Endemism and evolutionary history in conflict over Madagascar’s freshwater conservation priorities

Regional-scale biodiversity indicators provide important criteria for the selection of protected areas in conservation, but their application is often hindered by a lack of taxonomic knowledge. Moreover, different indicators include different types of information, sometimes leading to divergent conservation priorities. Madagascar tops the world list of biodiversity hotspots and much conservation effort has been directed toward its threatened plants and vertebrates. In contrast, its highly diverse freshwater invertebrate fauna has received comparatively little conservation attention. We conducted an inventory of Malagasy adephagan water beetles (Coleoptera, Dytiscidae, Noteridae, Gyrinidae, Haliplidae) using a combined morphological and molecular approach. In total, 2043 beetles from 153 sites were sequenced for cytochrome oxidase subunit I (cox1), and species delimitation was carried out using the coalescent-based GMYC model. Phylogenetic relationships of the resulting entities were established using cox1 combined with partial 16S rRNA and 28S rRNA sequences. Ten national parks were assessed for their species richness, phylogenetic diversity (PD) and endemism. We were particularly interested in the contribution of endemic species to PD. Congruence between molecular and taxonomic identifications was high (91%), with 69% of sampled species endemic to Madagascar. Interestingly, we found that PD at a site was negatively correlated to the proportion of endemic species, most likely because endemics are the result of recent radiations with relatively little branch-length contribution to the measure of PD. This suggests that ranking sites for conservation priority based solely on PD potentially disfavor endemic species by underrating areas where the evolutionary process is most active.     

Quantitative Trait Loci Analysis of Resistance to Sclerotinia sclerotiorum in Sunflower

ABSTRACT A quantitative trait loci (QTL) analysis of resistance to Sclerotinia sclerotiorum was carried out with 283 sunflower (Helianthus annuus) F(2:3) families derived from a cross between a resistant (SWS-B-04) and a highly susceptible sunflower inbred line. For that purpose, a genetic map based on 195 amplified fragment length polymorphism and 20 simple sequence repeat markers was constructed. The map has a size of 2,273.5 centimorgans and comprises 17 linkage groups, 12 of which could be associated to already defined linkage groups. The heads of sunflower F(3) families were artificially inoculated by using sclerotinia mycelium in three field environments. The lesion length was measured in centimeters 1 week postinoculation and head rot was scored according to a 1-to-8 head rot scale 2 weeks postinoculation. Using the composite interval mapping procedure, three QTL for lesion length and two QTL for head rot could be identified. These QTL explain 10.6 to 17.1% of the total phenotypic variance.     

A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation

Beetles represent almost one-fourth of all described species, and knowledge about their relationships and evolution adds to our understanding of biodiversity. We performed a comprehensive phylogenetic analysis of Coleoptera inferred from three genes and nearly 1900 species, representing more than 80% of the world's recognized beetle families. We defined basal relationships in the Polyphaga supergroup, which contains over 300,000 species, and established five families as the earliest branching lineages. By dating the phylogeny, we found that the success of beetles is explained neither by exceptional net diversification rates nor by a predominant role of herbivory and the Cretaceous rise of angiosperms. Instead, the pre-Cretaceous origin of more than 100 present-day lineages suggests that beetle species richness is due to high survival of lineages and sustained diversification in a variety of niches.     

The airborne pollen flow of maize (Zea mays L.) in a multi-crop designed field plot

Previous studies on pollen dispersal helped to identify objective parameters of coexistence of genetically modified (GM) and conventional maize. Nevertheless, data on the quantity and dynamics of airborne pollen flow (APF) in air layers above and around a maize field, and its contribution to the rate of cross-pollination, are still missing. In 2004 and 2005, 690 pollen traps were arranged at different locations relative to three maize fields: in the maize fields itself, and in fields adjacent to the maize fields, consisting either of grassland or wheat stubble. The traps were positioned along strings over maize, wheat stubble and grassland at two fixed heights relative to the maize plants: immediately above (0 m) and 1 m above tassel height (1 m). Whereas the traps positioned at 0 m over maize indicated the amount of pollen shed, those located at 1 m above tassel height indicated airborne pollen flow to this upper air layer. The amount of pollen at 1 m relative to the amount of pollen just above the tassel, ranged from 4% to 40%; very high values correlated with strong winds during flowering. These winds were not strong enough to transport significant amounts of pollen farther than a few meters away from the pollen source because above both adjacent grass and wheat stubble environments, the amount of pollen at 1 m above tassel height was similarly low. In one single experiment and at 0 m above tassel height, a significantly higher amount of pollen was found over wheat stubble than over grassland. During this experiment, high temperatures and low wind speeds coincided with pollen shed, which may have favored the generation of thermals over hot surfaces, capable of lifting pollen grains.     

Local-scale diversity of Yersinia pestis: A case study from Ambohitromby,Ankazobe District,Madagascar

Plague is a re-emerging zoonotic disease and a major public health concern in several portions of the world, especially in Madagascar. We report on the presence of different subtypes of Yersinia pestis co-occurring in the same locality. After confirmation of a human plague case in Ambohitromby Commune (Ankazobe District) via isolation of Y. pestis, we undertook small mammal trapping to identify the circulation of Y. pestis amongst rodents in this locality; blood samples were collected from rodents for seroprevalence analysis. Of the 60 individuals of Rattus rattus captured, one yielded an isolate of Y. pestis, 13 others were positive for F1 antigen of Y. pestis using a rapid diagnostic test, and 4 were PCR positive targeting the caf1 and pla genes; 28/60 (46.7%) of the captured R. rattus were seropositive for Y. pestis. Whole-genome SNP analyses revealed that the two isolates obtained from the human case, and the R. rattus belonged to two different subtypes of Y. pestis (s05 and s13, respectively) that were circulating concurrently in Ambohitromby in 2016. Three Y. pestis subtypes (s03, s05 and s13) have now been isolated from Ambohitromby. Subtype s05 had been persisting there for >10 years but one or both of the other subtypes may have been introduced from the Central Highlands region as they were not observed in previous years (s13) or only observed once previously (s03). High seroprevalence against Y. pestis in R. rattus suggests that a portion of the local murine population may have acquired resistance to Y. pestis. Future research should focus on genomically characterizing Y. pestis strains circulating in Ankazobe District and other plague-endemic regions of Madagascar to better understand the overall phylogeography of Y. pestis.     

“Current-IPM-Fit”: a new proposal for enhanced efficacy labelling of plant protection products

Journal of Plant Diseases and Protection - In the European Union, plant protection products (PPP) undergo an intensive evaluation procedure including toxicology, ecotoxicology, fate and residues...