Calibration and validation of SALTMED model under dry and wet year conditions using chickpea field data from Southern Portugal

The SALTMED model is one of the few available generic models that can be used to simulate crop growth with an integrated approach that accounts for water, crop, soil, and field management. It is a physically based model using the well-known water and solute transport, evapotranspiration, and water uptake equations. In this paper, the model simulated chickpea growth under different irrigation regimes and a Mediterranean climate. Five different chickpea varieties were studied under irrigation regimes ranging from rainfed to 100 % crop water requirements, in a dry and a wet year. The calibration of the model using one of the chickpea varieties was sufficient for simulating the other varieties, not requiring a specific calibration for each individual chickpea variety. The results of calibration and validation of the SALTMED model showed that the model can simulate very accurately soil moisture content, grain yield, and total dry biomass of different chickpea varieties, in both wet and dry years. This new version of the SALTMED model (v. 3.02.09) has more features and possibilities than the previous versions, providing academics and professionals with a very good tool to manage water, soil, and crops.     

Resistance of tomato accessions from the horticulture germplasm bank to red spider mites: exploring mite preference patterns and antixenosis mechanism

The red spider mite Tetranychus evansi can cause up to 90% yield losses to tomato crops. Mechanisms and causes of plant resistance to this pest could contribute to improved planning of plant breeding programs that prevent damage by this pest. It is known that the morphology and chemical compounds present in tomato plants are important to Tetranychus spp. success. This study aims at evaluating the resistance of 84 arbitrarily chosen tomato accessions – obtained from the Horticulture Germplasm of the Universidade Federal de Viçosa (HGB-UFV), Minas Gerais State, Brazil – to T. evansi. We evaluated the number of spider mites per leaf disk, number of trichomes/mm2, and the concentration of hydrocarbons of leaf disk. A significant difference in the number of T. evansi adults/leaf disk was found among accessions. The resistance mechanism of the HGB-UFV accessions was determined to be antixenosis. Accessions 2004, 2098, 2121, and 2100 had higher trichome density and the lowest adult T. evansi per tomato leaf disk. For this reason, these accessions should be chosen as sources of resistance in plant breeding programs. The hydrocarbons C₁₁, C₁₃, and C₂₂ had a negative correlation with T. evansi adults per leaf disk.     

Genetic diversity,population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement

Rice genetic resources conservation and evaluation is crucial to ensure germplasm sources for further crop breeding. We conducted a wide collection of Oryza species in Niger and characterize its diversity with microsatellites (or simple sequence repeats, SSR). The aims of this research were to get a better understanding of the extent of genetic diversity, its structure and partition within rice eco-geographical zones of Niger. There were 264 accessions found in farmers’ and other fields: 173 O. sativa (Asia’s rice), 65 O. glaberrima (Africa’s rice), 25 O. barthii, and 1 O. longistaminata (weedy perennial rice), which were genotyped with 18 SSR. A total of 178 alleles were detected, with a mean of 9.89 alleles per locus. The polymorphism information content was 0.65 and heterozygosity was estimated as 0.14. Two main well-differentiate genotypic groups, which correspond to Asian and African rice species, were identified. The SSR set divided the Asia’s rice group (solely indica) into irrigated and floating rice, with rainfed lowland rice in between. The African rice species group was composed of O. glaberrima, O. longistaminata and O. barthii accessions, but without any clear genetic differentiation among them likely due admixtures within the samples of O. barthii. Five accessions that could be natural interspecific hybrids were too admixed for assigning them to any of the two well-differentiated groups. The partitioning of the overall diversity showed that maximum variation was within genotypic groups and subgroups or cropping ecologies, rather than between eco-geographical zones. The eco-geographical distribution of the diversity suggests germplasm exchange in Niger. Next-steps for conserving rice and crop wild relatives in Niger could be taken using the findings of this research.     

Magnetic spherules in sediments of the karstic Dobra River (Croatia)

Purpose

The paper describes an unusual finding of magnetic particles in stream sediments of the karstic Dobra River (Croatia). It aims to investigate the magnetic susceptibility properties of river sediments and to find links with their mineralogical and chemical composition. The goal of our research was to suggest the possible origin of magnetic particles in the river sediments within the Dinaric karst region, which to our knowledge was not exposed to metal manufacturing processes.

Materials and methods

A preliminary, exploratory sediment sampling programme was undertaken. Sediments were collected near the channel bank (from the top layer) at 16 representative stations distributed along the length of the Dobra River (110 km). Sediments were air-dried and passed through 2-mm and 63-μm sieves, and analysed for magnetic susceptibility (and Curie temperature), isothermal remanent magnetism (IRM), stereo-microscopy of separated magnetic grains, mineralogical analysis (using X-ray diffraction), and chemical analysis (using inductively coupled plasma–mass spectrometry).

Results and discussion

Increased magnetic susceptibility and IRM values were observed mostly in the sediments of the Upper Dobra. Thermomagnetic curves show a distinctive Curie-point of magnetite at 580 °C. Additional transformation observed at 520–560 °C derives from titanomagnetite. There was no significant correlation between magnetic susceptibility and Fe. Magnetic particles from the Dobra River sediments contain pyroxene, plagioclase, hematite and quartz, in addition to magnetite. White spherules within magnetic grains are also present. The major constituent of five separated magnetic spherules is Fe; the minor constituents are Al, Ca, Mg and Si, and there are numerous trace elements (Ba, Cr, K, Mn, Na, Ni, Ti and V). The ratio Ni/ Fe versus Cr/Fe suggests that the magnetic spherules are impactites.

Conclusions

Magnetic spherules were discovered for the first time in stream sediments of the sinking karstic Dobra River, a region where anthropogenic sources for that contribution are absent. Preliminary results point to a possible impactite, formed either by a shock event caused by a meteorite impact or by volcanic processes. The presence of magnetic spherules in the fluvial sediments of the Upper Dobra River represents a new and exciting finding and deserves further field work and laboratory research.     

Emission of Volatile Organic Compounds and Greenhouse Gases from the Anaerobic Bioremediation of Soils Contaminated with Diesel

Episodes of pollution resulting from high concentrations of environmental ozone frequently occur in different parts of the world. The ozone can affect human health, natural vegetation, and agricultural productivity. The monitoring of ozone concentrations is essential to aid investigation of its effects and it is also required to assess progress in public management of this pollutant. A new effective and simple technique is presented for the determination of ambient ozone concentrations using a visual procedure. The method is based on the reaction between the dye indigo and ozone, with the formation of colorless products. The bleaching intensity is proportional to the amount of ozone. An indigo color standard scale was developed with the utilization of digital image-based (DIB) calibration and printed as a wheel-chart test kit. Ozone sampling is performed using a passive sampler containing a filter impregnated with indigo. The amount of reacted ozone can be determined by visual comparison using the wheel-chart test kit. The method enables determination of ozone concentrations from 2 to 97 ppb, with intervals of 3 ppb. It does not require an energy source or any post-sampling chemical treatment or analysis, and the ozone concentration can be known immediately, in situ, at the end of the sampling period. The method offers substantial advantages in large-scale mapping and monitoring of ozone or measurements concerning occupational exposure to ozone.     

First report of Neophloeospora maculans causing leaf spots in Morus nigra and M. alba in Brazil

Journal of Plant Diseases and Protection - Mulberry (Morus spp.), represents a set of plants grown in Brazil for production of fruits, leaves for feeding silkworms and ruminant animals, and for...     

Considering evolutionary processes in adaptive forestry

Context

Managing forests under climate change requires adaptation. The adaptive capacity of forest tree populations is huge but not limitless. Integrating evolutionary considerations into adaptive forestry practice will enhance the capacity of managed forests to respond to climate-driven changes.

Aims

Focusing on natural regeneration systems, we propose a general framework that can be used in various and complex local situations by forest managers, in combination with their own expertise, to integrate evolutionary considerations into decision making for the emergence of an evolution-oriented forestry.

Methods

We develop a simple process-based analytical grid, using few processes and parameters, to analyse the impact of forestry practice on the evolution and evolvability of tree populations.

Results

We review qualitative and, whenever possible, quantitative expectations on the intensity of evolutionary drivers in forest trees. Then, we review the effects of actual and potential forestry practice on the evolutionary processes. We illustrate the complexity of interactions in two study cases: the evolutionary consequences for forest trees of biotic interactions and of highly heterogeneous environment.

Conclusion

Evolution-oriented forestry may contribute adapting forests to climate change. It requires combining short-term and long-term objectives. We propose future lines of research and experimentation.     

Yield and water productivity of five chickpea varieties under supplemental irrigation in contrasting years

Chickpea (Cicer arietinum L.) is one of the most important pulse crops in the world, cultivated on a wide range of environments. In Mediterranean regions, it is traditionally grown as a spring-sown rainfed crop, very dependent on rainfall. In this situation, supplemental irrigation can improve significantly the crop yield. The objective of this study was to evaluate the improvement on chickpea crop yield and water productivity (WP) of five chickpea varieties with supplemental irrigation, in the Mediterranean conditions, with both dry and wet years. Field tests were carried out over two cropping seasons, in Southern Portugal, using three kabuli-type and two desi-type chickpea varieties and four irrigation treatments, corresponding to 100, 50, 25 % of crop irrigation requirements (IR) and rainfed. The results show that all chickpea varieties responded to supplemental irrigation with the increase in grain and biomass yield. However, the magnitude of individual chickpea response depends on the year and the genotype. In 2009, a dry year, the highest WP values were attained at the 50 % IR treatment, whereas in 2010, a wet year, it was the rainfed treatment that showed the highest WP values. The Elixir variety showed the best grain yields and water productivity.     

Vaccination using phase I vaccine is effective to control Coxiella burnetii shedding in infected dairy cattle herds

The effectiveness of the vaccination of dairy cows combined or not with antibiotics (i.e. oxytetracycline) to control Coxiella burnetii (Cb) shedding at herd level was investigated in 77 Q fever clinically affected herds. In addition to nulliparous heifers’ vaccination, one out of the four following medical strategies was randomly assigned to dairy cows in each herd: vaccination (using a phase I vaccine) alone, vaccination combined with oxytetracycline, oxytetracycline alone or nothing. Their effectiveness to reduce Cb load in quarterly samples of bulk tank milk (BTM) and of pooled milk of primiparous (MP) was assessed through logistic hierarchical models. A significant reduction in Cb load was observed in herds where the vaccination of ≥80% of dairy cows was implemented; whereas the use of antibiotics was uneffective. Our findings support the interest of a whole vaccination strategy and provide evidence for decreasing the use of antibiotics in dairy cattle herds.     

Neospora caninum DNA detection by TaqMan real-time PCR assay in experimentally infected pregnant heifers

Neosporosis has been considered the main cause of abortion between the first and the second trimester of pregnancy in cattle. Therefore, the objective of this study was to identify the presence of Neospora caninum DNA obtained from experimental models based on the evaluation of different areas of the fetal nervous system and organs from heifers previously inoculated with NC-1 after or before insemination. This study was performed with Hereford × Nelore (n = 29) heifers and all animals were considered free of diseases at the beginning of the experiment. All animals were bred by fixed-time artificial insemination (TAI) and allocated as follows: (a) seronegative heifers subjected to TAI (TAI, n = 9), (b) heifers infected with N. caninun 60 days prior to TAI (NC-1 + TAI, n = 9), and (c) heifers submitted to TAI and infected with N. caninum 60 days later (TAI + NC-1, n = 11). The pregnancy was confirmed by transrectal ultrasonography 35 days after TAI and evaluated every 30 days until the end of gestation. Fetuses were collected surgically at 170 days of gestation, and immediately necropsied to remove tissues aseptically. Samples of the central nervous system (CNS), heart, kidney, lung, liver, skeletal muscle and caruncle were collected for DNA extraction. Days of gestation at abortion and interval from abortion to first insemination were examined by Student's t-test. At 35 days of gestation the pregnancy rates in the group NC-1 + TAI (4/9, 44.4%) was lower than in the control group (8/9, 88.8%, P < 0.05). At 60 days, the pregnancy rates in the NC-1 + TAI group (0/4, 0%) was lower compared to TAI + NC-1 (5/7, 71.4%) and control (6/8, 75.0%) groups (P < 0.05). Animals from the group NC-1 + TAI were re-inseminated 60 days after the first TAI. After pregnancy losses throughout the study, 5 animals (TAI), 3 animals (NC-1 + TAI) and 5 animals (TAI + NC-1) maintained pregnancy until 170 days of gestation. TaqMan RT-PCR demonstrated the presence of N. caninum DNA in the medulla and right posterior cortex in 3 out of 5 fetuses from the TAI + NC-1 group. We concluded that heifers infected after TAI had a higher incidence of the parasite at the fetus CNS. Identification of N. caninum by TaqMan RT-PCR would assist in the investigation of infection and in the evaluation of vaccines or therapeutic drugs to control neosporosis in cattle.