The potential of hyperspectral images and partial least square regression for predicting total carbon,total nitrogen and their isotope composition in forest litterfall samples

Purpose

The main objective of this study was to examine the potential of using hyperspectral image analysis for prediction of total carbon (TC), total nitrogen (TN) and their isotope composition (δ¹³C and δ¹⁵N) in forest leaf litterfall samples.

Materials and methods

Hyperspectral images were captured from ground litterfall samples of a natural forest in the spectral range of 400–1700 nm. A partial least-square regression model (PLSR) was used to correlate the relative reflectance spectra with TC, TN, δ¹³C and δ¹⁵N in the litterfall samples. The most important wavelengths were selected using β coefficient, and the final models were developed using the most important wavelengths. The models were, then, tested using an external validation set.

Results and discussion

The results showed that the data of TC and δ¹³C could not be fitted to the PLSR model, possibly due to small variations observed in the TC and δ¹³C data. The model, however, was fitted well to TN and δ¹⁵N. The cross-validation R² _cv of the models for TN and δ¹⁵N were 0.74 and 0.67 with the RMSE_cv of 0.53% and 1.07‰, respectively. The external validation R² _ex of the prediction was 0.64 and 0.67, and the RMSE_ex was 0.53% and 1.19 ‰, for TN and δ¹⁵N, respectively. The ratio of performance to deviation (RPD) of the predictions was 1.48 and 1.53, respectively, for TN and δ¹⁵N, showing that the models were reliable for the prediction of TN and δ¹⁵N in new forest leaf litterfall samples.

Conclusions

The PLSR model was not successful in predicting TC and δ¹³C in forest leaf litterfall samples using hyperspectral data. The predictions of TN and δ¹⁵N values in the external litterfall samples were reliable, and PLSR can be used for future prediction.

     

Remarks on genetic diversity and relationship of <Emphasis Type="Italic">Punica protopunica</Emphasis> and <Emphasis Type="Italic">P. granatum</Emphasis> assessed by molecular analyses

Here, two Punica species, viz., P. protopunica Balf. fil., reported as native to Socotra, and P. granatum L., were compared for the first time. Analysis of one P. protopunica and eleven P. granatum accessions was performed using three molecular markers, i.e., sequence related amplified polymorphism (SRAP), target region amplification polymorphism (TRAP), and intron targeted amplified polymorphism (ITAP), along with analysis of pgWD40 sequences, a gene involved in anthocyanin biosynthesis. All markers revealed the relationship between the two species and placed them at 33% similarity. SRAP, TRAP, and ITAP generated a total of 299, 260, and 160 bands, respectively. Of these, 78, 74, and 41 bands were specific for P. protopunica, and 92, 85, and 57 bands, respectively, were shared between both species. Sequence analysis of pgWD40~870 bp amplicons exhibited 100% identity among P. granatum accessions and 98% identity to that of P. protopunica. Phylogenetic analysis of WD40 sequences from monocot and dicot species, including both Punica species confirmed the relation between P. protopunica and P. granatum, supporting earlier reports that P. protopunica could be an ancestral species of P. granatum. Furthermore, the genetic diversity among and within P. granatum accessions from Egypt (3), Mexico (5), and Yemen (3) was assessed. Molecular marker-based relationships among region-bulked accessions was approximately the same (~90% similarity), whereas the degree of genetic variation was altered within each region. Specific bands (alleles) for accessions of each region along with those shared among them were identified. Thus, these bands could be used for pomegranate genotyping and breeding programs.     

Inconspicuous restraint of rice seedling growth by root-infecting fungi in soil of a rice paddy field

 Rice seedling growth, estimated by plant height and root development and discoloration, was better in pasteurized soil than in unpasteurized soil obtained from a flooded rice field. Rice seedlings also grew better in sterilized soil modified by adding roots harvested from the pasteurized soil than in soil modified by adding roots harvested from the unpasteurized soil. The results demonstrate that seedling growth in the rice field soil was inhibited by soil microorganisms, even though no typical symptoms such as seedling blight or damping-off appeared. Pythium aristosporum is suggested to be involved in the inhibition. Thus, it appears that inconspicuous restraint of rice seedling growth could occur in soils of rice paddy fields. Received: May 20, 2002 / Accepted: October 16, 2002 Acknowledgments The authors thank Dr. T. Ichitani, former professor at Osaka Prefectural University, for providing an isolate of Pythium aristosporum for comparison, and Mr. Mitsuaki Sato of Akita Prefectural College of Agriculture for technical assistance.     

Antiradical Capacity and Induction of Apoptosis on HeLa Cells by a <Emphasis Type="Italic">Phaseolus vulgaris</Emphasis> Extract

Jamapa bean is a black Phaseolus vulgaris variety rich in condensed tannins, anthocyanins and flavonols with interesting biological activities. The objective of this work was to evaluate the antiradical capacity (ARC) of a Jamapa bean methanolic extract (BME) and some of the proanthocyanidin-rich fractions derived from it, using the 1,1-diphenyl-2-picrylhydrazyl (DPPH) assay. The effect of the BME on some proteins involved in apoptosis on HeLa cells was also evaluated. A strong correlation between proanthocyanidin concentration in BME and antiradical capacity was found, suggesting that these compounds contribute significantly to antiradical activity. BME was a better radical scavenger than butylated hydroxytoluene (45.6 and 33.9% ARC at 400 μM, respectively). Two proanthocyanidin-rich fractions obtained after a preliminary separation of the BME using Toyopearl (TP4 and TP6) exhibited a higher antiradical activity than the parent extract. The treatment of HeLa cells with 35 μg BME/ml/24 h increased the expression of Bax and Caspase-3, pro-apoptotic proteins (6.13 and 1.2 times for Caspase-3 and Bax, respectively). The mechanism of action of some proteins involved in apoptosis was also evaluated, and the results suggest that black Jamapa bean could be an important source of polyphenolic compounds with potential biological use as antioxidant and anticancer agents.     

Impact of bark and foliage harvesting on fruit production of the multipurpose tree <Emphasis Type="Italic">Afzelia africana</Emphasis> in Burkina Faso (West Africa)

In sub-Saharan Africa, extraction for daily livelihood needs often results in uncontrolled exploitation of bark and leaves of valuable medicinal and fodder trees. However, overharvesting of bark and foliage can reduce fruit production and threaten reproduction. This study evaluates the impact of combined bark and foliage harvesting on the performance of fruit production of Afzelia africana in Burkina Faso. We compared fruit and seed production at different harvesting intensities. Data on fruit yields were collected by stratified random sampling of 91 trees with no, low, severe, and very severe harvesting intensities. The fruit production varied with harvesting intensity, tree size and number of branches. Fruit and seed quantity and quality decreased with increasing harvesting intensity. However, no significant difference was detected between trees without and trees under low harvesting. Trees of all size classes under very severe harvesting intensity had no fruits. Under low harvesting impact, large trees had twice as many fruits as the control, whereas fruits were reduced by half to 95 % for the small trees. High harvesting intensity is an unsustainable practice that should be completely prohibited in order to ensure longterm persistence of Afzelia africana. Low harvesting intensity should be allowed, but only on large reproductive individuals.     

The grafting of recycled polyol from waste polyurethane foam onto new polyurethane and its impact on shape recovery and water vapor permeation

Recycled polyols from waste polyurethane (PU) foams were grafted onto PU to improve the properties such as tensile strength, shape recovery, low-temperature flexibility, and water compatibility. The recycled polyol was either purified by column chromatography before grafting or was used directly for grafting. The soft segment melting temperature of PU did not notably increase with the addition of polyol, whereas the glass transition temperature increased with increased polyol content. The tensile strength sharply increased at low polyol content and decreased at high polyol content, while the strain at break did not significantly change with an increase in polyol content. The shape recovery at 10 oC notably improved compared with unmodified PU and remained high after four cyclic tests. Polyol-grafted PU demonstrated better lowtemperature flexibility and reduced the water vapor permeability of PU membranes. Overall, grafting recycled polyol onto PU significantly improved the tensile stress, shape recovery, and low-temperature flexibility of PU.     

Hybridizing <Emphasis Type="Italic">Brassica rapa</Emphasis> with wild crucifers <Emphasis Type="Italic">Diplotaxis erucoides</Emphasis> and <Emphasis Type="Italic">Brassica maurorum</Emphasis>

Two wide hybrids, Diplotaxis erucoides (2n = 14) × Brassica rapa (2n = 20) and B. maurorum (2n = 20) × B. rapa, were developed using the sequential ovary–ovule culture. Reciprocal crosses failed, possibly as a consequence of strong unilateral incompatibility. The F ₁ hybrids in each combination were completely male sterile and morphologically intermediate to the respective parents. DNA marker polymorphism and chromosome counts confirmed their hybrid nature. High frequency of bivalents in the F ₁ and the presence of trivalents/quadrivalents in the derived amphiploids suggested genomic duplications and homoeology of the parental genomes. Up to three homoeologous pairs between the D. erucoides (D^eD^e) and B. rapa (AA) genomes, and one between B. maurorum (B^mB^m) and B. rapa genomes were observed. Successful synthesis of the F ₁ hybrids and amphiploids of B. rapa with D. erucoides and B. maurorum, and allosyndetic chromosome pairing are expected to permit introgressions of desirable loci into the cultivated Brassica germplasm, especially for resistance to Alternaria brassicae and Albugo candida.     

Evaluating eddy covariance cotton ET measurements in an advective environment with large weighing lysimeters

Eddy covariance (EC) systems are being used to assess the accuracy of remote sensing methods in mapping surface sensible and latent heat fluxes and evapotranspiration (ET) from local to regional scales, and in crop coefficient development. Therefore, the objective was to evaluate the accuracy of EC systems in measuring sensible heat (H) and latent heat (LE) fluxes. For this purpose, two EC systems were installed near large monolithic weighing lysimeters, on irrigated cotton fields in the Texas High Plains, during the months of June and July 2008. Sensible and latent heat fluxes were underestimated with an average error of about 30%. Most of the errors were from nocturnal measurements. Energy balance (EB) closure was 73.2–78.0% for daytime fluxes. Thus, daylight fluxes were adjusted for lack of EB closure using the Bowen ratio/preservation of energy principle, which improved the resulting EC heat flux agreement with lysimetric values. Further adjustments to EC-based ET included nighttime ET (composite) incorporation, and the use of ‘heat flux source area’ (footprint) functions to compensate ET when the footprint expanded beyond the crop field boundary. As a result, ET values remarkably matched lysimetric ET values, with a ‘mean bias error ± root mean square error’ of −0.03 ± 0.5 mm day⁻¹ (or −0.6 ± 10.2%).     

Edge effect and matrix influence on the nest survival of an old forest specialist,the Brown Creeper (<Emphasis Type="Italic">Certhia americana</Emphasis>)

Conservation strategies should be based on a solid understanding of processes underlying species response to landscape change. In forests fragmented by agriculture, elevated nest predation rates have been reported in many forest bird species, especially near edges. In intensively-managed forest landscapes, timber harvesting might also be associated with negative edge effects or broader “context” effects on some species when the matrix provides additional resources to their major nest predators. In this study, we hypothesized that proximity to a forest edge and proportion of cone-producing plantations will increase nest predation risk in fragments of relatively undisturbed forest. We focused on the Brown Creeper (Certhia americana), an indicator species of late-seral forests. We compared habitat configuration and composition at four spatial scales (0.14, 0.5, 1 and 2 km) around 54 nests and related daily nest survival rate to the distance to the nearest forest edge, mean patch size of late-seral forest (r = 141 m), proportion of non-forested lands (r = 141 m), density of maintained roads (r = 1 km), proportion of cone-producing spruce plantations (r = 2 km), and year. The best model included distance to the nearest edge and proportion of cone-producing plantations. Distance of nests to the nearest edge was the best individual predictor of daily nest survival. A larger sample of nests showed a significant threshold in distance to the nearest forest edge; nests located at least 100 m away were more likely to fledge young. These results suggest that even in managed forest landscapes, matrix effects can be important and some bird species may exhibit negative edge effects.