicide sorption and application rate were derived from sensor data, showing that optimal herbicide dosage is strongly governed by soil variability. A phytoassay with isoproturon confirmed the reliability of spatially varied herbicide application rates. Mapping areas with an enhanced leaching risk within fields allows them to be kept free of pesticides with related regulatory restrictions. We conclude that the use of information on soil heterogeneity within the concept of PCP is beneficial, both economically and ecologically.     

Intraspecific Relationship of Plasmopara halstedii Isolates Differing in Pathogenicity and Geographic Origin Based on ITS Sequence Data

Sequence parts of the internal transcribed spacer (ITS) region of nuclear ribosomal DNA were analysed to screen for the intraspecific variability of a non-coding genomic region in 15 Plasmopara halstedii populations of different pathotype and geographic origin. Samples revealed uniformity in a ca. 790 Bp fragment comprising of the ITS-1, 5.8S and front parts of the ITS-2. In contrast, clear differences were found in a ca. 810 Bp fragment of the ITS-2 thus allowing differentiation between populations of pathotype 100, 310 and 330 and a group of populations representing pathotypes 700, 701, 703, 710 and 730. Samples of pathotypes 700 to730 originated from Slovakia, France, and Germany, but were uniform in both ITS sequence parts, thus indicating very recent origin of these highly aggressive physiological races. The potential use of ITS sequences for pathotype differentiation and phylogenetic studies in P. halstedii is discussed.     

Ergosterol biosynthesis inhibitors. An overview of their history and contribution to medicine and agriculture

Over the past 15 years, an increasing number of ergosterol biosynthesis inhibitors (EBIs) have been introduced in crop protection as fungicides, and in medicine as fungicides and bactericides. Their spectrum of activity and their systemic properties vary widely, depending on structural elements. By their high protective and curative activity the EBIs have greatly improved the level of disease control, both in plants and in man. However, the chemical and biological potential of this group has not yet been fully explored, particularly in the field of growth regulation.     

Black Carbon in Fly-Ash Influenced Soils of the Dübener Heide Region,Central Germany

Due to long-lasting historic fly-ash deposition from lignite-fired power plants, soils of forest ecosystems in Central Germany have been affected by a variety of contaminants. In addition to heavy metals and oxides, another fly-ash compound is Black carbon (BC) which supposedly has been accumulated as well. BC as a generic term describing different forms of pyrogenetic carbon is considered as a very stable fraction of the C cycle. In this study, BC content of organic layers of 38 sites from two adjacent forested areas was determined using a simplified benzenepolycarboxylic acid (BPCA) method. Considerable amounts of BC were detected in both areas. It accounted for up to 11.2 and 15.6% of total organic carbon (TOC) in the Oe and Oa horizons, respectively. On average, slightly higher BC contents were found in the Oe (23.0 g BC kg^?1), whereas BC/TOC ratios were higher in the Oa. The BC/TOC ratio of the Oe horizon tended to decrease with increasing distance from the former main emitters. In contrast to expectations, BC contents of the Oa horizon tended to increase with increasing distance. The deposition gradient, in previous research found for other fly-ash compounds, could not be observed for BC. Higher values in more remote forests might be taken as an indicator for the influence of additional emission sources. Further research is needed to confirm the results and to elucidate the potential impact of (soot-) BC on humus dynamics in the study area.